data_8WPG # _model_server_result.job_id -ze2JCIsS49vveN3DaicnA _model_server_result.datetime_utc '2024-11-09 02:01:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":906}' # _entry.id 8WPG # _exptl.entry_id 8WPG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 357.412 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WPG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 O N N ? 7 U N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 2 n D NAG 1 D 1 NAG D 1 NAG 2 n D NAG 2 D 2 NAG D 2 NAG 2 n E NAG 1 E 1 NAG E 1 NAG 2 n E NAG 2 E 2 NAG E 2 NAG 2 n F NAG 1 F 1 NAG F 1 NAG 2 n F NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 71 B CYS 60 1_555 A SG CYS 112 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 247 B CYS 236 1_555 A SG CYS 572 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 369 B CYS 358 1_555 A SG CYS 406 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 448 B CYS 437 1_555 A SG CYS 460 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? disulf ? disulf5 A SG CYS 553 B CYS 542 1_555 A SG CYS 573 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 557 B CYS 546 1_555 A SG CYS 576 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 579 B CYS 568 1_555 A SG CYS 593 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 596 B CYS 585 1_555 A SG CYS 609 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 688 B CYS 677 1_555 A SG CYS 776 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 71 A CYS 60 1_555 B SG CYS 112 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 B SG CYS 247 A CYS 236 1_555 B SG CYS 572 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 B SG CYS 369 A CYS 358 1_555 B SG CYS 406 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 B SG CYS 448 A CYS 437 1_555 B SG CYS 460 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 553 A CYS 542 1_555 B SG CYS 573 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 557 A CYS 546 1_555 B SG CYS 576 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 B SG CYS 579 A CYS 568 1_555 B SG CYS 593 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 B SG CYS 596 A CYS 585 1_555 B SG CYS 609 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 B SG CYS 688 A CYS 677 1_555 B SG CYS 776 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 272 B ASN 261 1_555 G C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 298 B ASN 287 1_555 H C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 479 B ASN 468 1_555 I C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 499 B ASN 488 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 A ND2 ASN 552 B ASN 541 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 272 A ASN 261 1_555 P C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 B ND2 ASN 298 A ASN 287 1_555 Q C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 B ND2 ASN 499 A ASN 488 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale9 B ND2 ASN 552 A ASN 541 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A O ILE 92 B ILE 81 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc2 A O SER 95 B SER 84 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc3 A O LEU 98 B LEU 87 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 A O LEU 99 B LEU 88 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc5 A OD1 ASP 245 B ASP 234 1_555 M CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc6 A O GLY 568 B GLY 557 1_555 L CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc7 M CA CA . B CA 907 1_555 B O GLY 568 A GLY 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 B O ILE 92 A ILE 81 1_555 S CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc9 B O SER 95 A SER 84 1_555 S CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C22 H22 F3 N' _chem_comp.formula_weight 357.412 _chem_comp.id YP4 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N YP4 sing 408 n n C3 C4 YP4 sing 409 n n N CA YP4 sing 410 n n C5 C4 YP4 sing 411 n n C5 C6 YP4 sing 412 n n C11 C6 YP4 doub 413 n y C11 C10 YP4 sing 414 n y C1 CA YP4 sing 415 n n CA CB YP4 sing 416 n n C6 C7 YP4 sing 417 n y C10 C9 YP4 doub 418 n y C14 CB YP4 doub 419 n y C14 C15 YP4 sing 420 n y CB CG YP4 sing 421 n y C7 C8 YP4 doub 422 n y C15 C16 YP4 doub 423 n y C9 C8 YP4 sing 424 n y C8 C12 YP4 sing 425 n n CG CD2 YP4 doub 426 n y CG CD1 YP4 sing 427 n y CD2 CE2 YP4 sing 428 n y C16 CD1 YP4 sing 429 n y CD1 CE1 YP4 doub 430 n y F2 C12 YP4 sing 431 n n C12 F3 YP4 sing 432 n n C12 F1 YP4 sing 433 n n CE2 CZ YP4 doub 434 n y CE1 CZ YP4 sing 435 n y C1 H1 YP4 sing 436 n n C1 H2 YP4 sing 437 n n C1 H3 YP4 sing 438 n n C3 H4 YP4 sing 439 n n C3 H5 YP4 sing 440 n n C4 H6 YP4 sing 441 n n C4 H7 YP4 sing 442 n n C5 H8 YP4 sing 443 n n C5 H9 YP4 sing 444 n n N H10 YP4 sing 445 n n CA H12 YP4 sing 446 n n CD2 H13 YP4 sing 447 n n CE1 H14 YP4 sing 448 n n CE2 H15 YP4 sing 449 n n CZ H16 YP4 sing 450 n n C7 H17 YP4 sing 451 n n C9 H18 YP4 sing 452 n n C10 H19 YP4 sing 453 n n C11 H20 YP4 sing 454 n n C14 H21 YP4 sing 455 n n C15 H22 YP4 sing 456 n n C16 H23 YP4 sing 457 n n # _atom_sites.entry_id 8WPG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG B 1 901 901 NAG NAG . H 3 NAG B 1 902 902 NAG NAG . I 3 NAG B 1 903 903 NAG NAG . J 4 TRP B 1 904 910 TRP TRP . K 5 CA B 1 905 911 CA CA . L 5 CA B 1 906 912 CA CA . M 5 CA B 1 907 913 CA CA . N 6 PO4 B 1 908 914 PO4 PO4 . O 7 YP4 B 1 909 915 YP4 YP4 . P 3 NAG A 1 901 901 NAG NAG . Q 3 NAG A 1 902 902 NAG NAG . R 4 TRP A 1 903 912 TRP TRP . S 5 CA A 1 904 913 CA CA . T 6 PO4 A 1 905 914 PO4 PO4 . U 7 YP4 A 1 906 915 YP4 YP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YP4 . . . U 7 205.203 189.754 171.045 1 118.85 ? C1 YP4 906 A 1 HETATM 2 C C3 YP4 . . . U 7 206.12 192.345 173.327 1 120.08 ? C3 YP4 906 A 1 HETATM 3 C C4 YP4 . . . U 7 204.951 193.117 172.674 1 120.02 ? C4 YP4 906 A 1 HETATM 4 C C5 YP4 . . . U 7 205.226 194.611 172.537 1 120.81 ? C5 YP4 906 A 1 HETATM 5 C C6 YP4 . . . U 7 204.248 195.352 171.675 1 120.94 ? C6 YP4 906 A 1 HETATM 6 N N YP4 . . . U 7 206.553 191.145 172.572 1 121.11 ? N YP4 906 A 1 HETATM 7 C CA YP4 . . . U 7 206.039 191.035 171.175 1 120.94 ? CA YP4 906 A 1 HETATM 8 C CB YP4 . . . U 7 207.197 191.006 170.206 1 120.79 ? CB YP4 906 A 1 HETATM 9 C CG YP4 . . . U 7 207.157 191.768 169.004 1 120.13 ? CG YP4 906 A 1 HETATM 10 C CD1 YP4 . . . U 7 208.247 191.721 168.124 1 119.8 ? CD1 YP4 906 A 1 HETATM 11 C CD2 YP4 . . . U 7 206.048 192.579 168.657 1 120.87 ? CD2 YP4 906 A 1 HETATM 12 C CE1 YP4 . . . U 7 208.221 192.473 166.923 1 120.84 ? CE1 YP4 906 A 1 HETATM 13 C CE2 YP4 . . . U 7 206.038 193.298 167.496 1 119.8 ? CE2 YP4 906 A 1 HETATM 14 C CZ YP4 . . . U 7 207.141 193.246 166.615 1 120.86 ? CZ YP4 906 A 1 HETATM 15 C C7 YP4 . . . U 7 204.66 195.964 170.493 1 120.32 ? C7 YP4 906 A 1 HETATM 16 C C8 YP4 . . . U 7 203.734 196.644 169.71 1 120.69 ? C8 YP4 906 A 1 HETATM 17 C C9 YP4 . . . U 7 202.398 196.734 170.078 1 119.63 ? C9 YP4 906 A 1 HETATM 18 C C10 YP4 . . . U 7 201.991 196.12 171.256 1 120.34 ? C10 YP4 906 A 1 HETATM 19 C C11 YP4 . . . U 7 202.906 195.438 172.049 1 120.51 ? C11 YP4 906 A 1 HETATM 20 C C12 YP4 . . . U 7 204.209 197.3 168.429 1 121.81 ? C12 YP4 906 A 1 HETATM 21 C C14 YP4 . . . U 7 208.295 190.241 170.485 1 121.24 ? C14 YP4 906 A 1 HETATM 22 C C15 YP4 . . . U 7 209.391 190.197 169.593 1 121.27 ? C15 YP4 906 A 1 HETATM 23 C C16 YP4 . . . U 7 209.37 190.919 168.438 1 121 ? C16 YP4 906 A 1 HETATM 24 F F1 YP4 . . . U 7 203.32 198.104 167.826 1 122.66 ? F1 YP4 906 A 1 HETATM 25 F F2 YP4 . . . U 7 204.549 196.419 167.468 1 121.77 ? F2 YP4 906 A 1 HETATM 26 F F3 YP4 . . . U 7 205.295 198.061 168.602 1 120.85 ? F3 YP4 906 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 228 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #