data_8WOQ # _model_server_result.job_id 6QhCgSlUBBSMVVPGwp-kbw _model_server_result.datetime_utc '2025-03-01 10:37:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8woq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":903}' # _entry.id 8WOQ # _exptl.entry_id 8WOQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WOQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WOQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 V N N ? 5 W N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1101 NAG 2 n C NAG 2 C 2 NAG A 1109 NAG 2 n D NAG 1 D 1 NAG A 1103 NAG 2 n D NAG 2 D 2 NAG A 1108 NAG 2 n E NAG 1 E 1 NAG B 1101 NAG 2 n E NAG 2 E 2 NAG B 1109 NAG 2 n F NAG 1 F 1 NAG B 1103 NAG 2 n F NAG 2 F 2 NAG B 1108 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 130 1_555 A SG CYS 222 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 212 A CYS 212 1_555 A SG CYS 271 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 479 A CYS 479 1_555 A SG CYS 565 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 485 A CYS 485 1_555 A SG CYS 787 A CYS 787 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 130 B CYS 130 1_555 B SG CYS 222 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 212 B CYS 212 1_555 B SG CYS 271 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 479 B CYS 479 1_555 B SG CYS 565 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 485 B CYS 485 1_555 B SG CYS 787 B CYS 787 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 67 A ASN 67 1_555 I C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 83 A ASN 83 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 A ND2 ASN 136 A ASN 136 1_555 J C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B ND2 ASN 57 B ASN 57 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 B ND2 ASN 67 B ASN 67 1_555 V C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 83 B ASN 83 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 B ND2 ASN 136 B ASN 136 1_555 W C1 NAG . B NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OD1 ASN 219 A ASN 219 1_555 H CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc2 A O MET 221 A MET 221 1_555 H CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc3 A O PRO 223 A PRO 223 1_555 H CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc4 A NE2 HIS 563 A HIS 563 1_555 G ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 A NE2 HIS 796 A HIS 796 1_555 G ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 A NE2 HIS 800 A HIS 800 1_555 G ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc7 G ZN ZN . A ZN 901 1_555 HA O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 B OD1 ASN 219 B ASN 219 1_555 U CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc9 B O MET 221 B MET 221 1_555 U CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc10 B O PRO 223 B PRO 223 1_555 U CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc11 B NE2 HIS 563 B HIS 563 1_555 T ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc12 B NE2 HIS 796 B HIS 796 1_555 T ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 B NE2 HIS 800 B HIS 800 1_555 T ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc14 T ZN ZN . B ZN 901 1_555 IA O HOH . B HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 314 n n C1 O1 NAG sing 315 n n C1 O5 NAG sing 316 n n C1 H1 NAG sing 317 n n C2 C3 NAG sing 318 n n C2 N2 NAG sing 319 n n C2 H2 NAG sing 320 n n C3 C4 NAG sing 321 n n C3 O3 NAG sing 322 n n C3 H3 NAG sing 323 n n C4 C5 NAG sing 324 n n C4 O4 NAG sing 325 n n C4 H4 NAG sing 326 n n C5 C6 NAG sing 327 n n C5 O5 NAG sing 328 n n C5 H5 NAG sing 329 n n C6 O6 NAG sing 330 n n C6 H61 NAG sing 331 n n C6 H62 NAG sing 332 n n C7 C8 NAG sing 333 n n C7 N2 NAG sing 334 n n C7 O7 NAG doub 335 n n C8 H81 NAG sing 336 n n C8 H82 NAG sing 337 n n C8 H83 NAG sing 338 n n N2 HN2 NAG sing 339 n n O1 HO1 NAG sing 340 n n O3 HO3 NAG sing 341 n n O4 HO4 NAG sing 342 n n O6 HO6 NAG sing 343 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8WOQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ZN A 1 901 1000 ZN ZN . H 4 CA A 1 902 1002 CA CA . I 5 NAG A 1 903 1102 NAG NAG . J 5 NAG A 1 904 1104 NAG NAG . K 6 CLR A 1 905 1 CLR CLR . L 6 CLR A 1 906 2 CLR CLR . M 6 CLR A 1 907 3 CLR CLR . N 6 CLR A 1 908 4 CLR CLR . O 6 CLR A 1 909 5 CLR CLR . P 6 CLR A 1 910 6 CLR CLR . Q 6 CLR A 1 911 7 CLR CLR . R 7 OLA A 1 912 8 OLA OLA . S 8 SPL A 1 913 1106 SPL SPL . T 3 ZN B 1 901 1000 ZN ZN . U 4 CA B 1 902 1002 CA CA . V 5 NAG B 1 903 1102 NAG NAG . W 5 NAG B 1 904 1104 NAG NAG . X 6 CLR B 1 905 1110 CLR CLR . Y 8 SPL B 1 906 1107 SPL SPL . Z 6 CLR B 1 907 1 CLR CLR . AA 6 CLR B 1 908 2 CLR CLR . BA 6 CLR B 1 909 3 CLR CLR . CA 6 CLR B 1 910 4 CLR CLR . DA 6 CLR B 1 911 5 CLR CLR . EA 6 CLR B 1 912 6 CLR CLR . FA 6 CLR B 1 913 7 CLR CLR . GA 7 OLA B 1 914 8 OLA OLA . HA 9 HOH A 1 1001 4 HOH HOH . HA 9 HOH A 2 1002 2 HOH HOH . IA 9 HOH B 1 1001 8 HOH HOH . IA 9 HOH B 2 1002 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 5 162.478 171.083 218.481 1 174.16 ? C1 NAG 903 B 1 HETATM 2 C C2 NAG . . . V 5 161.498 170.983 219.649 1 175.65 ? C2 NAG 903 B 1 HETATM 3 C C3 NAG . . . V 5 161.067 172.376 220.098 1 176.44 ? C3 NAG 903 B 1 HETATM 4 C C4 NAG . . . V 5 162.286 173.235 220.406 1 176.99 ? C4 NAG 903 B 1 HETATM 5 C C5 NAG . . . V 5 163.233 173.249 219.21 1 175.8 ? C5 NAG 903 B 1 HETATM 6 C C6 NAG . . . V 5 164.523 173.985 219.487 1 175.94 ? C6 NAG 903 B 1 HETATM 7 C C7 NAG . . . V 5 159.862 169.204 220.071 1 173.54 ? C7 NAG 903 B 1 HETATM 8 C C8 NAG . . . V 5 158.659 168.478 219.549 1 172.67 ? C8 NAG 903 B 1 HETATM 9 N N2 NAG . . . V 5 160.339 170.181 219.293 1 174.32 ? N2 NAG 903 B 1 HETATM 10 O O3 NAG . . . V 5 160.246 172.266 221.255 1 175.34 ? O3 NAG 903 B 1 HETATM 11 O O4 NAG . . . V 5 161.881 174.567 220.699 1 175.72 ? O4 NAG 903 B 1 HETATM 12 O O5 NAG . . . V 5 163.592 171.906 218.854 1 175.25 ? O5 NAG 903 B 1 HETATM 13 O O6 NAG . . . V 5 164.827 173.995 220.875 1 175.23 ? O6 NAG 903 B 1 HETATM 14 O O7 NAG . . . V 5 160.377 168.92 221.147 1 173.06 ? O7 NAG 903 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #