data_8WKY # _model_server_result.job_id '_HDT1MuH5p9OllkT2fUdgg' _model_server_result.datetime_utc '2024-12-26 14:22:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2104}' # _entry.id 8WKY # _exptl.entry_id 8WKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.74 _cell.angle_gamma 90 _cell.entry_id 8WKY _cell.length_a 166.92 _cell.length_b 44.9 _cell.length_c 89.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 466 A CYS 271 1_555 A SG CYS 472 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C ASP 237 A ASP 1003 1_555 A N YCM 238 A YCM 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C YCM 238 A YCM 1004 1_555 A N SER 239 A SER 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ACE 1 B ACE 1 1_555 B N NLE 2 B NLE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C NLE 2 B NLE 2 1_555 B N ASP 3 B ASP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C PRO 4 B PRO 4 1_555 B N 4J2 5 B 4J2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C 4J2 5 B 4J2 5 1_555 B N ARG 6 B ARG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C LYS 9 B LYS 9 1_555 B N NH2 10 B NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OE2 GLU 112 A GLU 100 1_555 C CA CA . A CA 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc2 A OD1 ASP 134 A ASP 122 1_555 C CA CA . A CA 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 A OD1 ASP 138 A ASP 126 1_555 C CA CA . A CA 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc4 A OD2 ASP 138 A ASP 126 1_555 C CA CA . A CA 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 C CA CA . A CA 2101 1_555 B O ASP 3 B ASP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc6 C CA CA . A CA 2101 1_555 B O 4J2 5 B 4J2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 C CA CA . A CA 2101 1_555 K O HOH . B HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 296 n n C1 O2 OLA sing 297 n n C1 C2 OLA sing 298 n n O2 HO2 OLA sing 299 n n C2 C3 OLA sing 300 n n C2 H21 OLA sing 301 n n C2 H22 OLA sing 302 n n C3 C4 OLA sing 303 n n C3 H31 OLA sing 304 n n C3 H32 OLA sing 305 n n C4 C5 OLA sing 306 n n C4 H41 OLA sing 307 n n C4 H42 OLA sing 308 n n C5 C6 OLA sing 309 n n C5 H51 OLA sing 310 n n C5 H52 OLA sing 311 n n C6 C7 OLA sing 312 n n C6 H61 OLA sing 313 n n C6 H62 OLA sing 314 n n C7 C8 OLA sing 315 n n C7 H71 OLA sing 316 n n C7 H72 OLA sing 317 n n C8 C9 OLA sing 318 n n C8 H81 OLA sing 319 n n C8 H82 OLA sing 320 n n C9 C10 OLA doub 321 z n C9 H9 OLA sing 322 n n C10 C11 OLA sing 323 n n C10 H10 OLA sing 324 n n C11 C12 OLA sing 325 n n C11 H111 OLA sing 326 n n C11 H112 OLA sing 327 n n C12 C13 OLA sing 328 n n C12 H121 OLA sing 329 n n C12 H122 OLA sing 330 n n C13 C14 OLA sing 331 n n C13 H131 OLA sing 332 n n C13 H132 OLA sing 333 n n C14 C15 OLA sing 334 n n C14 H141 OLA sing 335 n n C14 H142 OLA sing 336 n n C15 C16 OLA sing 337 n n C15 H151 OLA sing 338 n n C15 H152 OLA sing 339 n n C16 C17 OLA sing 340 n n C16 H161 OLA sing 341 n n C16 H162 OLA sing 342 n n C17 C18 OLA sing 343 n n C17 H171 OLA sing 344 n n C17 H172 OLA sing 345 n n C18 H181 OLA sing 346 n n C18 H182 OLA sing 347 n n C18 H183 OLA sing 348 n n # _atom_sites.entry_id 8WKY _atom_sites.fract_transf_matrix[1][1] 0.005991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000815 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 2101 1 CA CA . D 4 OLA A 1 2102 1 OLA OLA . E 4 OLA A 1 2103 2 OLA OLA . F 4 OLA A 1 2104 3 OLA OLA . G 4 OLA A 1 2105 4 OLA OLA . H 4 OLA A 1 2106 5 OLA OLA . I 4 OLA A 1 2107 6 OLA OLA . J 5 HOH A 1 2201 4 HOH HOH . J 5 HOH A 2 2202 7 HOH HOH . J 5 HOH A 3 2203 3 HOH HOH . J 5 HOH A 4 2204 1 HOH HOH . J 5 HOH A 5 2205 8 HOH HOH . J 5 HOH A 6 2206 6 HOH HOH . J 5 HOH A 7 2207 2 HOH HOH . K 5 HOH B 1 101 10 HOH HOH . K 5 HOH B 2 102 11 HOH HOH . K 5 HOH B 3 103 5 HOH HOH . K 5 HOH B 4 104 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . F 4 325.407 -7.174 223.717 1 72.19 ? C1 OLA 2104 A 1 HETATM 2 O O1 OLA . . . F 4 324.64 -8.07 224.16 1 70.22 ? O1 OLA 2104 A 1 HETATM 3 O O2 OLA . . . F 4 326.178 -6.561 224.502 1 60.15 ? O2 OLA 2104 A 1 HETATM 4 C C2 OLA . . . F 4 325.404 -6.828 222.228 1 62.62 ? C2 OLA 2104 A 1 HETATM 5 C C3 OLA . . . F 4 323.97 -6.645 221.734 1 58.59 ? C3 OLA 2104 A 1 HETATM 6 C C4 OLA . . . F 4 324.001 -6.203 220.273 1 57.84 ? C4 OLA 2104 A 1 HETATM 7 C C5 OLA . . . F 4 322.624 -5.696 219.849 1 62.78 ? C5 OLA 2104 A 1 HETATM 8 C C6 OLA . . . F 4 321.863 -6.811 219.133 1 63.46 ? C6 OLA 2104 A 1 HETATM 9 C C7 OLA . . . F 4 321.628 -6.414 217.677 1 58.53 ? C7 OLA 2104 A 1 HETATM 10 C C8 OLA . . . F 4 320.742 -7.453 216.991 1 60.67 ? C8 OLA 2104 A 1 HETATM 11 C C9 OLA . . . F 4 320.487 -7.023 215.547 1 62.29 ? C9 OLA 2104 A 1 HETATM 12 C C10 OLA . . . F 4 319.521 -7.572 214.836 1 60.95 ? C10 OLA 2104 A 1 HETATM 13 C C11 OLA . . . F 4 318.625 -8.654 215.436 1 61.4 ? C11 OLA 2104 A 1 HETATM 14 C C12 OLA . . . F 4 317.722 -9.233 214.348 1 58.19 ? C12 OLA 2104 A 1 HETATM 15 C C13 OLA . . . F 4 317.177 -10.587 214.801 1 60.63 ? C13 OLA 2104 A 1 HETATM 16 C C14 OLA . . . F 4 316.787 -11.418 213.579 1 60.76 ? C14 OLA 2104 A 1 HETATM 17 C C15 OLA . . . F 4 316.956 -12.903 213.897 1 53.12 ? C15 OLA 2104 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #