data_8WMK # _model_server_result.job_id 0OLR6CSWDDT30JdMHvk2jA _model_server_result.datetime_utc '2024-11-24 04:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 8WMK # _exptl.entry_id 8WMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.14 _cell.angle_gamma 90 _cell.entry_id 8WMK _cell.length_a 117.715 _cell.length_b 113.841 _cell.length_c 83.206 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -51.386787 0 65.441857 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C3T WU0 . A WU0 301 1_555 D N ETA . A ETA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 C C3U WU0 . A WU0 301 1_555 F N ETA . A ETA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 D O ETA . A ETA 302 1_555 E C1 MAN . A MAN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 F O ETA . A ETA 304 1_555 G C1 MAN . A MAN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 H MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 H MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 H MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 I CA CA . A CA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 H MN MN . A MN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc10 H MN MN . A MN 306 1_555 L O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc11 H MN MN . A MN 306 1_555 L O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc12 I CA CA . A CA 307 1_555 L O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc13 I CA CA . A CA 307 1_555 L O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc14 B OE2 GLU 8 B GLU 8 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc15 B OD2 ASP 10 B ASP 10 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc16 B OD1 ASP 10 B ASP 10 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc17 B OD2 ASP 10 B ASP 10 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc18 B O TYR 12 B TYR 12 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc19 B OD1 ASN 14 B ASN 14 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc20 B OD1 ASP 19 B ASP 19 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc21 B OD2 ASP 19 B ASP 19 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc22 B NE2 HIS 24 B HIS 24 1_555 J MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc23 J MN MN . B MN 301 1_555 M O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc24 J MN MN . B MN 301 1_555 M O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc25 K CA CA . B CA 302 1_555 M O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc26 K CA CA . B CA 302 1_555 M O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8WMK _atom_sites.fract_transf_matrix[1][1] 0.008495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WU0 A 1 301 301 WU0 Man . D 3 ETA A 1 302 301 ETA Man . E 4 MAN A 1 303 301 MAN Man . F 3 ETA A 1 304 301 ETA Man . G 4 MAN A 1 305 301 MAN Man . H 5 MN A 1 306 1 MN MN . I 6 CA A 1 307 1 CA CA . J 5 MN B 1 301 2 MN MN . K 6 CA B 1 302 2 CA CA . L 7 HOH A 1 401 36 HOH HOH . L 7 HOH A 2 402 14 HOH HOH . L 7 HOH A 3 403 40 HOH HOH . L 7 HOH A 4 404 59 HOH HOH . L 7 HOH A 5 405 66 HOH HOH . L 7 HOH A 6 406 44 HOH HOH . L 7 HOH A 7 407 9 HOH HOH . L 7 HOH A 8 408 53 HOH HOH . L 7 HOH A 9 409 7 HOH HOH . L 7 HOH A 10 410 6 HOH HOH . L 7 HOH A 11 411 54 HOH HOH . L 7 HOH A 12 412 18 HOH HOH . L 7 HOH A 13 413 21 HOH HOH . L 7 HOH A 14 414 72 HOH HOH . L 7 HOH A 15 415 23 HOH HOH . L 7 HOH A 16 416 10 HOH HOH . L 7 HOH A 17 417 5 HOH HOH . L 7 HOH A 18 418 31 HOH HOH . L 7 HOH A 19 419 8 HOH HOH . L 7 HOH A 20 420 3 HOH HOH . L 7 HOH A 21 421 39 HOH HOH . L 7 HOH A 22 422 29 HOH HOH . L 7 HOH A 23 423 43 HOH HOH . L 7 HOH A 24 424 11 HOH HOH . L 7 HOH A 25 425 32 HOH HOH . L 7 HOH A 26 426 49 HOH HOH . L 7 HOH A 27 427 27 HOH HOH . L 7 HOH A 28 428 30 HOH HOH . L 7 HOH A 29 429 69 HOH HOH . L 7 HOH A 30 430 60 HOH HOH . L 7 HOH A 31 431 62 HOH HOH . L 7 HOH A 32 432 13 HOH HOH . L 7 HOH A 33 433 56 HOH HOH . L 7 HOH A 34 434 73 HOH HOH . L 7 HOH A 35 435 35 HOH HOH . L 7 HOH A 36 436 52 HOH HOH . L 7 HOH A 37 437 12 HOH HOH . L 7 HOH A 38 438 42 HOH HOH . L 7 HOH A 39 439 51 HOH HOH . L 7 HOH A 40 440 61 HOH HOH . L 7 HOH A 41 441 33 HOH HOH . L 7 HOH A 42 442 22 HOH HOH . L 7 HOH A 43 443 67 HOH HOH . M 7 HOH B 1 401 38 HOH HOH . M 7 HOH B 2 402 1 HOH HOH . M 7 HOH B 3 403 19 HOH HOH . M 7 HOH B 4 404 55 HOH HOH . M 7 HOH B 5 405 64 HOH HOH . M 7 HOH B 6 406 57 HOH HOH . M 7 HOH B 7 407 65 HOH HOH . M 7 HOH B 8 408 34 HOH HOH . M 7 HOH B 9 409 17 HOH HOH . M 7 HOH B 10 410 48 HOH HOH . M 7 HOH B 11 411 16 HOH HOH . M 7 HOH B 12 412 71 HOH HOH . M 7 HOH B 13 413 28 HOH HOH . M 7 HOH B 14 414 2 HOH HOH . M 7 HOH B 15 415 37 HOH HOH . M 7 HOH B 16 416 20 HOH HOH . M 7 HOH B 17 417 50 HOH HOH . M 7 HOH B 18 418 47 HOH HOH . M 7 HOH B 19 419 63 HOH HOH . M 7 HOH B 20 420 25 HOH HOH . M 7 HOH B 21 421 4 HOH HOH . M 7 HOH B 22 422 45 HOH HOH . M 7 HOH B 23 423 26 HOH HOH . M 7 HOH B 24 424 70 HOH HOH . M 7 HOH B 25 425 41 HOH HOH . M 7 HOH B 26 426 46 HOH HOH . M 7 HOH B 27 428 74 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 6 _atom_site.Cartn_x -46.143 _atom_site.Cartn_y 57.163 _atom_site.Cartn_z 9.095 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 480 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #