data_8WLB # _model_server_result.job_id '_S9dl5tGqRXwZGxFrufdog' _model_server_result.datetime_utc '2025-01-10 16:45:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wlb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8WLB # _exptl.entry_id 8WLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-psicopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WLB _cell.length_a 67.11 _cell.length_b 113.14 _cell.length_c 38.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id WEB _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-psicopyranose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2~{S},3~{R},4~{R},5~{R})-2-(hydroxymethyl)oxane-2,3,4,5-tetrol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 WEB sing 376 n n C1 C2 WEB sing 377 n n O3 C3 WEB sing 378 n n O2 C2 WEB sing 379 n n C2 C3 WEB sing 380 n n C2 O6 WEB sing 381 n n C3 C4 WEB sing 382 n n O6 C6 WEB sing 383 n n O4 C4 WEB sing 384 n n C4 C5 WEB sing 385 n n C6 C5 WEB sing 386 n n C5 O5 WEB sing 387 n n C1 H1 WEB sing 388 n n C1 H2 WEB sing 389 n n O1 H3 WEB sing 390 n n O2 H4 WEB sing 391 n n C3 H5 WEB sing 392 n n O3 H6 WEB sing 393 n n C4 H7 WEB sing 394 n n O4 H8 WEB sing 395 n n C5 H9 WEB sing 396 n n O5 H10 WEB sing 397 n n C6 H11 WEB sing 398 n n C6 H12 WEB sing 399 n n # _atom_sites.entry_id 8WLB _atom_sites.fract_transf_matrix[1][1] 0.014901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WEB A 1 401 401 WEB PSJ . C 3 HOH A 1 501 107 HOH HOH . C 3 HOH A 2 502 94 HOH HOH . C 3 HOH A 3 503 1 HOH HOH . C 3 HOH A 4 504 99 HOH HOH . C 3 HOH A 5 505 41 HOH HOH . C 3 HOH A 6 506 89 HOH HOH . C 3 HOH A 7 507 20 HOH HOH . C 3 HOH A 8 508 82 HOH HOH . C 3 HOH A 9 509 126 HOH HOH . C 3 HOH A 10 510 36 HOH HOH . C 3 HOH A 11 511 118 HOH HOH . C 3 HOH A 12 512 68 HOH HOH . C 3 HOH A 13 513 31 HOH HOH . C 3 HOH A 14 514 87 HOH HOH . C 3 HOH A 15 515 90 HOH HOH . C 3 HOH A 16 516 129 HOH HOH . C 3 HOH A 17 517 6 HOH HOH . C 3 HOH A 18 518 138 HOH HOH . C 3 HOH A 19 519 124 HOH HOH . C 3 HOH A 20 520 122 HOH HOH . C 3 HOH A 21 521 42 HOH HOH . C 3 HOH A 22 522 128 HOH HOH . C 3 HOH A 23 523 29 HOH HOH . C 3 HOH A 24 524 30 HOH HOH . C 3 HOH A 25 525 108 HOH HOH . C 3 HOH A 26 526 38 HOH HOH . C 3 HOH A 27 527 134 HOH HOH . C 3 HOH A 28 528 81 HOH HOH . C 3 HOH A 29 529 100 HOH HOH . C 3 HOH A 30 530 140 HOH HOH . C 3 HOH A 31 531 86 HOH HOH . C 3 HOH A 32 532 3 HOH HOH . C 3 HOH A 33 533 102 HOH HOH . C 3 HOH A 34 534 44 HOH HOH . C 3 HOH A 35 535 119 HOH HOH . C 3 HOH A 36 536 105 HOH HOH . C 3 HOH A 37 537 136 HOH HOH . C 3 HOH A 38 538 131 HOH HOH . C 3 HOH A 39 539 137 HOH HOH . C 3 HOH A 40 540 46 HOH HOH . C 3 HOH A 41 541 37 HOH HOH . C 3 HOH A 42 542 79 HOH HOH . C 3 HOH A 43 543 127 HOH HOH . C 3 HOH A 44 544 55 HOH HOH . C 3 HOH A 45 545 63 HOH HOH . C 3 HOH A 46 546 21 HOH HOH . C 3 HOH A 47 547 115 HOH HOH . C 3 HOH A 48 548 120 HOH HOH . C 3 HOH A 49 549 28 HOH HOH . C 3 HOH A 50 550 80 HOH HOH . C 3 HOH A 51 551 54 HOH HOH . C 3 HOH A 52 552 33 HOH HOH . C 3 HOH A 53 553 48 HOH HOH . C 3 HOH A 54 554 88 HOH HOH . C 3 HOH A 55 555 66 HOH HOH . C 3 HOH A 56 556 26 HOH HOH . C 3 HOH A 57 557 35 HOH HOH . C 3 HOH A 58 558 50 HOH HOH . C 3 HOH A 59 559 27 HOH HOH . C 3 HOH A 60 560 112 HOH HOH . C 3 HOH A 61 561 69 HOH HOH . C 3 HOH A 62 562 51 HOH HOH . C 3 HOH A 63 563 58 HOH HOH . C 3 HOH A 64 564 12 HOH HOH . C 3 HOH A 65 565 106 HOH HOH . C 3 HOH A 66 566 8 HOH HOH . C 3 HOH A 67 567 15 HOH HOH . C 3 HOH A 68 568 32 HOH HOH . C 3 HOH A 69 569 4 HOH HOH . C 3 HOH A 70 570 2 HOH HOH . C 3 HOH A 71 571 57 HOH HOH . C 3 HOH A 72 572 104 HOH HOH . C 3 HOH A 73 573 59 HOH HOH . C 3 HOH A 74 574 5 HOH HOH . C 3 HOH A 75 575 70 HOH HOH . C 3 HOH A 76 576 52 HOH HOH . C 3 HOH A 77 577 10 HOH HOH . C 3 HOH A 78 578 45 HOH HOH . C 3 HOH A 79 579 19 HOH HOH . C 3 HOH A 80 580 111 HOH HOH . C 3 HOH A 81 581 9 HOH HOH . C 3 HOH A 82 582 92 HOH HOH . C 3 HOH A 83 583 76 HOH HOH . C 3 HOH A 84 584 110 HOH HOH . C 3 HOH A 85 585 23 HOH HOH . C 3 HOH A 86 586 83 HOH HOH . C 3 HOH A 87 587 116 HOH HOH . C 3 HOH A 88 588 25 HOH HOH . C 3 HOH A 89 589 117 HOH HOH . C 3 HOH A 90 590 43 HOH HOH . C 3 HOH A 91 591 77 HOH HOH . C 3 HOH A 92 592 7 HOH HOH . C 3 HOH A 93 593 39 HOH HOH . C 3 HOH A 94 594 114 HOH HOH . C 3 HOH A 95 595 65 HOH HOH . C 3 HOH A 96 596 11 HOH HOH . C 3 HOH A 97 597 47 HOH HOH . C 3 HOH A 98 598 61 HOH HOH . C 3 HOH A 99 599 113 HOH HOH . C 3 HOH A 100 600 93 HOH HOH . C 3 HOH A 101 601 53 HOH HOH . C 3 HOH A 102 602 14 HOH HOH . C 3 HOH A 103 603 123 HOH HOH . C 3 HOH A 104 604 95 HOH HOH . C 3 HOH A 105 605 16 HOH HOH . C 3 HOH A 106 606 24 HOH HOH . C 3 HOH A 107 607 49 HOH HOH . C 3 HOH A 108 608 60 HOH HOH . C 3 HOH A 109 609 97 HOH HOH . C 3 HOH A 110 610 84 HOH HOH . C 3 HOH A 111 611 85 HOH HOH . C 3 HOH A 112 612 78 HOH HOH . C 3 HOH A 113 613 13 HOH HOH . C 3 HOH A 114 614 91 HOH HOH . C 3 HOH A 115 615 18 HOH HOH . C 3 HOH A 116 616 103 HOH HOH . C 3 HOH A 117 617 141 HOH HOH . C 3 HOH A 118 618 109 HOH HOH . C 3 HOH A 119 619 17 HOH HOH . C 3 HOH A 120 620 22 HOH HOH . C 3 HOH A 121 621 135 HOH HOH . C 3 HOH A 122 622 121 HOH HOH . C 3 HOH A 123 623 130 HOH HOH . C 3 HOH A 124 624 143 HOH HOH . C 3 HOH A 125 625 75 HOH HOH . C 3 HOH A 126 626 98 HOH HOH . C 3 HOH A 127 627 139 HOH HOH . C 3 HOH A 128 628 67 HOH HOH . C 3 HOH A 129 629 125 HOH HOH . C 3 HOH A 130 630 132 HOH HOH . C 3 HOH A 131 631 64 HOH HOH . C 3 HOH A 132 632 40 HOH HOH . C 3 HOH A 133 633 73 HOH HOH . C 3 HOH A 134 634 71 HOH HOH . C 3 HOH A 135 635 56 HOH HOH . C 3 HOH A 136 636 145 HOH HOH . C 3 HOH A 137 637 72 HOH HOH . C 3 HOH A 138 638 74 HOH HOH . C 3 HOH A 139 639 34 HOH HOH . C 3 HOH A 140 640 62 HOH HOH . C 3 HOH A 141 641 144 HOH HOH . C 3 HOH A 142 642 101 HOH HOH . C 3 HOH A 143 643 133 HOH HOH . C 3 HOH A 144 644 146 HOH HOH . C 3 HOH A 145 645 142 HOH HOH . C 3 HOH A 146 646 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WEB . . . B 2 -33.94 -16.15 -13.189 1 22.53 ? C1 WEB 401 A 1 HETATM 2 O O1 WEB . . . B 2 -35.336 -15.848 -13.048 1 26.11 ? O1 WEB 401 A 1 HETATM 3 C C2 WEB . . . B 2 -33.161 -15.94 -11.882 1 25.04 ? C2 WEB 401 A 1 HETATM 4 O O2 WEB . . . B 2 -31.799 -16.119 -12.239 1 25.76 ? O2 WEB 401 A 1 HETATM 5 C C3 WEB . . . B 2 -33.336 -14.52 -11.346 1 23.75 ? C3 WEB 401 A 1 HETATM 6 O O3 WEB . . . B 2 -32.838 -13.555 -12.27 1 24.54 ? O3 WEB 401 A 1 HETATM 7 C C4 WEB . . . B 2 -32.669 -14.308 -9.988 1 22.14 ? C4 WEB 401 A 1 HETATM 8 O O4 WEB . . . B 2 -31.242 -14.306 -10.09 1 22.88 ? O4 WEB 401 A 1 HETATM 9 C C5 WEB . . . B 2 -33.106 -15.398 -9.026 1 24.84 ? C5 WEB 401 A 1 HETATM 10 O O5 WEB . . . B 2 -32.354 -15.253 -7.811 1 25.33 ? O5 WEB 401 A 1 HETATM 11 C C6 WEB . . . B 2 -32.895 -16.798 -9.639 1 25.25 ? C6 WEB 401 A 1 HETATM 12 O O6 WEB . . . B 2 -33.579 -16.914 -10.906 1 24.77 ? O6 WEB 401 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #