data_8WQM # _model_server_result.job_id t2yRVWQcAfQFDAP6Td23pQ _model_server_result.datetime_utc '2024-11-14 13:45:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8WQM # _exptl.entry_id 8WQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.837 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.01 _cell.angle_gamma 90 _cell.entry_id 8WQM _cell.length_a 76.921 _cell.length_b 84.292 _cell.length_c 62.332 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -21.669104 0 122.766294 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 373 A CYS 401 1_555 A SG CYS 388 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A NE2 HIS 198 A HIS 226 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A NE2 HIS 280 A HIS 308 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A OE1 GLU 366 A GLU 394 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 B CO CO . A CO 501 1_555 C O2 AOQ . A AOQ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 B CO CO . A CO 501 1_555 C O6 AOQ . A AOQ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc6 B CO CO . A CO 501 1_555 D O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C22 H19 Cl O3' _chem_comp.formula_weight 366.837 _chem_comp.id AOQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Atovaquone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 AOQ doub 13 n y C7 C6 AOQ sing 14 n y C8 C9 AOQ sing 15 n y O1 C1 AOQ doub 16 n n C6 C5 AOQ doub 17 n y C9 C1 AOQ sing 18 n n C9 C10 AOQ doub 19 n y C1 C2 AOQ sing 20 n n C11 C12 AOQ sing 21 n n C11 C16 AOQ sing 22 n n C12 C13 AOQ sing 23 n n C5 C10 AOQ sing 24 n y C18 C19 AOQ doub 25 n y C18 C17 AOQ sing 26 n y C13 C17 AOQ sing 27 n n C13 C14 AOQ sing 28 n n C10 C4 AOQ sing 29 n n C19 C20 AOQ sing 30 n y C17 C22 AOQ doub 31 n y C20 C21 AOQ doub 32 n y C20 CL AOQ sing 33 n n C2 C16 AOQ sing 34 n n C2 C3 AOQ doub 35 n n C22 C21 AOQ sing 36 n y C16 C15 AOQ sing 37 n n C15 C14 AOQ sing 38 n n C4 C3 AOQ sing 39 n n C4 O2 AOQ doub 40 n n C3 O6 AOQ sing 41 n n C5 H1 AOQ sing 42 n n C6 H2 AOQ sing 43 n n C7 H3 AOQ sing 44 n n C8 H4 AOQ sing 45 n n O6 H5 AOQ sing 46 n n C11 H6 AOQ sing 47 n n C11 H7 AOQ sing 48 n n C12 H8 AOQ sing 49 n n C12 H9 AOQ sing 50 n n C13 H10 AOQ sing 51 n n C14 H11 AOQ sing 52 n n C14 H12 AOQ sing 53 n n C15 H13 AOQ sing 54 n n C15 H14 AOQ sing 55 n n C16 H15 AOQ sing 56 n n C18 H16 AOQ sing 57 n n C19 H17 AOQ sing 58 n n C21 H18 AOQ sing 59 n n C22 H19 AOQ sing 60 n n # _atom_sites.entry_id 8WQM _atom_sites.fract_transf_matrix[1][1] 0.013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002295 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 501 1 CO CO . C 3 AOQ A 1 502 501 AOQ LIG . D 4 HOH A 1 601 43 HOH HOH . D 4 HOH A 2 602 140 HOH HOH . D 4 HOH A 3 603 163 HOH HOH . D 4 HOH A 4 604 65 HOH HOH . D 4 HOH A 5 605 18 HOH HOH . D 4 HOH A 6 606 147 HOH HOH . D 4 HOH A 7 607 84 HOH HOH . D 4 HOH A 8 608 129 HOH HOH . D 4 HOH A 9 609 161 HOH HOH . D 4 HOH A 10 610 71 HOH HOH . D 4 HOH A 11 611 19 HOH HOH . D 4 HOH A 12 612 113 HOH HOH . D 4 HOH A 13 613 45 HOH HOH . D 4 HOH A 14 614 118 HOH HOH . D 4 HOH A 15 615 30 HOH HOH . D 4 HOH A 16 616 124 HOH HOH . D 4 HOH A 17 617 48 HOH HOH . D 4 HOH A 18 618 72 HOH HOH . D 4 HOH A 19 619 61 HOH HOH . D 4 HOH A 20 620 165 HOH HOH . D 4 HOH A 21 621 88 HOH HOH . D 4 HOH A 22 622 28 HOH HOH . D 4 HOH A 23 623 73 HOH HOH . D 4 HOH A 24 624 21 HOH HOH . D 4 HOH A 25 625 83 HOH HOH . D 4 HOH A 26 626 59 HOH HOH . D 4 HOH A 27 627 139 HOH HOH . D 4 HOH A 28 628 69 HOH HOH . D 4 HOH A 29 629 75 HOH HOH . D 4 HOH A 30 630 17 HOH HOH . D 4 HOH A 31 631 4 HOH HOH . D 4 HOH A 32 632 78 HOH HOH . D 4 HOH A 33 633 56 HOH HOH . D 4 HOH A 34 634 33 HOH HOH . D 4 HOH A 35 635 14 HOH HOH . D 4 HOH A 36 636 37 HOH HOH . D 4 HOH A 37 637 1 HOH HOH . D 4 HOH A 38 638 81 HOH HOH . D 4 HOH A 39 639 54 HOH HOH . D 4 HOH A 40 640 9 HOH HOH . D 4 HOH A 41 641 51 HOH HOH . D 4 HOH A 42 642 132 HOH HOH . D 4 HOH A 43 643 107 HOH HOH . D 4 HOH A 44 644 27 HOH HOH . D 4 HOH A 45 645 109 HOH HOH . D 4 HOH A 46 646 64 HOH HOH . D 4 HOH A 47 647 49 HOH HOH . D 4 HOH A 48 648 146 HOH HOH . D 4 HOH A 49 649 166 HOH HOH . D 4 HOH A 50 650 15 HOH HOH . D 4 HOH A 51 651 122 HOH HOH . D 4 HOH A 52 652 25 HOH HOH . D 4 HOH A 53 653 67 HOH HOH . D 4 HOH A 54 654 86 HOH HOH . D 4 HOH A 55 655 125 HOH HOH . D 4 HOH A 56 656 77 HOH HOH . D 4 HOH A 57 657 159 HOH HOH . D 4 HOH A 58 658 154 HOH HOH . D 4 HOH A 59 659 110 HOH HOH . D 4 HOH A 60 660 87 HOH HOH . D 4 HOH A 61 661 98 HOH HOH . D 4 HOH A 62 662 63 HOH HOH . D 4 HOH A 63 663 104 HOH HOH . D 4 HOH A 64 664 119 HOH HOH . D 4 HOH A 65 665 20 HOH HOH . D 4 HOH A 66 666 70 HOH HOH . D 4 HOH A 67 667 99 HOH HOH . D 4 HOH A 68 668 96 HOH HOH . D 4 HOH A 69 669 13 HOH HOH . D 4 HOH A 70 670 39 HOH HOH . D 4 HOH A 71 671 31 HOH HOH . D 4 HOH A 72 672 41 HOH HOH . D 4 HOH A 73 673 16 HOH HOH . D 4 HOH A 74 674 44 HOH HOH . D 4 HOH A 75 675 89 HOH HOH . D 4 HOH A 76 676 38 HOH HOH . D 4 HOH A 77 677 11 HOH HOH . D 4 HOH A 78 678 82 HOH HOH . D 4 HOH A 79 679 55 HOH HOH . D 4 HOH A 80 680 79 HOH HOH . D 4 HOH A 81 681 22 HOH HOH . D 4 HOH A 82 682 58 HOH HOH . D 4 HOH A 83 683 91 HOH HOH . D 4 HOH A 84 684 68 HOH HOH . D 4 HOH A 85 685 136 HOH HOH . D 4 HOH A 86 686 34 HOH HOH . D 4 HOH A 87 687 10 HOH HOH . D 4 HOH A 88 688 90 HOH HOH . D 4 HOH A 89 689 26 HOH HOH . D 4 HOH A 90 690 40 HOH HOH . D 4 HOH A 91 691 145 HOH HOH . D 4 HOH A 92 692 47 HOH HOH . D 4 HOH A 93 693 112 HOH HOH . D 4 HOH A 94 694 106 HOH HOH . D 4 HOH A 95 695 164 HOH HOH . D 4 HOH A 96 696 74 HOH HOH . D 4 HOH A 97 697 3 HOH HOH . D 4 HOH A 98 698 121 HOH HOH . D 4 HOH A 99 699 80 HOH HOH . D 4 HOH A 100 700 6 HOH HOH . D 4 HOH A 101 701 120 HOH HOH . D 4 HOH A 102 702 8 HOH HOH . D 4 HOH A 103 703 53 HOH HOH . D 4 HOH A 104 704 103 HOH HOH . D 4 HOH A 105 705 60 HOH HOH . D 4 HOH A 106 706 32 HOH HOH . D 4 HOH A 107 707 5 HOH HOH . D 4 HOH A 108 708 143 HOH HOH . D 4 HOH A 109 709 95 HOH HOH . D 4 HOH A 110 710 46 HOH HOH . D 4 HOH A 111 711 148 HOH HOH . D 4 HOH A 112 712 66 HOH HOH . D 4 HOH A 113 713 29 HOH HOH . D 4 HOH A 114 714 127 HOH HOH . D 4 HOH A 115 715 156 HOH HOH . D 4 HOH A 116 716 92 HOH HOH . D 4 HOH A 117 717 100 HOH HOH . D 4 HOH A 118 718 7 HOH HOH . D 4 HOH A 119 719 12 HOH HOH . D 4 HOH A 120 720 158 HOH HOH . D 4 HOH A 121 721 111 HOH HOH . D 4 HOH A 122 722 52 HOH HOH . D 4 HOH A 123 723 101 HOH HOH . D 4 HOH A 124 724 24 HOH HOH . D 4 HOH A 125 725 142 HOH HOH . D 4 HOH A 126 726 114 HOH HOH . D 4 HOH A 127 727 36 HOH HOH . D 4 HOH A 128 728 134 HOH HOH . D 4 HOH A 129 729 128 HOH HOH . D 4 HOH A 130 730 131 HOH HOH . D 4 HOH A 131 731 150 HOH HOH . D 4 HOH A 132 732 76 HOH HOH . D 4 HOH A 133 733 123 HOH HOH . D 4 HOH A 134 734 102 HOH HOH . D 4 HOH A 135 735 42 HOH HOH . D 4 HOH A 136 736 62 HOH HOH . D 4 HOH A 137 737 116 HOH HOH . D 4 HOH A 138 738 162 HOH HOH . D 4 HOH A 139 739 23 HOH HOH . D 4 HOH A 140 740 137 HOH HOH . D 4 HOH A 141 741 168 HOH HOH . D 4 HOH A 142 742 94 HOH HOH . D 4 HOH A 143 743 115 HOH HOH . D 4 HOH A 144 744 138 HOH HOH . D 4 HOH A 145 745 151 HOH HOH . D 4 HOH A 146 746 97 HOH HOH . D 4 HOH A 147 747 126 HOH HOH . D 4 HOH A 148 748 130 HOH HOH . D 4 HOH A 149 749 57 HOH HOH . D 4 HOH A 150 750 50 HOH HOH . D 4 HOH A 151 751 2 HOH HOH . D 4 HOH A 152 752 149 HOH HOH . D 4 HOH A 153 753 85 HOH HOH . D 4 HOH A 154 754 135 HOH HOH . D 4 HOH A 155 755 157 HOH HOH . D 4 HOH A 156 756 155 HOH HOH . D 4 HOH A 157 757 160 HOH HOH . D 4 HOH A 158 758 108 HOH HOH . D 4 HOH A 159 759 144 HOH HOH . D 4 HOH A 160 760 152 HOH HOH . D 4 HOH A 161 761 117 HOH HOH . D 4 HOH A 162 762 169 HOH HOH . D 4 HOH A 163 763 35 HOH HOH . D 4 HOH A 164 764 167 HOH HOH . D 4 HOH A 165 765 93 HOH HOH . D 4 HOH A 166 766 153 HOH HOH . D 4 HOH A 167 767 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 AOQ . . . C 3 4.156 -4.076 86.288 1 38.19 ? O1 AOQ 502 A 1 HETATM 2 O O2 AOQ . . . C 3 5.72 -4.183 81.352 1 29.15 ? O2 AOQ 502 A 1 HETATM 3 C C1 AOQ . . . C 3 4.486 -4.075 85.15 1 40.49 ? C1 AOQ 502 A 1 HETATM 4 C C2 AOQ . . . C 3 3.747 -3.417 84.16 1 37.36 ? C2 AOQ 502 A 1 HETATM 5 C C3 AOQ . . . C 3 4.197 -3.454 82.838 1 34.89 ? C3 AOQ 502 A 1 HETATM 6 C C4 AOQ . . . C 3 5.346 -4.154 82.488 1 36.35 ? C4 AOQ 502 A 1 HETATM 7 C C5 AOQ . . . C 3 7.222 -5.501 83.149 1 33.06 ? C5 AOQ 502 A 1 HETATM 8 C C6 AOQ . . . C 3 7.938 -6.166 84.145 1 38.64 ? C6 AOQ 502 A 1 HETATM 9 C C7 AOQ . . . C 3 7.5 -6.121 85.461 1 41.24 ? C7 AOQ 502 A 1 HETATM 10 C C8 AOQ . . . C 3 6.348 -5.424 85.792 1 42.39 ? C8 AOQ 502 A 1 HETATM 11 C C9 AOQ . . . C 3 5.634 -4.768 84.801 1 38.7 ? C9 AOQ 502 A 1 HETATM 12 C C10 AOQ . . . C 3 6.07 -4.809 83.481 1 32.94 ? C10 AOQ 502 A 1 HETATM 13 O O6 AOQ . . . C 3 3.484 -2.781 81.841 1 30.25 ? O6 AOQ 502 A 1 HETATM 14 C C11 AOQ . . . C 3 1.341 -3.427 85.115 1 40.65 ? C11 AOQ 502 A 1 HETATM 15 C C12 AOQ . . . C 3 0.135 -2.53 85.379 1 45.59 ? C12 AOQ 502 A 1 HETATM 16 C C13 AOQ . . . C 3 0.521 -1.421 86.356 1 48.49 ? C13 AOQ 502 A 1 HETATM 17 C C14 AOQ . . . C 3 1.661 -0.573 85.779 1 39.46 ? C14 AOQ 502 A 1 HETATM 18 C C15 AOQ . . . C 3 2.869 -1.444 85.411 1 37.9 ? C15 AOQ 502 A 1 HETATM 19 C C16 AOQ . . . C 3 2.474 -2.609 84.486 1 38.62 ? C16 AOQ 502 A 1 HETATM 20 CL CL AOQ . . . C 3 -3.993 2.468 87.607 1 84.94 ? CL AOQ 502 A 1 HETATM 21 C C17 AOQ . . . C 3 -0.632 -0.457 86.64 1 52.56 ? C17 AOQ 502 A 1 HETATM 22 C C18 AOQ . . . C 3 -1.49 -0.046 85.631 1 54.77 ? C18 AOQ 502 A 1 HETATM 23 C C19 AOQ . . . C 3 -2.516 0.842 85.922 1 59.66 ? C19 AOQ 502 A 1 HETATM 24 C C20 AOQ . . . C 3 -2.675 1.323 87.214 1 70.15 ? C20 AOQ 502 A 1 HETATM 25 C C21 AOQ . . . C 3 -1.811 0.917 88.218 1 62.09 ? C21 AOQ 502 A 1 HETATM 26 C C22 AOQ . . . C 3 -0.789 0.031 87.925 1 56.69 ? C22 AOQ 502 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #