data_8WMO # _model_server_result.job_id J1oQQxOn9H62TfA3pLw6vA _model_server_result.datetime_utc '2024-11-01 20:39:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":503}' # _entry.id 8WMO # _exptl.entry_id 8WMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WMO _cell.length_a 103.82 _cell.length_b 156.446 _cell.length_c 179.393 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc2 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc5 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc6 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc7 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc8 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc10 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc11 P O1G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc12 P O1B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc13 W O1A GTP . D GTP 501 1_555 X MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 373 n n O1 C6 MES sing 374 n n C2 C3 MES sing 375 n n C2 H21 MES sing 376 n n C2 H22 MES sing 377 n n C3 N4 MES sing 378 n n C3 H31 MES sing 379 n n C3 H32 MES sing 380 n n N4 C5 MES sing 381 n n N4 C7 MES sing 382 n n N4 HN4 MES sing 383 n n C5 C6 MES sing 384 n n C5 H51 MES sing 385 n n C5 H52 MES sing 386 n n C6 H61 MES sing 387 n n C6 H62 MES sing 388 n n C7 C8 MES sing 389 n n C7 H71 MES sing 390 n n C7 H72 MES sing 391 n n C8 S MES sing 392 n n C8 H81 MES sing 393 n n C8 H82 MES sing 394 n n S O1S MES doub 395 n n S O2S MES doub 396 n n S O3S MES sing 397 n n # _atom_sites.entry_id 8WMO _atom_sites.fract_transf_matrix[1][1] 0.009632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 EDO A 1 503 505 EDO EDO . J 8 PEG A 1 504 506 PEG PEG . K 9 GDP B 1 501 501 GDP GDP . L 6 MG B 1 502 502 MG MG . M 10 MES B 1 503 503 MES MES . N 11 WIW B 1 504 504 WIW B1N . O 7 EDO B 1 505 505 EDO EDO . P 5 GTP C 1 501 501 GTP GTP . Q 6 MG C 1 502 502 MG MG . R 12 CA C 1 503 503 CA CA . S 7 EDO C 1 504 504 EDO EDO . T 7 EDO C 1 505 505 EDO EDO . U 7 EDO C 1 506 506 EDO EDO . V 7 EDO C 1 507 507 EDO EDO . W 5 GTP D 1 501 501 GTP GTP . X 6 MG D 1 502 502 MG MG . Y 7 EDO D 1 503 503 EDO EDO . Z 7 EDO D 1 504 504 EDO EDO . AA 13 ACP F 1 401 401 ACP ACP . BA 14 HOH A 1 601 31 HOH HOH . BA 14 HOH A 2 602 30 HOH HOH . BA 14 HOH A 3 603 17 HOH HOH . BA 14 HOH A 4 604 11 HOH HOH . BA 14 HOH A 5 605 26 HOH HOH . BA 14 HOH A 6 606 27 HOH HOH . BA 14 HOH A 7 607 29 HOH HOH . CA 14 HOH B 1 601 18 HOH HOH . CA 14 HOH B 2 602 5 HOH HOH . CA 14 HOH B 3 603 1 HOH HOH . CA 14 HOH B 4 604 28 HOH HOH . CA 14 HOH B 5 605 25 HOH HOH . CA 14 HOH B 6 606 2 HOH HOH . DA 14 HOH C 1 601 12 HOH HOH . DA 14 HOH C 2 602 3 HOH HOH . DA 14 HOH C 3 603 4 HOH HOH . DA 14 HOH C 4 604 6 HOH HOH . DA 14 HOH C 5 605 24 HOH HOH . DA 14 HOH C 6 606 7 HOH HOH . EA 14 HOH D 1 601 9 HOH HOH . EA 14 HOH D 2 602 13 HOH HOH . EA 14 HOH D 3 603 22 HOH HOH . EA 14 HOH D 4 604 23 HOH HOH . EA 14 HOH D 5 605 10 HOH HOH . EA 14 HOH D 6 606 21 HOH HOH . EA 14 HOH D 7 607 16 HOH HOH . EA 14 HOH D 8 608 14 HOH HOH . EA 14 HOH D 9 609 8 HOH HOH . FA 14 HOH F 1 501 19 HOH HOH . FA 14 HOH F 2 502 15 HOH HOH . FA 14 HOH F 3 503 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . M 10 -30.846 56.42 -33.196 1 64.79 ? O1 MES 503 B 1 HETATM 2 C C2 MES . . . M 10 -31.398 55.61 -34.223 1 59.18 ? C2 MES 503 B 1 HETATM 3 C C3 MES . . . M 10 -31.638 56.398 -35.492 1 58 ? C3 MES 503 B 1 HETATM 4 N N4 MES . . . M 10 -32.124 57.746 -35.187 1 69.44 ? N4 MES 503 B 1 HETATM 5 C C5 MES . . . M 10 -31.709 58.479 -33.993 1 69.82 ? C5 MES 503 B 1 HETATM 6 C C6 MES . . . M 10 -31.669 57.507 -32.835 1 60.83 ? C6 MES 503 B 1 HETATM 7 C C7 MES . . . M 10 -32.37 58.561 -36.37 1 74.29 ? C7 MES 503 B 1 HETATM 8 C C8 MES . . . M 10 -32.098 60.018 -35.995 1 69.08 ? C8 MES 503 B 1 HETATM 9 S S MES . . . M 10 -32.861 60.996 -37.099 1 78.9 ? S MES 503 B 1 HETATM 10 O O1S MES . . . M 10 -34.327 60.96 -36.893 1 75.15 ? O1S MES 503 B 1 HETATM 11 O O2S MES . . . M 10 -32.396 62.404 -36.993 1 68.46 ? O2S MES 503 B 1 HETATM 12 O O3S MES . . . M 10 -32.543 60.452 -38.441 1 71.67 ? O3S MES 503 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #