data_8WQ7 # _model_server_result.job_id PH1MGpPxtcRgdI9sl_Qlrw _model_server_result.datetime_utc '2024-10-14 05:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 8WQ7 # _exptl.entry_id 8WQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.554 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-di(acridin-9-yl)butane-1,4-diamine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WQ7 _cell.length_a 34.462 _cell.length_b 34.49 _cell.length_c 69.033 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OP2 DT 5 A DT 5 1_555 C MN MN . A MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 C MN MN . A MN 101 1_555 F O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 C MN MN . A MN 101 1_555 G O HOH . B HOH 204 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc4 C MN MN . A MN 101 1_555 G O HOH . B HOH 212 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 C MN MN . A MN 101 1_555 G O HOH . B HOH 213 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc6 C MN MN . A MN 101 1_555 G O HOH . B HOH 215 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc7 F O HOH . A HOH 203 4_545 D MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 F O HOH . A HOH 206 4_545 D MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc9 F O HOH . A HOH 209 4_545 D MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc10 B OP2 DT 5 B DT 5 1_555 D MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc11 D MN MN . B MN 101 1_555 G O HOH . B HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc12 D MN MN . B MN 101 1_555 G O HOH . B HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 7 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 7 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 7 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 B N1 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 B N6 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 4 1_555 B N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 4 1_555 B O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 5 A DT 5 1_555 B N1 DA 4 B DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 5 A DT 5 1_555 B N6 DA 4 B DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 6 A DA 6 1_555 B N3 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 6 A DA 6 1_555 B O4 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 7 A DC 7 1_555 B N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 7 A DC 7 1_555 B O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 7 A DC 7 1_555 B N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 8 A DG 8 1_555 B N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 8 A DG 8 1_555 B O2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 8 A DG 8 1_555 B N4 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C30 H26 N4' _chem_comp.formula_weight 442.554 _chem_comp.id XA5 _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-di(acridin-9-yl)butane-1,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 XA5 doub 152 n y C6 C5 XA5 sing 153 n y C13 C12 XA5 doub 154 n y C13 C7 XA5 sing 155 n y N1 C5 XA5 doub 156 n y N1 C7 XA5 sing 157 n y C1 C2 XA5 sing 158 n y C12 C11 XA5 sing 159 n y C5 C4 XA5 sing 160 n y C7 C8 XA5 doub 161 n y C2 C3 XA5 doub 162 n y C11 C10 XA5 doub 163 n y C4 C3 XA5 sing 164 n y C4 C9 XA5 doub 165 n y C8 C10 XA5 sing 166 n y C8 C9 XA5 sing 167 n y C9 N2 XA5 sing 168 n n N2 C14 XA5 sing 169 n n C14 CBD XA5 sing 170 n n CBD CBC XA5 sing 171 n n CBC CBB XA5 sing 172 n n CBB NAB XA5 sing 173 n n NAB CAQ XA5 sing 174 n n CAQ CAL XA5 doub 175 n y CAQ CAP XA5 sing 176 n y CAK CAL XA5 sing 177 n y CAK CAJ XA5 doub 178 n y CAR CAP XA5 doub 179 n y CAR CAS XA5 sing 180 n y CAL CAM XA5 sing 181 n y CAJ CAI XA5 sing 182 n y CAP CAO XA5 sing 183 n y CAS CAU XA5 doub 184 n y CAM NAA XA5 doub 185 n y CAM CAN XA5 sing 186 n y CAI CAN XA5 doub 187 n y CAO NAA XA5 sing 188 n y CAO CAV XA5 doub 189 n y CAU CAV XA5 sing 190 n y C1 H1 XA5 sing 191 n n C2 H2 XA5 sing 192 n n C3 H3 XA5 sing 193 n n C11 H4 XA5 sing 194 n n CAI H5 XA5 sing 195 n n CAJ H6 XA5 sing 196 n n CAK H7 XA5 sing 197 n n CAN H8 XA5 sing 198 n n CAR H9 XA5 sing 199 n n CAS H10 XA5 sing 200 n n CAU H11 XA5 sing 201 n n CAV H12 XA5 sing 202 n n CBB H13 XA5 sing 203 n n CBB H14 XA5 sing 204 n n CBC H15 XA5 sing 205 n n CBC H16 XA5 sing 206 n n CBD H17 XA5 sing 207 n n CBD H18 XA5 sing 208 n n NAB H19 XA5 sing 209 n n C6 H20 XA5 sing 210 n n C10 H21 XA5 sing 211 n n C12 H22 XA5 sing 212 n n C13 H23 XA5 sing 213 n n C14 H24 XA5 sing 214 n n C14 H25 XA5 sing 215 n n N2 H26 XA5 sing 216 n n # _atom_sites.entry_id 8WQ7 _atom_sites.fract_transf_matrix[1][1] 0.029017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 101 2 MN MN . D 2 MN B 1 101 1 MN MN . E 3 XA5 B 1 102 102 XA5 F1R . F 4 HOH A 1 201 32 HOH HOH . F 4 HOH A 2 202 12 HOH HOH . F 4 HOH A 3 203 3 HOH HOH . F 4 HOH A 4 204 11 HOH HOH . F 4 HOH A 5 205 55 HOH HOH . F 4 HOH A 6 206 4 HOH HOH . F 4 HOH A 7 207 31 HOH HOH . F 4 HOH A 8 208 24 HOH HOH . F 4 HOH A 9 209 1 HOH HOH . F 4 HOH A 10 210 37 HOH HOH . F 4 HOH A 11 211 13 HOH HOH . F 4 HOH A 12 212 16 HOH HOH . F 4 HOH A 13 213 7 HOH HOH . F 4 HOH A 14 214 48 HOH HOH . F 4 HOH A 15 215 19 HOH HOH . F 4 HOH A 16 216 59 HOH HOH . F 4 HOH A 17 217 56 HOH HOH . F 4 HOH A 18 218 60 HOH HOH . F 4 HOH A 19 219 36 HOH HOH . G 4 HOH B 1 201 22 HOH HOH . G 4 HOH B 2 202 18 HOH HOH . G 4 HOH B 3 203 42 HOH HOH . G 4 HOH B 4 204 6 HOH HOH . G 4 HOH B 5 205 57 HOH HOH . G 4 HOH B 6 206 27 HOH HOH . G 4 HOH B 7 207 39 HOH HOH . G 4 HOH B 8 208 33 HOH HOH . G 4 HOH B 9 209 14 HOH HOH . G 4 HOH B 10 210 58 HOH HOH . G 4 HOH B 11 211 45 HOH HOH . G 4 HOH B 12 212 8 HOH HOH . G 4 HOH B 13 213 10 HOH HOH . G 4 HOH B 14 214 21 HOH HOH . G 4 HOH B 15 215 9 HOH HOH . G 4 HOH B 16 216 50 HOH HOH . G 4 HOH B 17 217 2 HOH HOH . G 4 HOH B 18 218 47 HOH HOH . G 4 HOH B 19 219 51 HOH HOH . G 4 HOH B 20 220 5 HOH HOH . G 4 HOH B 21 221 54 HOH HOH . G 4 HOH B 22 222 61 HOH HOH . G 4 HOH B 23 223 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XA5 . . . E 3 -10.456 -28.195 -15.024 0.94 18.57 ? C1 XA5 102 B 1 HETATM 2 C C2 XA5 . . . E 3 -10.093 -28.155 -13.678 1 20.31 ? C2 XA5 102 B 1 HETATM 3 C C3 XA5 . . . E 3 -10.207 -26.965 -12.965 1 21.87 ? C3 XA5 102 B 1 HETATM 4 C C4 XA5 . . . E 3 -10.696 -25.786 -13.599 1 18.93 ? C4 XA5 102 B 1 HETATM 5 C C5 XA5 . . . E 3 -11.054 -25.83 -14.918 0.81 18.56 ? C5 XA5 102 B 1 HETATM 6 C C7 XA5 . . . E 3 -11.661 -23.528 -14.903 0.69 15.43 ? C7 XA5 102 B 1 HETATM 7 C C9 XA5 . . . E 3 -10.823 -24.559 -12.859 1 21.71 ? C9 XA5 102 B 1 HETATM 8 C C11 XA5 . . . E 3 -11.973 -21.033 -13.664 0.78 17.68 ? C11 XA5 102 B 1 HETATM 9 C CAI XA5 . . . E 3 -6.337 -23.999 -2.346 0.87 16 ? CAI XA5 102 B 1 HETATM 10 C CAJ XA5 . . . E 3 -6.426 -24.39 -3.682 1 17.96 ? CAJ XA5 102 B 1 HETATM 11 C CAK XA5 . . . E 3 -7.633 -24.272 -4.367 0.78 17.79 ? CAK XA5 102 B 1 HETATM 12 C CAL XA5 . . . E 3 -8.787 -23.759 -3.712 1 17.49 ? CAL XA5 102 B 1 HETATM 13 C CAM XA5 . . . E 3 -8.698 -23.375 -2.398 0.9 18.22 ? CAM XA5 102 B 1 HETATM 14 C CAN XA5 . . . E 3 -7.461 -23.492 -1.694 0.83 18.86 ? CAN XA5 102 B 1 HETATM 15 C CAO XA5 . . . E 3 -10.992 -22.733 -2.335 0.77 16.86 ? CAO XA5 102 B 1 HETATM 16 C CAP XA5 . . . E 3 -11.155 -23.093 -3.647 0.96 16.84 ? CAP XA5 102 B 1 HETATM 17 C CAQ XA5 . . . E 3 -10.049 -23.613 -4.398 1 20.64 ? CAQ XA5 102 B 1 HETATM 18 C CAR XA5 . . . E 3 -12.423 -22.945 -4.273 1 20.73 ? CAR XA5 102 B 1 HETATM 19 C CAS XA5 . . . E 3 -13.495 -22.438 -3.547 1 20.76 ? CAS XA5 102 B 1 HETATM 20 C CAU XA5 . . . E 3 -13.327 -22.062 -2.209 0.61 19.04 ? CAU XA5 102 B 1 HETATM 21 C CAV XA5 . . . E 3 -12.09 -22.207 -1.593 0.95 20.53 ? CAV XA5 102 B 1 HETATM 22 C CBB XA5 . . . E 3 -9.73 -23.416 -6.966 0.67 29.41 ? CBB XA5 102 B 1 HETATM 23 C CBC XA5 . . . E 3 -10.729 -23.642 -8.101 0.88 27.88 ? CBC XA5 102 B 1 HETATM 24 C CBD XA5 . . . E 3 -10.131 -24.325 -9.322 0.81 26.75 ? CBD XA5 102 B 1 HETATM 25 N NAA XA5 . . . E 3 -9.78 -22.873 -1.728 0.98 19.3 ? NAA XA5 102 B 1 HETATM 26 N NAB XA5 . . . E 3 -10.282 -24.011 -5.772 1 27.69 ? NAB XA5 102 B 1 HETATM 27 C C6 XA5 . . . E 3 -10.937 -27.049 -15.656 0.82 19.89 ? C6 XA5 102 B 1 HETATM 28 C C8 XA5 . . . E 3 -11.327 -23.402 -13.573 0.87 15.67 ? C8 XA5 102 B 1 HETATM 29 C C10 XA5 . . . E 3 -11.483 -22.124 -12.952 1 19.3 ? C10 XA5 102 B 1 HETATM 30 C C12 XA5 . . . E 3 -12.317 -21.179 -15.013 0.77 17.85 ? C12 XA5 102 B 1 HETATM 31 C C13 XA5 . . . E 3 -12.161 -22.412 -15.637 0.76 18.42 ? C13 XA5 102 B 1 HETATM 32 C C14 XA5 . . . E 3 -11.168 -24.029 -10.351 0.92 29.76 ? C14 XA5 102 B 1 HETATM 33 N N1 XA5 . . . E 3 -11.529 -24.719 -15.553 0.91 16.52 ? N1 XA5 102 B 1 HETATM 34 N N2 XA5 . . . E 3 -10.409 -24.563 -11.463 1 26.55 ? N2 XA5 102 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #