data_8WJC # _model_server_result.job_id vHniknJnAATpsS_JnTFVjg _model_server_result.datetime_utc '2024-11-22 23:41:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8WJC # _exptl.entry_id 8WJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 674.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.25 _cell.angle_gamma 90 _cell.entry_id 8WJC _cell.length_a 50.2 _cell.length_b 81.55 _cell.length_c 50.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C20 H24 N10 O13 P2' _chem_comp.formula_weight 674.411 _chem_comp.id 4BW _chem_comp.mon_nstd_flag . _chem_comp.name "2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "3',3' cGAMP;c-GMP-AMP;c[G(3',5')pA(3',5')p]" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CBA 4BW sing 1 n n CBA NAS 4BW doub 2 n n CBA NAT 4BW sing 3 n n NAS CBG 4BW sing 4 n n NAT CBC 4BW sing 5 n n OAG CBI 4BW sing 6 n n CBG NBQ 4BW sing 7 n y CBG CBE 4BW doub 8 n y CBC CBE 4BW sing 9 n n CBC OAC 4BW doub 10 n n OAI PBS 4BW doub 11 n n CBI CBO 4BW sing 12 n n CBI CBM 4BW sing 13 n n CBO NBQ 4BW sing 14 n n CBO OAX 4BW sing 15 n n NBQ CAL 4BW sing 16 n y CBE NAR 4BW sing 17 n y OAE PBS 4BW sing 18 n n OAX CBK 4BW sing 19 n n PBS OAZ 4BW sing 20 n n PBS O5' 4BW sing 21 n n OAZ CBM 4BW sing 22 n n CBM CBK 4BW sing 23 n n CAL NAR 4BW doub 24 n y CBK CAN 4BW sing 25 n n N6 C6 4BW sing 26 n n N7 C8 4BW doub 27 n y N7 C5 4BW sing 28 n y O5' C5' 4BW sing 29 n n C8 N9 4BW sing 30 n y C6 C5 4BW doub 31 n y C6 N1 4BW sing 32 n y C5 C4 4BW sing 33 n y CAN OAV 4BW sing 34 n n C5' C4' 4BW sing 35 n n OAV PBR 4BW sing 36 n n N9 C4 4BW sing 37 n y N9 C1' 4BW sing 38 n n N1 C2 4BW doub 39 n y C4 N3 4BW doub 40 n y O4' C4' 4BW sing 41 n n O4' C1' 4BW sing 42 n n C4' C3' 4BW sing 43 n n C3' C2' 4BW sing 44 n n C3' O3' 4BW sing 45 n n C1' C2' 4BW sing 46 n n C2 N3 4BW sing 47 n y PBR OAD 4BW doub 48 n n PBR O3' 4BW sing 49 n n PBR OAH 4BW sing 50 n n C2' O2' 4BW sing 51 n n NAT H1 4BW sing 52 n n NAA H2 4BW sing 53 n n NAA H3 4BW sing 54 n n CAL H4 4BW sing 55 n n CBO H5 4BW sing 56 n n CBI H6 4BW sing 57 n n OAG H7 4BW sing 58 n n CBK H8 4BW sing 59 n n CAN H9 4BW sing 60 n n CAN H10 4BW sing 61 n n OAH H11 4BW sing 62 n n CBM H12 4BW sing 63 n n OAE H13 4BW sing 64 n n C5' H14 4BW sing 65 n n C5' H15 4BW sing 66 n n C4' H16 4BW sing 67 n n C3' H17 4BW sing 68 n n C2' H18 4BW sing 69 n n O2' H19 4BW sing 70 n n C1' H20 4BW sing 71 n n C8 H21 4BW sing 72 n n C2 H22 4BW sing 73 n n N6 H23 4BW sing 74 n n N6 H24 4BW sing 75 n n # _atom_sites.entry_id 8WJC _atom_sites.fract_transf_matrix[1][1] 0.01992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004325 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 4BW A 1 201 201 4BW 4BW . F 2 4BW C 1 201 201 4BW 4BW . G 3 HOH A 1 301 13 HOH HOH . G 3 HOH A 2 302 28 HOH HOH . G 3 HOH A 3 303 15 HOH HOH . G 3 HOH A 4 304 16 HOH HOH . G 3 HOH A 5 305 30 HOH HOH . G 3 HOH A 6 306 31 HOH HOH . G 3 HOH A 7 307 23 HOH HOH . G 3 HOH A 8 308 32 HOH HOH . G 3 HOH A 9 309 60 HOH HOH . G 3 HOH A 10 310 36 HOH HOH . G 3 HOH A 11 311 50 HOH HOH . G 3 HOH A 12 312 47 HOH HOH . G 3 HOH A 13 313 39 HOH HOH . G 3 HOH A 14 314 6 HOH HOH . G 3 HOH A 15 315 7 HOH HOH . G 3 HOH A 16 316 5 HOH HOH . G 3 HOH A 17 317 37 HOH HOH . G 3 HOH A 18 318 49 HOH HOH . G 3 HOH A 19 319 70 HOH HOH . G 3 HOH A 20 320 67 HOH HOH . G 3 HOH A 21 321 55 HOH HOH . G 3 HOH A 22 322 58 HOH HOH . H 3 HOH B 1 201 54 HOH HOH . H 3 HOH B 2 202 65 HOH HOH . H 3 HOH B 3 203 3 HOH HOH . H 3 HOH B 4 204 21 HOH HOH . H 3 HOH B 5 205 42 HOH HOH . H 3 HOH B 6 206 53 HOH HOH . H 3 HOH B 7 207 64 HOH HOH . H 3 HOH B 8 208 26 HOH HOH . H 3 HOH B 9 209 27 HOH HOH . H 3 HOH B 10 210 69 HOH HOH . H 3 HOH B 11 211 8 HOH HOH . H 3 HOH B 12 212 22 HOH HOH . H 3 HOH B 13 213 10 HOH HOH . H 3 HOH B 14 214 72 HOH HOH . H 3 HOH B 15 215 73 HOH HOH . H 3 HOH B 16 216 61 HOH HOH . H 3 HOH B 17 217 57 HOH HOH . I 3 HOH C 1 301 25 HOH HOH . I 3 HOH C 2 302 20 HOH HOH . I 3 HOH C 3 303 14 HOH HOH . I 3 HOH C 4 304 19 HOH HOH . I 3 HOH C 5 305 52 HOH HOH . I 3 HOH C 6 306 48 HOH HOH . I 3 HOH C 7 307 24 HOH HOH . I 3 HOH C 8 308 40 HOH HOH . I 3 HOH C 9 309 35 HOH HOH . I 3 HOH C 10 310 59 HOH HOH . I 3 HOH C 11 311 45 HOH HOH . I 3 HOH C 12 312 11 HOH HOH . I 3 HOH C 13 313 46 HOH HOH . I 3 HOH C 14 314 34 HOH HOH . I 3 HOH C 15 315 71 HOH HOH . I 3 HOH C 16 316 41 HOH HOH . I 3 HOH C 17 317 56 HOH HOH . I 3 HOH C 18 318 43 HOH HOH . I 3 HOH C 19 319 51 HOH HOH . J 3 HOH D 1 201 17 HOH HOH . J 3 HOH D 2 202 2 HOH HOH . J 3 HOH D 3 203 29 HOH HOH . J 3 HOH D 4 204 1 HOH HOH . J 3 HOH D 5 205 9 HOH HOH . J 3 HOH D 6 206 38 HOH HOH . J 3 HOH D 7 207 12 HOH HOH . J 3 HOH D 8 208 18 HOH HOH . J 3 HOH D 9 209 66 HOH HOH . J 3 HOH D 10 210 44 HOH HOH . J 3 HOH D 11 211 33 HOH HOH . J 3 HOH D 12 212 4 HOH HOH . J 3 HOH D 13 213 63 HOH HOH . J 3 HOH D 14 214 62 HOH HOH . J 3 HOH D 15 215 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 4BW . . . E 2 25.634 3.779 16.793 0.95 33.5 ? OAC 4BW 201 A 1 HETATM 2 C CBC 4BW . . . E 2 25.678 3.779 18.034 0.95 40.81 ? CBC 4BW 201 A 1 HETATM 3 N NAT 4BW . . . E 2 24.551 3.803 18.754 0.95 41.6 ? NAT 4BW 201 A 1 HETATM 4 C CBA 4BW . . . E 2 24.579 3.816 20.095 0.95 47.93 ? CBA 4BW 201 A 1 HETATM 5 N NAA 4BW . . . E 2 23.418 3.828 20.812 0.95 45.08 ? NAA 4BW 201 A 1 HETATM 6 N NAS 4BW . . . E 2 25.772 3.803 20.735 0.95 49.48 ? NAS 4BW 201 A 1 HETATM 7 C CBG 4BW . . . E 2 26.937 3.789 20.02 0.95 46.16 ? CBG 4BW 201 A 1 HETATM 8 C CBE 4BW . . . E 2 26.91 3.771 18.654 0.95 39 ? CBE 4BW 201 A 1 HETATM 9 N NAR 4BW . . . E 2 28.191 3.744 18.205 0.95 41.1 ? NAR 4BW 201 A 1 HETATM 10 C CAL 4BW . . . E 2 29 3.754 19.281 0.95 37.73 ? CAL 4BW 201 A 1 HETATM 11 N NBQ 4BW . . . E 2 28.225 3.782 20.376 0.95 42.6 ? NBQ 4BW 201 A 1 HETATM 12 C CBO 4BW . . . E 2 28.669 3.79 21.784 0.95 43.71 ? CBO 4BW 201 A 1 HETATM 13 C CBI 4BW . . . E 2 28.24 2.469 22.382 0.95 43.91 ? CBI 4BW 201 A 1 HETATM 14 O OAG 4BW . . . E 2 27.777 2.694 23.706 0.95 41.75 ? OAG 4BW 201 A 1 HETATM 15 O OAX 4BW . . . E 2 30.098 3.842 21.861 0.95 36.76 ? OAX 4BW 201 A 1 HETATM 16 C CBK 4BW . . . E 2 30.543 2.766 22.66 0.95 38.08 ? CBK 4BW 201 A 1 HETATM 17 C CAN 4BW . . . E 2 31.912 2.343 22.206 0.95 42.67 ? CAN 4BW 201 A 1 HETATM 18 O OAV 4BW . . . E 2 31.76 1.873 20.89 0.95 40.25 ? OAV 4BW 201 A 1 HETATM 19 P PBR 4BW . . . E 2 32.929 0.993 20.237 0.95 45.53 ? PBR 4BW 201 A 1 HETATM 20 O O3' 4BW . . . E 2 32.954 -0.484 20.907 0.95 42.49 ? O3' 4BW 201 A 1 HETATM 21 O OAH 4BW . . . E 2 34.276 1.632 20.447 0.95 47.32 ? OAH 4BW 201 A 1 HETATM 22 O OAD 4BW . . . E 2 32.567 0.908 18.773 0.95 45.34 ? OAD 4BW 201 A 1 HETATM 23 C CBM 4BW . . . E 2 29.518 1.683 22.471 0.95 42.85 ? CBM 4BW 201 A 1 HETATM 24 O OAZ 4BW . . . E 2 29.485 0.847 23.608 0.95 44.86 ? OAZ 4BW 201 A 1 HETATM 25 P PBS 4BW . . . E 2 28.797 -0.608 23.534 0.95 44.85 ? PBS 4BW 201 A 1 HETATM 26 O OAI 4BW . . . E 2 27.429 -0.503 22.911 0.95 47.45 ? OAI 4BW 201 A 1 HETATM 27 O OAE 4BW . . . E 2 28.693 -1.135 24.955 0.95 48.13 ? OAE 4BW 201 A 1 HETATM 28 O O5' 4BW . . . E 2 29.698 -1.589 22.634 0.95 42.04 ? O5' 4BW 201 A 1 HETATM 29 C C5' 4BW . . . E 2 31.003 -1.941 23.057 0.95 40.41 ? C5' 4BW 201 A 1 HETATM 30 C C4' 4BW . . . E 2 31.753 -2.385 21.828 0.95 40.59 ? C4' 4BW 201 A 1 HETATM 31 O O4' 4BW . . . E 2 31.044 -3.457 21.204 0.95 44.34 ? O4' 4BW 201 A 1 HETATM 32 C C3' 4BW . . . E 2 31.8 -1.294 20.779 0.95 43.19 ? C3' 4BW 201 A 1 HETATM 33 C C2' 4BW . . . E 2 31.868 -2.059 19.477 0.95 42.74 ? C2' 4BW 201 A 1 HETATM 34 O O2' 4BW . . . E 2 33.214 -2.394 19.166 0.95 46.42 ? O2' 4BW 201 A 1 HETATM 35 C C1' 4BW . . . E 2 31.15 -3.351 19.777 0.95 41.3 ? C1' 4BW 201 A 1 HETATM 36 N N9 4BW . . . E 2 29.82 -3.335 19.116 0.95 46.43 ? N9 4BW 201 A 1 HETATM 37 C C8 4BW . . . E 2 28.611 -3.279 19.699 0.95 38.14 ? C8 4BW 201 A 1 HETATM 38 N N7 4BW . . . E 2 27.678 -3.301 18.707 0.95 41.8 ? N7 4BW 201 A 1 HETATM 39 C C5 4BW . . . E 2 28.331 -3.373 17.514 0.95 41.9 ? C5 4BW 201 A 1 HETATM 40 C C4 4BW . . . E 2 29.672 -3.391 17.782 0.95 40.32 ? C4 4BW 201 A 1 HETATM 41 N N3 4BW . . . E 2 30.581 -3.443 16.769 0.95 46.53 ? N3 4BW 201 A 1 HETATM 42 C C2 4BW . . . E 2 30.176 -3.487 15.485 0.95 50.55 ? C2 4BW 201 A 1 HETATM 43 N N1 4BW . . . E 2 28.865 -3.473 15.19 0.95 42.89 ? N1 4BW 201 A 1 HETATM 44 C C6 4BW . . . E 2 27.943 -3.419 16.178 0.95 40.9 ? C6 4BW 201 A 1 HETATM 45 N N6 4BW . . . E 2 26.651 -3.41 15.842 0.95 36.98 ? N6 4BW 201 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #