data_8WLX # _model_server_result.job_id g8aNtgJQ9ShPQtoAJUg-uA _model_server_result.datetime_utc '2024-10-10 07:22:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":205}' # _entry.id 8WLX # _exptl.entry_id 8WLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WLX _cell.length_a 63.66 _cell.length_b 108.56 _cell.length_c 53.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 55 A HIS 56 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A SG CYS 85 A CYS 86 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A SG CYS 88 A CYS 89 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 F ZN ZN . A ZN 204 1_555 O O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc5 B ND1 HIS 55 B HIS 56 1_555 N ZN ZN . B ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc6 B SG CYS 85 B CYS 86 1_555 N ZN ZN . B ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc7 B SG CYS 88 B CYS 89 1_555 N ZN ZN . B ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 N ZN ZN . B ZN 208 1_555 P O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 8WLX _atom_sites.fract_transf_matrix[1][1] 0.015708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 201 202 GOL GOL . D 2 GOL A 1 202 203 GOL GOL . E 2 GOL A 1 203 205 GOL GOL . F 3 ZN A 1 204 1 ZN ZN . G 4 ACT B 1 201 203 ACT ACT . H 2 GOL B 1 202 204 GOL GOL . I 2 GOL B 1 203 205 GOL GOL . J 2 GOL B 1 204 207 GOL GOL . K 2 GOL B 1 205 208 GOL GOL . L 2 GOL B 1 206 209 GOL GOL . M 4 ACT B 1 207 210 ACT ACT . N 3 ZN B 1 208 2 ZN ZN . O 5 HOH A 1 301 39 HOH HOH . O 5 HOH A 2 302 193 HOH HOH . O 5 HOH A 3 303 44 HOH HOH . O 5 HOH A 4 304 93 HOH HOH . O 5 HOH A 5 305 145 HOH HOH . O 5 HOH A 6 306 38 HOH HOH . O 5 HOH A 7 307 10 HOH HOH . O 5 HOH A 8 308 5 HOH HOH . O 5 HOH A 9 309 14 HOH HOH . O 5 HOH A 10 310 242 HOH HOH . O 5 HOH A 11 311 1 HOH HOH . O 5 HOH A 12 312 72 HOH HOH . O 5 HOH A 13 313 175 HOH HOH . O 5 HOH A 14 314 146 HOH HOH . O 5 HOH A 15 315 128 HOH HOH . O 5 HOH A 16 316 151 HOH HOH . O 5 HOH A 17 317 235 HOH HOH . O 5 HOH A 18 318 12 HOH HOH . O 5 HOH A 19 319 41 HOH HOH . O 5 HOH A 20 320 17 HOH HOH . O 5 HOH A 21 321 132 HOH HOH . O 5 HOH A 22 322 161 HOH HOH . O 5 HOH A 23 323 55 HOH HOH . O 5 HOH A 24 324 24 HOH HOH . O 5 HOH A 25 325 60 HOH HOH . O 5 HOH A 26 326 130 HOH HOH . O 5 HOH A 27 327 100 HOH HOH . O 5 HOH A 28 328 70 HOH HOH . O 5 HOH A 29 329 191 HOH HOH . O 5 HOH A 30 330 19 HOH HOH . O 5 HOH A 31 331 169 HOH HOH . O 5 HOH A 32 332 140 HOH HOH . O 5 HOH A 33 333 13 HOH HOH . O 5 HOH A 34 334 30 HOH HOH . O 5 HOH A 35 335 104 HOH HOH . O 5 HOH A 36 336 147 HOH HOH . O 5 HOH A 37 337 188 HOH HOH . O 5 HOH A 38 338 53 HOH HOH . O 5 HOH A 39 339 29 HOH HOH . O 5 HOH A 40 340 28 HOH HOH . O 5 HOH A 41 341 165 HOH HOH . O 5 HOH A 42 342 160 HOH HOH . O 5 HOH A 43 343 99 HOH HOH . O 5 HOH A 44 344 233 HOH HOH . O 5 HOH A 45 345 248 HOH HOH . O 5 HOH A 46 346 210 HOH HOH . O 5 HOH A 47 347 143 HOH HOH . O 5 HOH A 48 348 25 HOH HOH . O 5 HOH A 49 349 77 HOH HOH . O 5 HOH A 50 350 162 HOH HOH . O 5 HOH A 51 351 123 HOH HOH . O 5 HOH A 52 352 27 HOH HOH . O 5 HOH A 53 353 51 HOH HOH . O 5 HOH A 54 354 225 HOH HOH . O 5 HOH A 55 355 33 HOH HOH . O 5 HOH A 56 356 139 HOH HOH . O 5 HOH A 57 357 218 HOH HOH . O 5 HOH A 58 358 209 HOH HOH . O 5 HOH A 59 359 240 HOH HOH . O 5 HOH A 60 360 239 HOH HOH . O 5 HOH A 61 361 182 HOH HOH . O 5 HOH A 62 362 184 HOH HOH . O 5 HOH A 63 363 50 HOH HOH . O 5 HOH A 64 364 101 HOH HOH . O 5 HOH A 65 365 6 HOH HOH . O 5 HOH A 66 366 96 HOH HOH . O 5 HOH A 67 367 208 HOH HOH . O 5 HOH A 68 368 241 HOH HOH . O 5 HOH A 69 369 166 HOH HOH . O 5 HOH A 70 370 54 HOH HOH . O 5 HOH A 71 371 75 HOH HOH . O 5 HOH A 72 372 115 HOH HOH . O 5 HOH A 73 373 244 HOH HOH . O 5 HOH A 74 374 42 HOH HOH . O 5 HOH A 75 375 114 HOH HOH . O 5 HOH A 76 376 180 HOH HOH . O 5 HOH A 77 377 92 HOH HOH . O 5 HOH A 78 378 26 HOH HOH . O 5 HOH A 79 379 148 HOH HOH . O 5 HOH A 80 380 249 HOH HOH . O 5 HOH A 81 381 9 HOH HOH . O 5 HOH A 82 382 35 HOH HOH . O 5 HOH A 83 383 201 HOH HOH . O 5 HOH A 84 384 179 HOH HOH . O 5 HOH A 85 385 127 HOH HOH . O 5 HOH A 86 386 196 HOH HOH . O 5 HOH A 87 387 153 HOH HOH . O 5 HOH A 88 388 205 HOH HOH . O 5 HOH A 89 389 106 HOH HOH . O 5 HOH A 90 390 111 HOH HOH . O 5 HOH A 91 391 168 HOH HOH . O 5 HOH A 92 392 112 HOH HOH . O 5 HOH A 93 393 167 HOH HOH . O 5 HOH A 94 394 109 HOH HOH . O 5 HOH A 95 395 227 HOH HOH . O 5 HOH A 96 396 64 HOH HOH . O 5 HOH A 97 397 226 HOH HOH . O 5 HOH A 98 398 237 HOH HOH . O 5 HOH A 99 399 57 HOH HOH . O 5 HOH A 100 400 238 HOH HOH . O 5 HOH A 101 401 113 HOH HOH . O 5 HOH A 102 402 86 HOH HOH . O 5 HOH A 103 403 117 HOH HOH . O 5 HOH A 104 404 171 HOH HOH . O 5 HOH A 105 405 79 HOH HOH . O 5 HOH A 106 406 186 HOH HOH . O 5 HOH A 107 407 198 HOH HOH . O 5 HOH A 108 408 131 HOH HOH . O 5 HOH A 109 409 192 HOH HOH . O 5 HOH A 110 410 206 HOH HOH . O 5 HOH A 111 411 138 HOH HOH . O 5 HOH A 112 412 118 HOH HOH . O 5 HOH A 113 413 245 HOH HOH . O 5 HOH A 114 414 155 HOH HOH . O 5 HOH A 115 415 253 HOH HOH . O 5 HOH A 116 416 222 HOH HOH . O 5 HOH A 117 417 45 HOH HOH . O 5 HOH A 118 418 103 HOH HOH . P 5 HOH B 1 301 108 HOH HOH . P 5 HOH B 2 302 224 HOH HOH . P 5 HOH B 3 303 74 HOH HOH . P 5 HOH B 4 304 158 HOH HOH . P 5 HOH B 5 305 177 HOH HOH . P 5 HOH B 6 306 141 HOH HOH . P 5 HOH B 7 307 126 HOH HOH . P 5 HOH B 8 308 81 HOH HOH . P 5 HOH B 9 309 49 HOH HOH . P 5 HOH B 10 310 232 HOH HOH . P 5 HOH B 11 311 76 HOH HOH . P 5 HOH B 12 312 230 HOH HOH . P 5 HOH B 13 313 213 HOH HOH . P 5 HOH B 14 314 203 HOH HOH . P 5 HOH B 15 315 8 HOH HOH . P 5 HOH B 16 316 97 HOH HOH . P 5 HOH B 17 317 194 HOH HOH . P 5 HOH B 18 318 4 HOH HOH . P 5 HOH B 19 319 34 HOH HOH . P 5 HOH B 20 320 229 HOH HOH . P 5 HOH B 21 321 2 HOH HOH . P 5 HOH B 22 322 84 HOH HOH . P 5 HOH B 23 323 214 HOH HOH . P 5 HOH B 24 324 122 HOH HOH . P 5 HOH B 25 325 102 HOH HOH . P 5 HOH B 26 326 20 HOH HOH . P 5 HOH B 27 327 40 HOH HOH . P 5 HOH B 28 328 174 HOH HOH . P 5 HOH B 29 329 187 HOH HOH . P 5 HOH B 30 330 73 HOH HOH . P 5 HOH B 31 331 228 HOH HOH . P 5 HOH B 32 332 199 HOH HOH . P 5 HOH B 33 333 58 HOH HOH . P 5 HOH B 34 334 85 HOH HOH . P 5 HOH B 35 335 71 HOH HOH . P 5 HOH B 36 336 23 HOH HOH . P 5 HOH B 37 337 69 HOH HOH . P 5 HOH B 38 338 195 HOH HOH . P 5 HOH B 39 339 136 HOH HOH . P 5 HOH B 40 340 36 HOH HOH . P 5 HOH B 41 341 154 HOH HOH . P 5 HOH B 42 342 200 HOH HOH . P 5 HOH B 43 343 94 HOH HOH . P 5 HOH B 44 344 48 HOH HOH . P 5 HOH B 45 345 78 HOH HOH . P 5 HOH B 46 346 16 HOH HOH . P 5 HOH B 47 347 163 HOH HOH . P 5 HOH B 48 348 43 HOH HOH . P 5 HOH B 49 349 156 HOH HOH . P 5 HOH B 50 350 149 HOH HOH . P 5 HOH B 51 351 133 HOH HOH . P 5 HOH B 52 352 31 HOH HOH . P 5 HOH B 53 353 150 HOH HOH . P 5 HOH B 54 354 223 HOH HOH . P 5 HOH B 55 355 80 HOH HOH . P 5 HOH B 56 356 135 HOH HOH . P 5 HOH B 57 357 52 HOH HOH . P 5 HOH B 58 358 21 HOH HOH . P 5 HOH B 59 359 47 HOH HOH . P 5 HOH B 60 360 22 HOH HOH . P 5 HOH B 61 361 110 HOH HOH . P 5 HOH B 62 362 63 HOH HOH . P 5 HOH B 63 363 83 HOH HOH . P 5 HOH B 64 364 181 HOH HOH . P 5 HOH B 65 365 215 HOH HOH . P 5 HOH B 66 366 178 HOH HOH . P 5 HOH B 67 367 119 HOH HOH . P 5 HOH B 68 368 157 HOH HOH . P 5 HOH B 69 369 105 HOH HOH . P 5 HOH B 70 370 159 HOH HOH . P 5 HOH B 71 371 247 HOH HOH . P 5 HOH B 72 372 3 HOH HOH . P 5 HOH B 73 373 87 HOH HOH . P 5 HOH B 74 374 217 HOH HOH . P 5 HOH B 75 375 221 HOH HOH . P 5 HOH B 76 376 46 HOH HOH . P 5 HOH B 77 377 66 HOH HOH . P 5 HOH B 78 378 59 HOH HOH . P 5 HOH B 79 379 254 HOH HOH . P 5 HOH B 80 380 107 HOH HOH . P 5 HOH B 81 381 65 HOH HOH . P 5 HOH B 82 382 56 HOH HOH . P 5 HOH B 83 383 62 HOH HOH . P 5 HOH B 84 384 144 HOH HOH . P 5 HOH B 85 385 67 HOH HOH . P 5 HOH B 86 386 152 HOH HOH . P 5 HOH B 87 387 172 HOH HOH . P 5 HOH B 88 388 18 HOH HOH . P 5 HOH B 89 389 124 HOH HOH . P 5 HOH B 90 390 61 HOH HOH . P 5 HOH B 91 391 15 HOH HOH . P 5 HOH B 92 392 170 HOH HOH . P 5 HOH B 93 393 7 HOH HOH . P 5 HOH B 94 394 121 HOH HOH . P 5 HOH B 95 395 11 HOH HOH . P 5 HOH B 96 396 116 HOH HOH . P 5 HOH B 97 397 32 HOH HOH . P 5 HOH B 98 398 207 HOH HOH . P 5 HOH B 99 399 68 HOH HOH . P 5 HOH B 100 400 204 HOH HOH . P 5 HOH B 101 401 91 HOH HOH . P 5 HOH B 102 402 95 HOH HOH . P 5 HOH B 103 403 142 HOH HOH . P 5 HOH B 104 404 202 HOH HOH . P 5 HOH B 105 405 185 HOH HOH . P 5 HOH B 106 406 120 HOH HOH . P 5 HOH B 107 407 216 HOH HOH . P 5 HOH B 108 408 246 HOH HOH . P 5 HOH B 109 409 251 HOH HOH . P 5 HOH B 110 410 211 HOH HOH . P 5 HOH B 111 411 176 HOH HOH . P 5 HOH B 112 412 164 HOH HOH . P 5 HOH B 113 413 37 HOH HOH . P 5 HOH B 114 414 219 HOH HOH . P 5 HOH B 115 415 134 HOH HOH . P 5 HOH B 116 416 173 HOH HOH . P 5 HOH B 117 417 183 HOH HOH . P 5 HOH B 118 418 252 HOH HOH . P 5 HOH B 119 419 234 HOH HOH . P 5 HOH B 120 420 212 HOH HOH . P 5 HOH B 121 421 98 HOH HOH . P 5 HOH B 122 422 129 HOH HOH . P 5 HOH B 123 423 197 HOH HOH . P 5 HOH B 124 424 250 HOH HOH . P 5 HOH B 125 425 137 HOH HOH . P 5 HOH B 126 426 82 HOH HOH . P 5 HOH B 127 427 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 2 57.465 44.859 12.233 1 56.08 0 C1 GOL 205 B 1 HETATM 2 O O1 GOL . . . K 2 57.246 46.073 11.516 1 44.5 0 O1 GOL 205 B 1 HETATM 3 C C2 GOL . . . K 2 58.857 44.301 12.025 1 61.1 0 C2 GOL 205 B 1 HETATM 4 O O2 GOL . . . K 2 59.803 45.129 12.702 1 63.51 0 O2 GOL 205 B 1 HETATM 5 C C3 GOL . . . K 2 59.019 42.873 12.504 1 69.38 0 C3 GOL 205 B 1 HETATM 6 O O3 GOL . . . K 2 57.838 42.1 12.303 1 74.68 0 O3 GOL 205 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #