data_8WMG # _model_server_result.job_id pSr2NFDq9hxsS334XtEdnA _model_server_result.datetime_utc '2024-11-05 06:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 8WMG # _exptl.entry_id 8WMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WMG _cell.length_a 111.928 _cell.length_b 117.486 _cell.length_c 131.864 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C3T WRW . A WRW 301 1_555 D N ETA . A ETA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 C C3U WRW . A WRW 301 1_555 F N ETA . A ETA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C3V WRW . A WRW 301 1_555 H N ETA . A ETA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale4 D O ETA . A ETA 302 1_555 E C1 MAN . A MAN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale5 F O ETA . A ETA 304 1_555 G C1 MAN . A MAN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 H O ETA . A ETA 306 1_555 I C1 MAN . A MAN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 J MN MN . A MN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 J MN MN . A MN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 J MN MN . A MN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 K CA CA . A CA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 J MN MN . A MN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc10 J MN MN . A MN 308 1_555 N O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc11 J MN MN . A MN 308 1_555 N O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc12 K CA CA . A CA 309 1_555 N O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc13 K CA CA . A CA 309 1_555 N O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc14 B OE2 GLU 8 B GLU 8 1_555 L MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc15 B OD2 ASP 10 B ASP 10 1_555 L MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc16 B OD1 ASP 10 B ASP 10 1_555 M CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc17 B OD2 ASP 10 B ASP 10 1_555 M CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc18 B O TYR 12 B TYR 12 1_555 M CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc19 B OD1 ASN 14 B ASN 14 1_555 M CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc20 B OD1 ASP 19 B ASP 19 1_555 L MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc21 B OD2 ASP 19 B ASP 19 1_555 M CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc22 B NE2 HIS 24 B HIS 24 1_555 L MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc23 L MN MN . B MN 301 1_555 O O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc24 L MN MN . B MN 301 1_555 O O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc25 M CA CA . B CA 302 1_555 O O HOH . B HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc26 M CA CA . B CA 302 1_555 O O HOH . B HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 215 n n C1 O1 MAN sing 216 n n C1 O5 MAN sing 217 n n C1 H1 MAN sing 218 n n C2 C3 MAN sing 219 n n C2 O2 MAN sing 220 n n C2 H2 MAN sing 221 n n C3 C4 MAN sing 222 n n C3 O3 MAN sing 223 n n C3 H3 MAN sing 224 n n C4 C5 MAN sing 225 n n C4 O4 MAN sing 226 n n C4 H4 MAN sing 227 n n C5 C6 MAN sing 228 n n C5 O5 MAN sing 229 n n C5 H5 MAN sing 230 n n C6 O6 MAN sing 231 n n C6 H61 MAN sing 232 n n C6 H62 MAN sing 233 n n O1 HO1 MAN sing 234 n n O2 HO2 MAN sing 235 n n O3 HO3 MAN sing 236 n n O4 HO4 MAN sing 237 n n O6 HO6 MAN sing 238 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8WMG _atom_sites.fract_transf_matrix[1][1] 0.008934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WRW A 1 301 301 WRW Man . D 3 ETA A 1 302 301 ETA Man . E 4 MAN A 1 303 301 MAN Man . F 3 ETA A 1 304 301 ETA Man . G 4 MAN A 1 305 301 MAN Man . H 3 ETA A 1 306 301 ETA Man . I 4 MAN A 1 307 301 MAN Man . J 5 MN A 1 308 1 MN MN . K 6 CA A 1 309 1 CA CA . L 5 MN B 1 301 2 MN MN . M 6 CA B 1 302 2 CA CA . N 7 HOH A 1 401 127 HOH HOH . N 7 HOH A 2 402 121 HOH HOH . N 7 HOH A 3 403 19 HOH HOH . N 7 HOH A 4 404 126 HOH HOH . N 7 HOH A 5 405 97 HOH HOH . N 7 HOH A 6 406 43 HOH HOH . N 7 HOH A 7 407 87 HOH HOH . N 7 HOH A 8 408 60 HOH HOH . N 7 HOH A 9 409 77 HOH HOH . N 7 HOH A 10 410 7 HOH HOH . N 7 HOH A 11 411 124 HOH HOH . N 7 HOH A 12 412 37 HOH HOH . N 7 HOH A 13 413 18 HOH HOH . N 7 HOH A 14 414 110 HOH HOH . N 7 HOH A 15 415 51 HOH HOH . N 7 HOH A 16 416 26 HOH HOH . N 7 HOH A 17 417 122 HOH HOH . N 7 HOH A 18 418 112 HOH HOH . N 7 HOH A 19 419 90 HOH HOH . N 7 HOH A 20 420 1 HOH HOH . N 7 HOH A 21 421 5 HOH HOH . N 7 HOH A 22 422 13 HOH HOH . N 7 HOH A 23 423 39 HOH HOH . N 7 HOH A 24 424 15 HOH HOH . N 7 HOH A 25 425 69 HOH HOH . N 7 HOH A 26 426 10 HOH HOH . N 7 HOH A 27 427 14 HOH HOH . N 7 HOH A 28 428 25 HOH HOH . N 7 HOH A 29 429 88 HOH HOH . N 7 HOH A 30 430 53 HOH HOH . N 7 HOH A 31 431 59 HOH HOH . N 7 HOH A 32 432 9 HOH HOH . N 7 HOH A 33 433 22 HOH HOH . N 7 HOH A 34 434 40 HOH HOH . N 7 HOH A 35 435 80 HOH HOH . N 7 HOH A 36 436 3 HOH HOH . N 7 HOH A 37 437 86 HOH HOH . N 7 HOH A 38 438 24 HOH HOH . N 7 HOH A 39 439 33 HOH HOH . N 7 HOH A 40 440 81 HOH HOH . N 7 HOH A 41 441 56 HOH HOH . N 7 HOH A 42 442 23 HOH HOH . N 7 HOH A 43 443 120 HOH HOH . N 7 HOH A 44 444 125 HOH HOH . N 7 HOH A 45 445 107 HOH HOH . N 7 HOH A 46 446 91 HOH HOH . N 7 HOH A 47 447 113 HOH HOH . N 7 HOH A 48 448 62 HOH HOH . N 7 HOH A 49 449 21 HOH HOH . N 7 HOH A 50 450 117 HOH HOH . N 7 HOH A 51 451 29 HOH HOH . N 7 HOH A 52 452 89 HOH HOH . N 7 HOH A 53 453 28 HOH HOH . N 7 HOH A 54 454 71 HOH HOH . N 7 HOH A 55 455 102 HOH HOH . N 7 HOH A 56 456 128 HOH HOH . N 7 HOH A 57 457 45 HOH HOH . N 7 HOH A 58 458 31 HOH HOH . N 7 HOH A 59 459 84 HOH HOH . N 7 HOH A 60 460 111 HOH HOH . N 7 HOH A 61 461 130 HOH HOH . N 7 HOH A 62 462 52 HOH HOH . N 7 HOH A 63 463 72 HOH HOH . N 7 HOH A 64 464 68 HOH HOH . N 7 HOH A 65 465 61 HOH HOH . N 7 HOH A 66 466 73 HOH HOH . N 7 HOH A 67 467 106 HOH HOH . N 7 HOH A 68 468 79 HOH HOH . N 7 HOH A 69 469 75 HOH HOH . N 7 HOH A 70 470 104 HOH HOH . N 7 HOH A 71 471 92 HOH HOH . N 7 HOH A 72 472 116 HOH HOH . N 7 HOH A 73 473 49 HOH HOH . N 7 HOH A 74 474 74 HOH HOH . N 7 HOH A 75 475 76 HOH HOH . N 7 HOH A 76 476 83 HOH HOH . N 7 HOH A 77 477 98 HOH HOH . N 7 HOH A 78 478 95 HOH HOH . N 7 HOH A 79 479 109 HOH HOH . O 7 HOH B 1 401 38 HOH HOH . O 7 HOH B 2 402 123 HOH HOH . O 7 HOH B 3 403 119 HOH HOH . O 7 HOH B 4 404 129 HOH HOH . O 7 HOH B 5 405 101 HOH HOH . O 7 HOH B 6 406 118 HOH HOH . O 7 HOH B 7 407 30 HOH HOH . O 7 HOH B 8 408 20 HOH HOH . O 7 HOH B 9 409 103 HOH HOH . O 7 HOH B 10 410 46 HOH HOH . O 7 HOH B 11 411 12 HOH HOH . O 7 HOH B 12 412 99 HOH HOH . O 7 HOH B 13 413 42 HOH HOH . O 7 HOH B 14 414 11 HOH HOH . O 7 HOH B 15 415 2 HOH HOH . O 7 HOH B 16 416 17 HOH HOH . O 7 HOH B 17 417 8 HOH HOH . O 7 HOH B 18 418 44 HOH HOH . O 7 HOH B 19 419 16 HOH HOH . O 7 HOH B 20 420 34 HOH HOH . O 7 HOH B 21 421 36 HOH HOH . O 7 HOH B 22 422 4 HOH HOH . O 7 HOH B 23 423 63 HOH HOH . O 7 HOH B 24 424 115 HOH HOH . O 7 HOH B 25 425 50 HOH HOH . O 7 HOH B 26 426 105 HOH HOH . O 7 HOH B 27 427 108 HOH HOH . O 7 HOH B 28 428 54 HOH HOH . O 7 HOH B 29 429 6 HOH HOH . O 7 HOH B 30 430 114 HOH HOH . O 7 HOH B 31 431 35 HOH HOH . O 7 HOH B 32 432 93 HOH HOH . O 7 HOH B 33 433 64 HOH HOH . O 7 HOH B 34 434 82 HOH HOH . O 7 HOH B 35 435 65 HOH HOH . O 7 HOH B 36 436 55 HOH HOH . O 7 HOH B 37 437 67 HOH HOH . O 7 HOH B 38 438 70 HOH HOH . O 7 HOH B 39 439 57 HOH HOH . O 7 HOH B 40 440 27 HOH HOH . O 7 HOH B 41 441 96 HOH HOH . O 7 HOH B 42 442 66 HOH HOH . O 7 HOH B 43 443 48 HOH HOH . O 7 HOH B 44 444 58 HOH HOH . O 7 HOH B 45 445 78 HOH HOH . O 7 HOH B 46 446 94 HOH HOH . O 7 HOH B 47 447 41 HOH HOH . O 7 HOH B 48 448 47 HOH HOH . O 7 HOH B 49 449 100 HOH HOH . O 7 HOH B 50 450 85 HOH HOH . O 7 HOH B 51 451 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . G 4 29.485 6.604 10.201 1 22.79 ? C1 MAN 305 A 1 HETATM 2 C C2 MAN . . . G 4 29.023 8.003 10.446 1 22.72 ? C2 MAN 305 A 1 HETATM 3 C C3 MAN . . . G 4 30.21 8.989 10.211 1 26.69 ? C3 MAN 305 A 1 HETATM 4 C C4 MAN . . . G 4 31.509 8.642 10.957 1 24.97 ? C4 MAN 305 A 1 HETATM 5 C C5 MAN . . . G 4 31.82 7.148 10.698 1 25.67 ? C5 MAN 305 A 1 HETATM 6 C C6 MAN . . . G 4 32.994 6.653 11.521 1 23.3 ? C6 MAN 305 A 1 HETATM 7 O O2 MAN . . . G 4 28.723 8.095 11.817 1 23.77 ? O2 MAN 305 A 1 HETATM 8 O O3 MAN . . . G 4 29.831 10.33 10.52 1 25.65 ? O3 MAN 305 A 1 HETATM 9 O O4 MAN . . . G 4 32.559 9.519 10.426 1 25.81 ? O4 MAN 305 A 1 HETATM 10 O O5 MAN . . . G 4 30.647 6.278 10.968 1 25.94 ? O5 MAN 305 A 1 HETATM 11 O O6 MAN . . . G 4 32.634 6.695 12.904 1 23.48 ? O6 MAN 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #