data_8WOV # _model_server_result.job_id oBhvUvNWsYwQnEear18ScQ _model_server_result.datetime_utc '2024-11-22 19:00:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 8WOV # _exptl.entry_id 8WOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WOV _cell.length_a 101.49 _cell.length_b 109.243 _cell.length_c 130.627 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 8WOV _atom_sites.fract_transf_matrix[1][1] 0.009853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD B 1 401 401 NAD NAD . D 3 UDP B 1 402 402 UDP UDP . E 3 UDP A 1 401 401 UDP UDP . F 2 NAD A 1 402 402 NAD NAD . G 4 HOH B 1 501 66 HOH HOH . G 4 HOH B 2 502 53 HOH HOH . G 4 HOH B 3 503 18 HOH HOH . G 4 HOH B 4 504 95 HOH HOH . G 4 HOH B 5 505 59 HOH HOH . G 4 HOH B 6 506 11 HOH HOH . G 4 HOH B 7 507 34 HOH HOH . G 4 HOH B 8 508 42 HOH HOH . G 4 HOH B 9 509 81 HOH HOH . G 4 HOH B 10 510 102 HOH HOH . G 4 HOH B 11 511 64 HOH HOH . G 4 HOH B 12 512 8 HOH HOH . G 4 HOH B 13 513 91 HOH HOH . G 4 HOH B 14 514 65 HOH HOH . G 4 HOH B 15 515 84 HOH HOH . G 4 HOH B 16 516 27 HOH HOH . G 4 HOH B 17 517 12 HOH HOH . G 4 HOH B 18 518 51 HOH HOH . G 4 HOH B 19 519 80 HOH HOH . G 4 HOH B 20 520 15 HOH HOH . G 4 HOH B 21 521 69 HOH HOH . G 4 HOH B 22 522 75 HOH HOH . G 4 HOH B 23 523 90 HOH HOH . G 4 HOH B 24 524 56 HOH HOH . G 4 HOH B 25 525 77 HOH HOH . G 4 HOH B 26 526 57 HOH HOH . G 4 HOH B 27 527 79 HOH HOH . G 4 HOH B 28 528 33 HOH HOH . G 4 HOH B 29 529 97 HOH HOH . G 4 HOH B 30 530 20 HOH HOH . G 4 HOH B 31 531 13 HOH HOH . G 4 HOH B 32 532 37 HOH HOH . G 4 HOH B 33 533 21 HOH HOH . G 4 HOH B 34 534 23 HOH HOH . G 4 HOH B 35 535 29 HOH HOH . G 4 HOH B 36 536 48 HOH HOH . G 4 HOH B 37 537 9 HOH HOH . G 4 HOH B 38 538 104 HOH HOH . G 4 HOH B 39 539 105 HOH HOH . G 4 HOH B 40 540 107 HOH HOH . G 4 HOH B 41 541 30 HOH HOH . G 4 HOH B 42 542 47 HOH HOH . G 4 HOH B 43 543 85 HOH HOH . G 4 HOH B 44 544 70 HOH HOH . G 4 HOH B 45 545 44 HOH HOH . G 4 HOH B 46 546 4 HOH HOH . G 4 HOH B 47 547 46 HOH HOH . G 4 HOH B 48 548 88 HOH HOH . H 4 HOH A 1 501 2 HOH HOH . H 4 HOH A 2 502 62 HOH HOH . H 4 HOH A 3 503 38 HOH HOH . H 4 HOH A 4 504 98 HOH HOH . H 4 HOH A 5 505 49 HOH HOH . H 4 HOH A 6 506 31 HOH HOH . H 4 HOH A 7 507 39 HOH HOH . H 4 HOH A 8 508 72 HOH HOH . H 4 HOH A 9 509 43 HOH HOH . H 4 HOH A 10 510 61 HOH HOH . H 4 HOH A 11 511 55 HOH HOH . H 4 HOH A 12 512 14 HOH HOH . H 4 HOH A 13 513 100 HOH HOH . H 4 HOH A 14 514 58 HOH HOH . H 4 HOH A 15 515 78 HOH HOH . H 4 HOH A 16 516 32 HOH HOH . H 4 HOH A 17 517 25 HOH HOH . H 4 HOH A 18 518 35 HOH HOH . H 4 HOH A 19 519 103 HOH HOH . H 4 HOH A 20 520 52 HOH HOH . H 4 HOH A 21 521 74 HOH HOH . H 4 HOH A 22 522 89 HOH HOH . H 4 HOH A 23 523 50 HOH HOH . H 4 HOH A 24 524 5 HOH HOH . H 4 HOH A 25 525 82 HOH HOH . H 4 HOH A 26 526 71 HOH HOH . H 4 HOH A 27 527 6 HOH HOH . H 4 HOH A 28 528 22 HOH HOH . H 4 HOH A 29 529 67 HOH HOH . H 4 HOH A 30 530 93 HOH HOH . H 4 HOH A 31 531 16 HOH HOH . H 4 HOH A 32 532 24 HOH HOH . H 4 HOH A 33 533 40 HOH HOH . H 4 HOH A 34 534 10 HOH HOH . H 4 HOH A 35 535 63 HOH HOH . H 4 HOH A 36 536 28 HOH HOH . H 4 HOH A 37 537 108 HOH HOH . H 4 HOH A 38 538 41 HOH HOH . H 4 HOH A 39 539 99 HOH HOH . H 4 HOH A 40 540 109 HOH HOH . H 4 HOH A 41 541 76 HOH HOH . H 4 HOH A 42 542 86 HOH HOH . H 4 HOH A 43 543 60 HOH HOH . H 4 HOH A 44 544 87 HOH HOH . H 4 HOH A 45 545 101 HOH HOH . H 4 HOH A 46 546 3 HOH HOH . H 4 HOH A 47 547 19 HOH HOH . H 4 HOH A 48 548 1 HOH HOH . H 4 HOH A 49 549 83 HOH HOH . H 4 HOH A 50 550 17 HOH HOH . H 4 HOH A 51 551 45 HOH HOH . H 4 HOH A 52 552 7 HOH HOH . H 4 HOH A 53 553 54 HOH HOH . H 4 HOH A 54 554 96 HOH HOH . H 4 HOH A 55 555 73 HOH HOH . H 4 HOH A 56 556 92 HOH HOH . H 4 HOH A 57 557 36 HOH HOH . H 4 HOH A 58 558 26 HOH HOH . H 4 HOH A 59 559 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 2 33.402 26.838 11.171 1 23.46 ? PA NAD 402 A 1 HETATM 2 O O1A NAD . . . F 2 33.535 26.947 12.662 1 21.15 ? O1A NAD 402 A 1 HETATM 3 O O2A NAD . . . F 2 33.795 28.005 10.319 1 23.85 ? O2A NAD 402 A 1 HETATM 4 O O5B NAD . . . F 2 31.922 26.424 10.73 1 22.78 ? O5B NAD 402 A 1 HETATM 5 C C5B NAD . . . F 2 31.122 25.763 11.715 1 22.12 ? C5B NAD 402 A 1 HETATM 6 C C4B NAD . . . F 2 29.902 26.6 11.929 1 23.07 ? C4B NAD 402 A 1 HETATM 7 O O4B NAD . . . F 2 29.022 25.87 12.814 1 21.18 ? O4B NAD 402 A 1 HETATM 8 C C3B NAD . . . F 2 30.151 27.963 12.583 1 22.21 ? C3B NAD 402 A 1 HETATM 9 O O3B NAD . . . F 2 29.518 29.019 11.862 1 20.31 ? O3B NAD 402 A 1 HETATM 10 C C2B NAD . . . F 2 29.575 27.775 13.99 1 21.35 ? C2B NAD 402 A 1 HETATM 11 O O2B NAD . . . F 2 29.105 28.976 14.576 1 21.01 ? O2B NAD 402 A 1 HETATM 12 C C1B NAD . . . F 2 28.456 26.784 13.685 1 23.02 ? C1B NAD 402 A 1 HETATM 13 N N9A NAD . . . F 2 27.993 26.003 14.807 1 24.4 ? N9A NAD 402 A 1 HETATM 14 C C8A NAD . . . F 2 28.772 25.378 15.736 1 24.68 ? C8A NAD 402 A 1 HETATM 15 N N7A NAD . . . F 2 28.074 24.721 16.625 1 27.82 ? N7A NAD 402 A 1 HETATM 16 C C5A NAD . . . F 2 26.753 24.953 16.278 1 23.67 ? C5A NAD 402 A 1 HETATM 17 C C6A NAD . . . F 2 25.541 24.547 16.848 1 23.65 ? C6A NAD 402 A 1 HETATM 18 N N6A NAD . . . F 2 25.451 23.784 17.939 1 25.31 ? N6A NAD 402 A 1 HETATM 19 N N1A NAD . . . F 2 24.402 24.928 16.208 1 25.99 ? N1A NAD 402 A 1 HETATM 20 C C2A NAD . . . F 2 24.489 25.683 15.11 1 19.71 ? C2A NAD 402 A 1 HETATM 21 N N3A NAD . . . F 2 25.576 26.125 14.495 1 23.12 ? N3A NAD 402 A 1 HETATM 22 C C4A NAD . . . F 2 26.689 25.725 15.136 1 25.55 ? C4A NAD 402 A 1 HETATM 23 O O3 NAD . . . F 2 34.199 25.538 10.681 1 23.1 ? O3 NAD 402 A 1 HETATM 24 P PN NAD . . . F 2 34.5 25.074 9.162 1 25.5 ? PN NAD 402 A 1 HETATM 25 O O1N NAD . . . F 2 35.954 25.111 8.856 1 26.67 ? O1N NAD 402 A 1 HETATM 26 O O2N NAD . . . F 2 33.565 25.71 8.191 1 22.92 ? O2N NAD 402 A 1 HETATM 27 O O5D NAD . . . F 2 34.093 23.528 9.28 1 25.54 ? O5D NAD 402 A 1 HETATM 28 C C5D NAD . . . F 2 32.693 23.162 9.084 1 23.88 ? C5D NAD 402 A 1 HETATM 29 C C4D NAD . . . F 2 32.515 21.689 9.352 1 24.11 ? C4D NAD 402 A 1 HETATM 30 O O4D NAD . . . F 2 33.539 20.944 8.643 1 24.15 ? O4D NAD 402 A 1 HETATM 31 C C3D NAD . . . F 2 32.639 21.291 10.828 1 24.06 ? C3D NAD 402 A 1 HETATM 32 O O3D NAD . . . F 2 31.731 20.256 11.181 1 26.54 ? O3D NAD 402 A 1 HETATM 33 C C2D NAD . . . F 2 34.099 20.869 10.895 1 21.76 ? C2D NAD 402 A 1 HETATM 34 O O2D NAD . . . F 2 34.238 19.992 11.975 1 23.92 ? O2D NAD 402 A 1 HETATM 35 C C1D NAD . . . F 2 34.233 20.155 9.553 1 24.4 ? C1D NAD 402 A 1 HETATM 36 N N1N NAD . . . F 2 35.609 20.011 9.09 1 24.16 ? N1N NAD 402 A 1 HETATM 37 C C2N NAD . . . F 2 36.441 21.11 9.003 1 26.81 ? C2N NAD 402 A 1 HETATM 38 C C3N NAD . . . F 2 37.789 20.942 8.669 1 28.21 ? C3N NAD 402 A 1 HETATM 39 C C7N NAD . . . F 2 38.722 22.111 8.553 1 26.51 ? C7N NAD 402 A 1 HETATM 40 O O7N NAD . . . F 2 38.301 23.278 8.619 1 33.7 ? O7N NAD 402 A 1 HETATM 41 N N7N NAD . . . F 2 39.99 21.871 8.352 1 27.35 ? N7N NAD 402 A 1 HETATM 42 C C4N NAD . . . F 2 38.254 19.669 8.384 1 28.13 ? C4N NAD 402 A 1 HETATM 43 C C5N NAD . . . F 2 37.385 18.595 8.413 1 24.47 ? C5N NAD 402 A 1 HETATM 44 C C6N NAD . . . F 2 36.078 18.764 8.788 1 21.79 ? C6N NAD 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #