data_8WN8 # _model_server_result.job_id 3z-Q3eu5XoTYxGkolLGphQ _model_server_result.datetime_utc '2025-01-05 16:18:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8WN8 # _exptl.entry_id 8WN8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WN8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 B CYS 4 1_555 B SG CYS 4 C CYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 55 B CYS 55 1_555 A SG CYS 143 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 179 B CYS 179 1_555 A SG CYS 223 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 280 B CYS 280 1_555 A SG CYS 329 B CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 291 B CYS 291 1_555 A SG CYS 312 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 313 B CYS 313 1_555 A SG CYS 316 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 4 C CYS 4 1_555 B SG CYS 15 C CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 B SG CYS 55 C CYS 55 1_555 B SG CYS 143 C CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 179 C CYS 179 1_555 B SG CYS 223 C CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 280 C CYS 280 1_555 B SG CYS 329 C CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 B SG CYS 291 C CYS 291 1_555 B SG CYS 312 C CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 B SG CYS 313 C CYS 313 1_555 B SG CYS 316 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 C SG CYS 4 D CYS 4 1_555 C SG CYS 15 D CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf14 C SG CYS 4 D CYS 4 1_555 D SG CYS 4 E CYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf15 C SG CYS 55 D CYS 55 1_555 C SG CYS 143 D CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 C SG CYS 179 D CYS 179 1_555 C SG CYS 223 D CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 C SG CYS 280 D CYS 280 1_555 C SG CYS 329 D CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 C SG CYS 291 D CYS 291 1_555 C SG CYS 312 D CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 C SG CYS 313 D CYS 313 1_555 C SG CYS 316 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 D SG CYS 55 E CYS 55 1_555 D SG CYS 143 E CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 D SG CYS 179 E CYS 179 1_555 D SG CYS 223 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 D SG CYS 280 E CYS 280 1_555 D SG CYS 329 E CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf23 D SG CYS 291 E CYS 291 1_555 D SG CYS 312 E CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 D SG CYS 313 E CYS 313 1_555 D SG CYS 316 E CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 207 B ASN 207 1_555 E C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B ND2 ASN 207 C ASN 207 1_555 F C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8WN8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG B 1 401 401 NAG NAG . F 2 NAG C 1 401 401 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 2 87.538 111.692 88.392 1 80.65 ? C1 NAG 401 C 1 HETATM 2 C C2 NAG . . . F 2 86.226 112.06 87.677 1 83.96 ? C2 NAG 401 C 1 HETATM 3 C C3 NAG . . . F 2 85.068 111.284 88.301 1 86.7 ? C3 NAG 401 C 1 HETATM 4 C C4 NAG . . . F 2 85.372 109.791 88.279 1 90.56 ? C4 NAG 401 C 1 HETATM 5 C C5 NAG . . . F 2 86.684 109.557 89.028 1 91.81 ? C5 NAG 401 C 1 HETATM 6 C C6 NAG . . . F 2 87.139 108.116 89.079 1 91.57 ? C6 NAG 401 C 1 HETATM 7 C C7 NAG . . . F 2 85.722 114.184 88.831 1 82.52 ? C7 NAG 401 C 1 HETATM 8 C C8 NAG . . . F 2 85.492 115.657 88.605 1 77.33 ? C8 NAG 401 C 1 HETATM 9 N N2 NAG . . . F 2 85.976 113.476 87.717 1 82.16 ? N2 NAG 401 C 1 HETATM 10 O O3 NAG . . . F 2 83.902 111.594 87.585 1 84.56 ? O3 NAG 401 C 1 HETATM 11 O O4 NAG . . . F 2 84.294 109.124 88.891 1 88.12 ? O4 NAG 401 C 1 HETATM 12 O O5 NAG . . . F 2 87.695 110.293 88.385 1 83.72 ? O5 NAG 401 C 1 HETATM 13 O O6 NAG . . . F 2 88.527 108.071 89.316 1 89.22 ? O6 NAG 401 C 1 HETATM 14 O O7 NAG . . . F 2 85.68 113.694 89.95 1 85.16 ? O7 NAG 401 C 1 HETATM 15 H H1 NAG . . . F 2 87.493 112 89.31 1 80.87 ? H1 NAG 401 C 1 HETATM 16 H H2 NAG . . . F 2 86.287 111.797 86.749 1 81.33 ? H2 NAG 401 C 1 HETATM 17 H H3 NAG . . . F 2 84.985 111.548 89.229 1 85.12 ? H3 NAG 401 C 1 HETATM 18 H H4 NAG . . . F 2 85.48 109.516 87.355 1 87.4 ? H4 NAG 401 C 1 HETATM 19 H H5 NAG . . . F 2 86.578 109.853 89.946 1 88.18 ? H5 NAG 401 C 1 HETATM 20 H H61 NAG . . . F 2 86.902 107.689 88.24 1 88.67 ? H61 NAG 401 C 1 HETATM 21 H H62 NAG . . . F 2 86.633 107.664 89.772 1 90.5 ? H62 NAG 401 C 1 HETATM 22 H H81 NAG . . . F 2 84.636 115.783 88.166 1 79.44 ? H81 NAG 401 C 1 HETATM 23 H H82 NAG . . . F 2 86.175 115.999 88.008 1 76.05 ? H82 NAG 401 C 1 HETATM 24 H H83 NAG . . . F 2 85.5 116.186 89.418 1 77.73 ? H83 NAG 401 C 1 HETATM 25 H HN2 NAG . . . F 2 85.988 113.894 86.965 1 79.69 ? HN2 NAG 401 C 1 HETATM 26 H HO3 NAG . . . F 2 83.644 112.366 87.83 1 84.83 ? HO3 NAG 401 C 1 HETATM 27 H HO4 NAG . . . F 2 83.735 108.897 88.293 1 87.16 ? HO4 NAG 401 C 1 HETATM 28 H HO6 NAG . . . F 2 88.919 108.48 88.682 1 82.69 ? HO6 NAG 401 C 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #