data_8WN6 # _model_server_result.job_id 2aLfbWk5aSWF9lrBCIp5Dw _model_server_result.datetime_utc '2025-01-16 13:37:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 8WN6 # _exptl.entry_id 8WN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WN6 _cell.length_a 67.542 _cell.length_b 68.978 _cell.length_c 96.389 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 C 1 BGC C 1 BGC 2 n B BGC 2 C 2 BGC C 2 BGC 2 n C BGC 1 B 1 BGC B 1 BGC 2 n C BGC 2 B 2 BGC B 2 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O2 BGC . C BGC 1 1_555 B C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale2 C O2 BGC . B BGC 1 1_555 C C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? metalc ? metalc1 A O HIS 341 A HIS 321 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc2 E NA NA . A NA 502 1_555 H O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc3 E NA NA . A NA 502 1_555 H O HOH . A HOH 742 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc4 E NA NA . A NA 502 1_555 H O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc5 E NA NA . A NA 502 1_555 H O HOH . A HOH 806 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8WN6 _atom_sites.fract_transf_matrix[1][1] 0.014806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NHE A 1 501 1 NHE NHE . E 4 NA A 1 502 3 NA NA . F 5 MLA A 1 503 10 MLA MLA . G 5 MLA A 1 504 11 MLA MLA . H 6 HOH A 1 601 94 HOH HOH . H 6 HOH A 2 602 133 HOH HOH . H 6 HOH A 3 603 106 HOH HOH . H 6 HOH A 4 604 189 HOH HOH . H 6 HOH A 5 605 250 HOH HOH . H 6 HOH A 6 606 194 HOH HOH . H 6 HOH A 7 607 104 HOH HOH . H 6 HOH A 8 608 205 HOH HOH . H 6 HOH A 9 609 34 HOH HOH . H 6 HOH A 10 610 243 HOH HOH . H 6 HOH A 11 611 72 HOH HOH . H 6 HOH A 12 612 46 HOH HOH . H 6 HOH A 13 613 44 HOH HOH . H 6 HOH A 14 614 53 HOH HOH . H 6 HOH A 15 615 208 HOH HOH . H 6 HOH A 16 616 172 HOH HOH . H 6 HOH A 17 617 210 HOH HOH . H 6 HOH A 18 618 193 HOH HOH . H 6 HOH A 19 619 137 HOH HOH . H 6 HOH A 20 620 241 HOH HOH . H 6 HOH A 21 621 162 HOH HOH . H 6 HOH A 22 622 235 HOH HOH . H 6 HOH A 23 623 32 HOH HOH . H 6 HOH A 24 624 28 HOH HOH . H 6 HOH A 25 625 183 HOH HOH . H 6 HOH A 26 626 213 HOH HOH . H 6 HOH A 27 627 134 HOH HOH . H 6 HOH A 28 628 198 HOH HOH . H 6 HOH A 29 629 109 HOH HOH . H 6 HOH A 30 630 153 HOH HOH . H 6 HOH A 31 631 211 HOH HOH . H 6 HOH A 32 632 140 HOH HOH . H 6 HOH A 33 633 76 HOH HOH . H 6 HOH A 34 634 221 HOH HOH . H 6 HOH A 35 635 5 HOH HOH . H 6 HOH A 36 636 18 HOH HOH . H 6 HOH A 37 637 242 HOH HOH . H 6 HOH A 38 638 13 HOH HOH . H 6 HOH A 39 639 47 HOH HOH . H 6 HOH A 40 640 168 HOH HOH . H 6 HOH A 41 641 82 HOH HOH . H 6 HOH A 42 642 73 HOH HOH . H 6 HOH A 43 643 248 HOH HOH . H 6 HOH A 44 644 152 HOH HOH . H 6 HOH A 45 645 234 HOH HOH . H 6 HOH A 46 646 16 HOH HOH . H 6 HOH A 47 647 74 HOH HOH . H 6 HOH A 48 648 63 HOH HOH . H 6 HOH A 49 649 111 HOH HOH . H 6 HOH A 50 650 77 HOH HOH . H 6 HOH A 51 651 107 HOH HOH . H 6 HOH A 52 652 181 HOH HOH . H 6 HOH A 53 653 136 HOH HOH . H 6 HOH A 54 654 90 HOH HOH . H 6 HOH A 55 655 29 HOH HOH . H 6 HOH A 56 656 238 HOH HOH . H 6 HOH A 57 657 80 HOH HOH . H 6 HOH A 58 658 130 HOH HOH . H 6 HOH A 59 659 61 HOH HOH . H 6 HOH A 60 660 244 HOH HOH . H 6 HOH A 61 661 25 HOH HOH . H 6 HOH A 62 662 184 HOH HOH . H 6 HOH A 63 663 24 HOH HOH . H 6 HOH A 64 664 200 HOH HOH . H 6 HOH A 65 665 110 HOH HOH . H 6 HOH A 66 666 186 HOH HOH . H 6 HOH A 67 667 67 HOH HOH . H 6 HOH A 68 668 132 HOH HOH . H 6 HOH A 69 669 86 HOH HOH . H 6 HOH A 70 670 245 HOH HOH . H 6 HOH A 71 671 93 HOH HOH . H 6 HOH A 72 672 92 HOH HOH . H 6 HOH A 73 673 192 HOH HOH . H 6 HOH A 74 674 42 HOH HOH . H 6 HOH A 75 675 8 HOH HOH . H 6 HOH A 76 676 223 HOH HOH . H 6 HOH A 77 677 139 HOH HOH . H 6 HOH A 78 678 37 HOH HOH . H 6 HOH A 79 679 252 HOH HOH . H 6 HOH A 80 680 52 HOH HOH . H 6 HOH A 81 681 48 HOH HOH . H 6 HOH A 82 682 36 HOH HOH . H 6 HOH A 83 683 116 HOH HOH . H 6 HOH A 84 684 102 HOH HOH . H 6 HOH A 85 685 145 HOH HOH . H 6 HOH A 86 686 196 HOH HOH . H 6 HOH A 87 687 51 HOH HOH . H 6 HOH A 88 688 113 HOH HOH . H 6 HOH A 89 689 33 HOH HOH . H 6 HOH A 90 690 128 HOH HOH . H 6 HOH A 91 691 126 HOH HOH . H 6 HOH A 92 692 166 HOH HOH . H 6 HOH A 93 693 173 HOH HOH . H 6 HOH A 94 694 27 HOH HOH . H 6 HOH A 95 695 40 HOH HOH . H 6 HOH A 96 696 21 HOH HOH . H 6 HOH A 97 697 97 HOH HOH . H 6 HOH A 98 698 39 HOH HOH . H 6 HOH A 99 699 12 HOH HOH . H 6 HOH A 100 700 4 HOH HOH . H 6 HOH A 101 701 83 HOH HOH . H 6 HOH A 102 702 91 HOH HOH . H 6 HOH A 103 703 149 HOH HOH . H 6 HOH A 104 704 105 HOH HOH . H 6 HOH A 105 705 69 HOH HOH . H 6 HOH A 106 706 165 HOH HOH . H 6 HOH A 107 707 55 HOH HOH . H 6 HOH A 108 708 1 HOH HOH . H 6 HOH A 109 709 108 HOH HOH . H 6 HOH A 110 710 50 HOH HOH . H 6 HOH A 111 711 151 HOH HOH . H 6 HOH A 112 712 123 HOH HOH . H 6 HOH A 113 713 121 HOH HOH . H 6 HOH A 114 714 9 HOH HOH . H 6 HOH A 115 715 23 HOH HOH . H 6 HOH A 116 716 190 HOH HOH . H 6 HOH A 117 717 219 HOH HOH . H 6 HOH A 118 718 96 HOH HOH . H 6 HOH A 119 719 232 HOH HOH . H 6 HOH A 120 720 89 HOH HOH . H 6 HOH A 121 721 147 HOH HOH . H 6 HOH A 122 722 3 HOH HOH . H 6 HOH A 123 723 22 HOH HOH . H 6 HOH A 124 724 11 HOH HOH . H 6 HOH A 125 725 201 HOH HOH . H 6 HOH A 126 726 144 HOH HOH . H 6 HOH A 127 727 160 HOH HOH . H 6 HOH A 128 728 10 HOH HOH . H 6 HOH A 129 729 85 HOH HOH . H 6 HOH A 130 730 38 HOH HOH . H 6 HOH A 131 731 15 HOH HOH . H 6 HOH A 132 732 103 HOH HOH . H 6 HOH A 133 733 202 HOH HOH . H 6 HOH A 134 734 178 HOH HOH . H 6 HOH A 135 735 216 HOH HOH . H 6 HOH A 136 736 122 HOH HOH . H 6 HOH A 137 737 70 HOH HOH . H 6 HOH A 138 738 117 HOH HOH . H 6 HOH A 139 739 66 HOH HOH . H 6 HOH A 140 740 62 HOH HOH . H 6 HOH A 141 741 20 HOH HOH . H 6 HOH A 142 742 88 HOH HOH . H 6 HOH A 143 743 156 HOH HOH . H 6 HOH A 144 744 19 HOH HOH . H 6 HOH A 145 745 56 HOH HOH . H 6 HOH A 146 746 226 HOH HOH . H 6 HOH A 147 747 101 HOH HOH . H 6 HOH A 148 748 225 HOH HOH . H 6 HOH A 149 749 57 HOH HOH . H 6 HOH A 150 750 79 HOH HOH . H 6 HOH A 151 751 119 HOH HOH . H 6 HOH A 152 752 45 HOH HOH . H 6 HOH A 153 753 240 HOH HOH . H 6 HOH A 154 754 87 HOH HOH . H 6 HOH A 155 755 174 HOH HOH . H 6 HOH A 156 756 84 HOH HOH . H 6 HOH A 157 757 2 HOH HOH . H 6 HOH A 158 758 203 HOH HOH . H 6 HOH A 159 759 17 HOH HOH . H 6 HOH A 160 760 141 HOH HOH . H 6 HOH A 161 761 81 HOH HOH . H 6 HOH A 162 762 14 HOH HOH . H 6 HOH A 163 763 7 HOH HOH . H 6 HOH A 164 764 129 HOH HOH . H 6 HOH A 165 765 115 HOH HOH . H 6 HOH A 166 766 60 HOH HOH . H 6 HOH A 167 767 43 HOH HOH . H 6 HOH A 168 768 191 HOH HOH . H 6 HOH A 169 769 59 HOH HOH . H 6 HOH A 170 770 220 HOH HOH . H 6 HOH A 171 771 199 HOH HOH . H 6 HOH A 172 772 155 HOH HOH . H 6 HOH A 173 773 247 HOH HOH . H 6 HOH A 174 774 251 HOH HOH . H 6 HOH A 175 775 135 HOH HOH . H 6 HOH A 176 776 68 HOH HOH . H 6 HOH A 177 777 228 HOH HOH . H 6 HOH A 178 778 143 HOH HOH . H 6 HOH A 179 779 185 HOH HOH . H 6 HOH A 180 780 98 HOH HOH . H 6 HOH A 181 781 65 HOH HOH . H 6 HOH A 182 782 131 HOH HOH . H 6 HOH A 183 783 229 HOH HOH . H 6 HOH A 184 784 154 HOH HOH . H 6 HOH A 185 785 100 HOH HOH . H 6 HOH A 186 786 95 HOH HOH . H 6 HOH A 187 787 49 HOH HOH . H 6 HOH A 188 788 35 HOH HOH . H 6 HOH A 189 789 170 HOH HOH . H 6 HOH A 190 790 58 HOH HOH . H 6 HOH A 191 791 175 HOH HOH . H 6 HOH A 192 792 158 HOH HOH . H 6 HOH A 193 793 148 HOH HOH . H 6 HOH A 194 794 179 HOH HOH . H 6 HOH A 195 795 78 HOH HOH . H 6 HOH A 196 796 161 HOH HOH . H 6 HOH A 197 797 217 HOH HOH . H 6 HOH A 198 798 176 HOH HOH . H 6 HOH A 199 799 125 HOH HOH . H 6 HOH A 200 800 207 HOH HOH . H 6 HOH A 201 801 212 HOH HOH . H 6 HOH A 202 802 112 HOH HOH . H 6 HOH A 203 803 253 HOH HOH . H 6 HOH A 204 804 206 HOH HOH . H 6 HOH A 205 805 64 HOH HOH . H 6 HOH A 206 806 146 HOH HOH . H 6 HOH A 207 807 224 HOH HOH . H 6 HOH A 208 808 177 HOH HOH . H 6 HOH A 209 809 227 HOH HOH . H 6 HOH A 210 810 215 HOH HOH . H 6 HOH A 211 811 239 HOH HOH . H 6 HOH A 212 812 138 HOH HOH . H 6 HOH A 213 813 204 HOH HOH . H 6 HOH A 214 814 99 HOH HOH . H 6 HOH A 215 815 195 HOH HOH . H 6 HOH A 216 816 54 HOH HOH . H 6 HOH A 217 817 75 HOH HOH . H 6 HOH A 218 818 127 HOH HOH . H 6 HOH A 219 819 159 HOH HOH . H 6 HOH A 220 820 169 HOH HOH . H 6 HOH A 221 821 214 HOH HOH . H 6 HOH A 222 822 120 HOH HOH . H 6 HOH A 223 823 236 HOH HOH . H 6 HOH A 224 824 124 HOH HOH . H 6 HOH A 225 825 249 HOH HOH . H 6 HOH A 226 826 197 HOH HOH . H 6 HOH A 227 827 142 HOH HOH . H 6 HOH A 228 828 114 HOH HOH . H 6 HOH A 229 829 231 HOH HOH . H 6 HOH A 230 830 188 HOH HOH . H 6 HOH A 231 831 218 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 2.484 _atom_site.Cartn_y -24.267 _atom_site.Cartn_z 4.19 _atom_site.occupancy 0 _atom_site.B_iso_or_equiv 21.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 478 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #