data_8WMK
#
_model_server_result.job_id            qEXaLm7ZotQXfJQ8YCcHzQ 
_model_server_result.datetime_utc      '2024-11-13 14:30:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8WMK 
#
_exptl.entry_id    8WMK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.323 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[3-(4-carboxyphenyl)phenyl]benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          128.14 
_cell.angle_gamma         90 
_cell.entry_id            8WMK 
_cell.length_a            117.715 
_cell.length_b            113.841 
_cell.length_c            83.206 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -51.386787 0 65.441857 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C3T WU0 . A WU0 301 1_555 D N ETA . A ETA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 C C3U WU0 . A WU0 301 1_555 F N ETA . A ETA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 D O ETA . A ETA 302 1_555 E C1 MAN . A MAN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale4 F O ETA . A ETA 304 1_555 G C1 MAN . A MAN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 H MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 H MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc5 A O TYR 12 A TYR 12 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 H MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 H MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc10 H MN MN . A MN 306 1_555 L O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc11 H MN MN . A MN 306 1_555 L O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc12 I CA CA . A CA 307 1_555 L O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc13 I CA CA . A CA 307 1_555 L O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc14 B OE2 GLU 8 B GLU 8 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc15 B OD2 ASP 10 B ASP 10 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc16 B OD1 ASP 10 B ASP 10 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc17 B OD2 ASP 10 B ASP 10 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc18 B O TYR 12 B TYR 12 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc19 B OD1 ASN 14 B ASN 14 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc20 B OD1 ASP 19 B ASP 19 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc21 B OD2 ASP 19 B ASP 19 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc22 B NE2 HIS 24 B HIS 24 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc23 J MN MN . B MN 301 1_555 M O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc24 J MN MN . B MN 301 1_555 M O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc25 K CA CA . B CA 302 1_555 M O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc26 K CA CA . B CA 302 1_555 M O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
#
_chem_comp.formula           'C20 H14 O4' 
_chem_comp.formula_weight    318.323 
_chem_comp.id                WU0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[3-(4-carboxyphenyl)phenyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "[1,1':3',1''-Terphenyl]-4,4''-dicarboxylic acid" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2U C3U WU0 doub 397 n n 
C3U C25 WU0 sing 398 n n 
C24 C25 WU0 doub 399 n y 
C24 C23 WU0 sing 400 n y 
C25 C26 WU0 sing 401 n y 
C23 C22 WU0 doub 402 n y 
C26 C27 WU0 doub 403 n y 
C31 C30 WU0 doub 404 n y 
C31 C32 WU0 sing 405 n y 
C22 C27 WU0 sing 406 n y 
C22 C32 WU0 sing 407 n n 
C30 C29 WU0 sing 408 n y 
C32 C33 WU0 doub 409 n y 
C29 C28 WU0 doub 410 n y 
C33 C28 WU0 sing 411 n y 
C28 C10 WU0 sing 412 n n 
C10 C15 WU0 doub 413 n y 
C10 C11 WU0 sing 414 n y 
C15 C14 WU0 sing 415 n y 
C11 C12 WU0 doub 416 n y 
C14 C13 WU0 doub 417 n y 
C12 C13 WU0 sing 418 n y 
C13 C3T WU0 sing 419 n n 
C3T O2T WU0 doub 420 n n 
C33 H1 WU0 sing 421 n n 
C15 H2 WU0 sing 422 n n 
C14 H3 WU0 sing 423 n n 
C12 H4 WU0 sing 424 n n 
C11 H5 WU0 sing 425 n n 
C27 H6 WU0 sing 426 n n 
C26 H7 WU0 sing 427 n n 
C24 H8 WU0 sing 428 n n 
C23 H9 WU0 sing 429 n n 
C31 H10 WU0 sing 430 n n 
C30 H11 WU0 sing 431 n n 
C29 H12 WU0 sing 432 n n 
C3U O2 WU0 sing 433 n n 
C3T O1 WU0 sing 434 n n 
O2 H13 WU0 sing 435 n n 
O1 H14 WU0 sing 436 n n 
#
_atom_sites.entry_id                     8WMK 
_atom_sites.fract_transf_matrix[1][1]    0.008495 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00667 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WU0 A 1 301 301 WU0 Man . 
D 3 ETA A 1 302 301 ETA Man . 
E 4 MAN A 1 303 301 MAN Man . 
F 3 ETA A 1 304 301 ETA Man . 
G 4 MAN A 1 305 301 MAN Man . 
H 5 MN A 1 306 1 MN MN . 
I 6 CA A 1 307 1 CA CA . 
J 5 MN B 1 301 2 MN MN . 
K 6 CA B 1 302 2 CA CA . 
L 7 HOH A 1 401 36 HOH HOH . 
L 7 HOH A 2 402 14 HOH HOH . 
L 7 HOH A 3 403 40 HOH HOH . 
L 7 HOH A 4 404 59 HOH HOH . 
L 7 HOH A 5 405 66 HOH HOH . 
L 7 HOH A 6 406 44 HOH HOH . 
L 7 HOH A 7 407 9 HOH HOH . 
L 7 HOH A 8 408 53 HOH HOH . 
L 7 HOH A 9 409 7 HOH HOH . 
L 7 HOH A 10 410 6 HOH HOH . 
L 7 HOH A 11 411 54 HOH HOH . 
L 7 HOH A 12 412 18 HOH HOH . 
L 7 HOH A 13 413 21 HOH HOH . 
L 7 HOH A 14 414 72 HOH HOH . 
L 7 HOH A 15 415 23 HOH HOH . 
L 7 HOH A 16 416 10 HOH HOH . 
L 7 HOH A 17 417 5 HOH HOH . 
L 7 HOH A 18 418 31 HOH HOH . 
L 7 HOH A 19 419 8 HOH HOH . 
L 7 HOH A 20 420 3 HOH HOH . 
L 7 HOH A 21 421 39 HOH HOH . 
L 7 HOH A 22 422 29 HOH HOH . 
L 7 HOH A 23 423 43 HOH HOH . 
L 7 HOH A 24 424 11 HOH HOH . 
L 7 HOH A 25 425 32 HOH HOH . 
L 7 HOH A 26 426 49 HOH HOH . 
L 7 HOH A 27 427 27 HOH HOH . 
L 7 HOH A 28 428 30 HOH HOH . 
L 7 HOH A 29 429 69 HOH HOH . 
L 7 HOH A 30 430 60 HOH HOH . 
L 7 HOH A 31 431 62 HOH HOH . 
L 7 HOH A 32 432 13 HOH HOH . 
L 7 HOH A 33 433 56 HOH HOH . 
L 7 HOH A 34 434 73 HOH HOH . 
L 7 HOH A 35 435 35 HOH HOH . 
L 7 HOH A 36 436 52 HOH HOH . 
L 7 HOH A 37 437 12 HOH HOH . 
L 7 HOH A 38 438 42 HOH HOH . 
L 7 HOH A 39 439 51 HOH HOH . 
L 7 HOH A 40 440 61 HOH HOH . 
L 7 HOH A 41 441 33 HOH HOH . 
L 7 HOH A 42 442 22 HOH HOH . 
L 7 HOH A 43 443 67 HOH HOH . 
M 7 HOH B 1 401 38 HOH HOH . 
M 7 HOH B 2 402 1 HOH HOH . 
M 7 HOH B 3 403 19 HOH HOH . 
M 7 HOH B 4 404 55 HOH HOH . 
M 7 HOH B 5 405 64 HOH HOH . 
M 7 HOH B 6 406 57 HOH HOH . 
M 7 HOH B 7 407 65 HOH HOH . 
M 7 HOH B 8 408 34 HOH HOH . 
M 7 HOH B 9 409 17 HOH HOH . 
M 7 HOH B 10 410 48 HOH HOH . 
M 7 HOH B 11 411 16 HOH HOH . 
M 7 HOH B 12 412 71 HOH HOH . 
M 7 HOH B 13 413 28 HOH HOH . 
M 7 HOH B 14 414 2 HOH HOH . 
M 7 HOH B 15 415 37 HOH HOH . 
M 7 HOH B 16 416 20 HOH HOH . 
M 7 HOH B 17 417 50 HOH HOH . 
M 7 HOH B 18 418 47 HOH HOH . 
M 7 HOH B 19 419 63 HOH HOH . 
M 7 HOH B 20 420 25 HOH HOH . 
M 7 HOH B 21 421 4 HOH HOH . 
M 7 HOH B 22 422 45 HOH HOH . 
M 7 HOH B 23 423 26 HOH HOH . 
M 7 HOH B 24 424 70 HOH HOH . 
M 7 HOH B 25 425 41 HOH HOH . 
M 7 HOH B 26 426 46 HOH HOH . 
M 7 HOH B 27 428 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C33 WU0 . . . C 2 -2.997 14.264 -2.411 1 36.87 ? C33 WU0 301 A 1 
HETATM 2 C C28 WU0 . . . C 2 -2.88 15.521 -1.807 1 35.34 ? C28 WU0 301 A 1 
HETATM 3 C C10 WU0 . . . C 2 -2.258 15.615 -0.458 1 38.79 ? C10 WU0 301 A 1 
HETATM 4 C C15 WU0 . . . C 2 -1.953 16.842 0.139 1 40.68 ? C15 WU0 301 A 1 
HETATM 5 C C14 WU0 . . . C 2 -1.404 16.894 1.41 1 38.55 ? C14 WU0 301 A 1 
HETATM 6 C C13 WU0 . . . C 2 -1.139 15.733 2.111 1 37.26 ? C13 WU0 301 A 1 
HETATM 7 C C12 WU0 . . . C 2 -1.444 14.511 1.535 1 38.6 ? C12 WU0 301 A 1 
HETATM 8 C C11 WU0 . . . C 2 -2 14.452 0.27 1 38.05 ? C11 WU0 301 A 1 
HETATM 9 C C32 WU0 . . . C 2 -3.594 14.114 -3.645 1 34.97 ? C32 WU0 301 A 1 
HETATM 10 C C22 WU0 . . . C 2 -3.718 12.782 -4.266 1 33.9 ? C22 WU0 301 A 1 
HETATM 11 C C27 WU0 . . . C 2 -2.723 11.831 -4.07 1 32.06 ? C27 WU0 301 A 1 
HETATM 12 C C26 WU0 . . . C 2 -2.844 10.584 -4.701 1 31.53 ? C26 WU0 301 A 1 
HETATM 13 C C25 WU0 . . . C 2 -3.933 10.318 -5.514 1 32.32 ? C25 WU0 301 A 1 
HETATM 14 C C24 WU0 . . . C 2 -4.925 11.283 -5.727 1 31.81 ? C24 WU0 301 A 1 
HETATM 15 C C23 WU0 . . . C 2 -4.826 12.505 -5.097 1 31.77 ? C23 WU0 301 A 1 
HETATM 16 C C31 WU0 . . . C 2 -4.075 15.236 -4.329 1 35.35 ? C31 WU0 301 A 1 
HETATM 17 C C30 WU0 . . . C 2 -3.937 16.489 -3.737 1 37.4 ? C30 WU0 301 A 1 
HETATM 18 C C29 WU0 . . . C 2 -3.338 16.638 -2.49 1 35.1 ? C29 WU0 301 A 1 
HETATM 19 C C3T WU0 . . . C 2 -0.474 15.804 3.439 1 36.46 ? C3T WU0 301 A 1 
HETATM 20 O O2T WU0 . . . C 2 -0.22 16.895 3.927 1 38.67 ? O2T WU0 301 A 1 
HETATM 21 C C3U WU0 . . . C 2 -4.002 9.012 -6.204 1 34.07 ? C3U WU0 301 A 1 
HETATM 22 O O2U WU0 . . . C 2 -2.93 8.51 -6.588 1 35.63 ? O2U WU0 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#