data_8WLV
#
_model_server_result.job_id            YV8QeAQAcEdmnrz9CIdfhQ 
_model_server_result.datetime_utc      '2025-06-30 05:44:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wlv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":201}' 
#
_entry.id    8WLV 
#
_exptl.entry_id    8WLV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              113.075 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1~{H}-1,3,5-triazine-2,4-dione 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.957 
_cell.angle_gamma         90 
_cell.entry_id            8WLV 
_cell.length_a            52.67 
_cell.length_b            109.47 
_cell.length_c            64.32 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WLV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,S,T 1 1 
C,D,L,M,N,O,P,Q,R,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 L N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 55 A HIS 56 1_555 G ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc2 A SG CYS 85 A CYS 86 1_555 G ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc3 A SG CYS 88 A CYS 89 1_555 G ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc4 B ND1 HIS 55 B HIS 56 1_555 K ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc5 B SG CYS 85 B CYS 86 1_555 K ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc6 B SG CYS 88 B CYS 89 1_555 K ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc7 C ND1 HIS 55 C HIS 56 1_555 O ZN ZN . C ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc8 C SG CYS 85 C CYS 86 1_555 O ZN ZN . C ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc9 C SG CYS 88 C CYS 89 1_555 O ZN ZN . C ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc10 D ND1 HIS 55 D HIS 56 1_555 R ZN ZN . D ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc11 D SG CYS 85 D CYS 86 1_555 R ZN ZN . D ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc12 D SG CYS 88 D CYS 89 1_555 R ZN ZN . D ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
#
_chem_comp.formula           'C3 H3 N3 O2' 
_chem_comp.formula_weight    113.075 
_chem_comp.id                WHC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1~{H}-1,3,5-triazine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     5-azauracil 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAG CAF WHC doub 389 n n 
CAF NAH WHC sing 390 n n 
CAF NAE WHC sing 391 n n 
NAH CAB WHC sing 392 n n 
NAE CAD WHC doub 393 n n 
CAB OAA WHC doub 394 n n 
CAB NAC WHC sing 395 n n 
CAD NAC WHC sing 396 n n 
NAH H1 WHC sing 397 n n 
NAC H2 WHC sing 398 n n 
CAD H3 WHC sing 399 n n 
#
_atom_sites.entry_id                     8WLV 
_atom_sites.fract_transf_matrix[1][1]    0.018986 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002993 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 WHC A 1 201 203 WHC DRG . 
F 3 GOL A 1 202 204 GOL GOL . 
G 4 ZN A 1 203 1 ZN ZN . 
H 2 WHC B 1 201 203 WHC DRG . 
I 3 GOL B 1 202 204 GOL GOL . 
J 3 GOL B 1 203 205 GOL GOL . 
K 4 ZN B 1 204 4 ZN ZN . 
L 2 WHC C 1 201 203 WHC DRG . 
M 3 GOL C 1 202 206 GOL GOL . 
N 3 GOL C 1 203 207 GOL GOL . 
O 4 ZN C 1 204 3 ZN ZN . 
P 2 WHC D 1 201 203 WHC DRG . 
Q 3 GOL D 1 202 204 GOL GOL . 
R 4 ZN D 1 203 2 ZN ZN . 
S 5 HOH A 1 301 98 HOH HOH . 
S 5 HOH A 2 302 87 HOH HOH . 
S 5 HOH A 3 303 80 HOH HOH . 
S 5 HOH A 4 304 91 HOH HOH . 
S 5 HOH A 5 305 29 HOH HOH . 
S 5 HOH A 6 306 95 HOH HOH . 
S 5 HOH A 7 307 27 HOH HOH . 
S 5 HOH A 8 308 128 HOH HOH . 
S 5 HOH A 9 309 17 HOH HOH . 
S 5 HOH A 10 310 144 HOH HOH . 
S 5 HOH A 11 311 22 HOH HOH . 
S 5 HOH A 12 312 2 HOH HOH . 
S 5 HOH A 13 313 78 HOH HOH . 
S 5 HOH A 14 314 34 HOH HOH . 
S 5 HOH A 15 315 20 HOH HOH . 
S 5 HOH A 16 316 51 HOH HOH . 
S 5 HOH A 17 317 64 HOH HOH . 
S 5 HOH A 18 318 11 HOH HOH . 
S 5 HOH A 19 319 94 HOH HOH . 
S 5 HOH A 20 320 102 HOH HOH . 
S 5 HOH A 21 321 141 HOH HOH . 
S 5 HOH A 22 322 122 HOH HOH . 
S 5 HOH A 23 323 129 HOH HOH . 
S 5 HOH A 24 324 132 HOH HOH . 
S 5 HOH A 25 325 119 HOH HOH . 
S 5 HOH A 26 326 101 HOH HOH . 
S 5 HOH A 27 327 85 HOH HOH . 
S 5 HOH A 28 328 82 HOH HOH . 
S 5 HOH A 29 329 70 HOH HOH . 
S 5 HOH A 30 330 54 HOH HOH . 
S 5 HOH A 31 331 62 HOH HOH . 
S 5 HOH A 32 332 81 HOH HOH . 
S 5 HOH A 33 333 47 HOH HOH . 
S 5 HOH A 34 334 74 HOH HOH . 
S 5 HOH A 35 335 142 HOH HOH . 
S 5 HOH A 36 336 108 HOH HOH . 
S 5 HOH A 37 337 31 HOH HOH . 
S 5 HOH A 38 338 68 HOH HOH . 
S 5 HOH A 39 339 111 HOH HOH . 
S 5 HOH A 40 340 32 HOH HOH . 
S 5 HOH A 41 341 104 HOH HOH . 
S 5 HOH A 42 342 9 HOH HOH . 
S 5 HOH A 43 343 126 HOH HOH . 
S 5 HOH A 44 344 123 HOH HOH . 
T 5 HOH B 1 301 106 HOH HOH . 
T 5 HOH B 2 302 88 HOH HOH . 
T 5 HOH B 3 303 143 HOH HOH . 
T 5 HOH B 4 304 107 HOH HOH . 
T 5 HOH B 5 305 130 HOH HOH . 
T 5 HOH B 6 306 26 HOH HOH . 
T 5 HOH B 7 307 92 HOH HOH . 
T 5 HOH B 8 308 199 HOH HOH . 
T 5 HOH B 9 309 109 HOH HOH . 
T 5 HOH B 10 310 67 HOH HOH . 
T 5 HOH B 11 311 127 HOH HOH . 
T 5 HOH B 12 312 79 HOH HOH . 
T 5 HOH B 13 313 135 HOH HOH . 
T 5 HOH B 14 314 89 HOH HOH . 
T 5 HOH B 15 315 86 HOH HOH . 
T 5 HOH B 16 316 30 HOH HOH . 
T 5 HOH B 17 317 40 HOH HOH . 
T 5 HOH B 18 318 36 HOH HOH . 
T 5 HOH B 19 319 69 HOH HOH . 
T 5 HOH B 20 320 19 HOH HOH . 
T 5 HOH B 21 321 75 HOH HOH . 
T 5 HOH B 22 322 25 HOH HOH . 
T 5 HOH B 23 323 48 HOH HOH . 
T 5 HOH B 24 324 72 HOH HOH . 
T 5 HOH B 25 325 56 HOH HOH . 
T 5 HOH B 26 326 118 HOH HOH . 
T 5 HOH B 27 327 41 HOH HOH . 
T 5 HOH B 28 328 58 HOH HOH . 
T 5 HOH B 29 329 24 HOH HOH . 
T 5 HOH B 30 330 105 HOH HOH . 
T 5 HOH B 31 331 83 HOH HOH . 
T 5 HOH B 32 332 50 HOH HOH . 
T 5 HOH B 33 333 139 HOH HOH . 
T 5 HOH B 34 334 90 HOH HOH . 
T 5 HOH B 35 335 116 HOH HOH . 
T 5 HOH B 36 336 113 HOH HOH . 
T 5 HOH B 37 337 73 HOH HOH . 
T 5 HOH B 38 338 140 HOH HOH . 
T 5 HOH B 39 339 97 HOH HOH . 
U 5 HOH C 1 301 61 HOH HOH . 
U 5 HOH C 2 302 145 HOH HOH . 
U 5 HOH C 3 303 5 HOH HOH . 
U 5 HOH C 4 304 59 HOH HOH . 
U 5 HOH C 5 305 63 HOH HOH . 
U 5 HOH C 6 306 124 HOH HOH . 
U 5 HOH C 7 307 8 HOH HOH . 
U 5 HOH C 8 308 6 HOH HOH . 
U 5 HOH C 9 309 138 HOH HOH . 
U 5 HOH C 10 310 7 HOH HOH . 
U 5 HOH C 11 311 49 HOH HOH . 
U 5 HOH C 12 312 1 HOH HOH . 
U 5 HOH C 13 313 35 HOH HOH . 
U 5 HOH C 14 314 46 HOH HOH . 
U 5 HOH C 15 315 99 HOH HOH . 
U 5 HOH C 16 316 55 HOH HOH . 
U 5 HOH C 17 317 23 HOH HOH . 
U 5 HOH C 18 318 39 HOH HOH . 
U 5 HOH C 19 319 12 HOH HOH . 
U 5 HOH C 20 320 13 HOH HOH . 
U 5 HOH C 21 321 15 HOH HOH . 
U 5 HOH C 22 322 121 HOH HOH . 
U 5 HOH C 23 323 77 HOH HOH . 
U 5 HOH C 24 324 45 HOH HOH . 
U 5 HOH C 25 325 14 HOH HOH . 
U 5 HOH C 26 326 114 HOH HOH . 
U 5 HOH C 27 327 115 HOH HOH . 
U 5 HOH C 28 328 137 HOH HOH . 
U 5 HOH C 29 329 125 HOH HOH . 
U 5 HOH C 30 330 96 HOH HOH . 
U 5 HOH C 31 331 112 HOH HOH . 
U 5 HOH C 32 332 117 HOH HOH . 
V 5 HOH D 1 301 21 HOH HOH . 
V 5 HOH D 2 302 146 HOH HOH . 
V 5 HOH D 3 303 66 HOH HOH . 
V 5 HOH D 4 304 57 HOH HOH . 
V 5 HOH D 5 305 93 HOH HOH . 
V 5 HOH D 6 306 134 HOH HOH . 
V 5 HOH D 7 307 65 HOH HOH . 
V 5 HOH D 8 308 43 HOH HOH . 
V 5 HOH D 9 309 136 HOH HOH . 
V 5 HOH D 10 310 4 HOH HOH . 
V 5 HOH D 11 311 28 HOH HOH . 
V 5 HOH D 12 312 110 HOH HOH . 
V 5 HOH D 13 313 133 HOH HOH . 
V 5 HOH D 14 314 100 HOH HOH . 
V 5 HOH D 15 315 53 HOH HOH . 
V 5 HOH D 16 316 84 HOH HOH . 
V 5 HOH D 17 317 103 HOH HOH . 
V 5 HOH D 18 318 16 HOH HOH . 
V 5 HOH D 19 319 37 HOH HOH . 
V 5 HOH D 20 320 38 HOH HOH . 
V 5 HOH D 21 321 3 HOH HOH . 
V 5 HOH D 22 322 120 HOH HOH . 
V 5 HOH D 23 323 18 HOH HOH . 
V 5 HOH D 24 324 76 HOH HOH . 
V 5 HOH D 25 325 10 HOH HOH . 
V 5 HOH D 26 326 52 HOH HOH . 
V 5 HOH D 27 327 60 HOH HOH . 
V 5 HOH D 28 328 42 HOH HOH . 
V 5 HOH D 29 329 71 HOH HOH . 
V 5 HOH D 30 330 33 HOH HOH . 
V 5 HOH D 31 331 44 HOH HOH . 
V 5 HOH D 32 332 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAG WHC . . . P 2 -22.419 43.301 -30.897 1 30.18 0 OAG WHC 201 D 1 
HETATM 2 C CAF WHC . . . P 2 -22.163 42.821 -32.005 1 30.23 0 CAF WHC 201 D 1 
HETATM 3 N NAH WHC . . . P 2 -20.913 43.09 -32.564 1 29.59 0 NAH WHC 201 D 1 
HETATM 4 C CAB WHC . . . P 2 -20.557 42.613 -33.846 1 30.57 0 CAB WHC 201 D 1 
HETATM 5 O OAA WHC . . . P 2 -19.422 42.894 -34.26 1 28.56 0 OAA WHC 201 D 1 
HETATM 6 N NAC WHC . . . P 2 -21.442 41.861 -34.543 1 28.85 0 NAC WHC 201 D 1 
HETATM 7 C CAD WHC . . . P 2 -22.714 41.601 -33.99 1 32.1 0 CAD WHC 201 D 1 
HETATM 8 N NAE WHC . . . P 2 -23.085 42.067 -32.762 1 32.51 0 NAE WHC 201 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           372 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           8 
#