data_8WR2 # _model_server_result.job_id ZPJHg94xAUFINrf54r7ssQ _model_server_result.datetime_utc '2024-11-24 14:57:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 8WR2 # _exptl.entry_id 8WR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WR2 _cell.length_a 94.54 _cell.length_b 116.11 _cell.length_c 169.08 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 404 TRE 2 n C GLC 2 C 2 GLC A 404 TRE 2 n D GLC 1 D 1 GLC B 404 TRE 2 n D GLC 2 D 2 GLC B 404 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale2 D C1 GLC . D GLC 1 1_555 D O1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? metalc ? metalc1 A O THR 148 B THR 148 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc2 E NA NA . B NA 401 1_555 F O6 LU2 . B LU2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc3 B O THR 148 A THR 148 1_555 L NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc4 B OG1 THR 186 A THR 186 1_555 L NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc5 L NA NA . A NA 401 1_555 M O6 LU2 . A LU2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8WR2 _atom_sites.fract_transf_matrix[1][1] 0.010578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA B 1 401 401 NA NA . F 4 LU2 B 1 402 402 LU2 LIG . G 5 MPD B 1 403 403 MPD MPD . H 5 MPD B 1 404 405 MPD MPD . I 5 MPD B 1 405 406 MPD MPD . J 6 DMS B 1 406 407 DMS DMS . K 6 DMS B 1 407 408 DMS DMS . L 3 NA A 1 401 401 NA NA . M 4 LU2 A 1 402 402 LU2 LIG . N 5 MPD A 1 403 403 MPD MPD . O 5 MPD A 1 404 405 MPD MPD . P 5 MPD A 1 405 406 MPD MPD . Q 6 DMS A 1 406 407 DMS DMS . R 6 DMS A 1 407 408 DMS DMS . S 7 HOH B 1 601 601 HOH HOH . S 7 HOH B 2 602 603 HOH HOH . S 7 HOH B 3 603 629 HOH HOH . S 7 HOH B 4 604 552 HOH HOH . S 7 HOH B 5 605 548 HOH HOH . S 7 HOH B 6 606 627 HOH HOH . S 7 HOH B 7 607 588 HOH HOH . S 7 HOH B 8 608 602 HOH HOH . S 7 HOH B 9 609 612 HOH HOH . S 7 HOH B 10 610 605 HOH HOH . S 7 HOH B 11 611 539 HOH HOH . S 7 HOH B 12 612 526 HOH HOH . S 7 HOH B 13 613 561 HOH HOH . S 7 HOH B 14 614 633 HOH HOH . S 7 HOH B 15 615 624 HOH HOH . S 7 HOH B 16 616 587 HOH HOH . S 7 HOH B 17 617 548 HOH HOH . S 7 HOH B 18 618 529 HOH HOH . S 7 HOH B 19 619 530 HOH HOH . S 7 HOH B 20 620 610 HOH HOH . S 7 HOH B 21 621 582 HOH HOH . S 7 HOH B 22 622 589 HOH HOH . S 7 HOH B 23 623 521 HOH HOH . S 7 HOH B 24 624 538 HOH HOH . S 7 HOH B 25 625 506 HOH HOH . S 7 HOH B 26 626 575 HOH HOH . S 7 HOH B 27 627 586 HOH HOH . S 7 HOH B 28 628 572 HOH HOH . S 7 HOH B 29 629 631 HOH HOH . S 7 HOH B 30 630 619 HOH HOH . S 7 HOH B 31 631 534 HOH HOH . S 7 HOH B 32 632 606 HOH HOH . S 7 HOH B 33 633 533 HOH HOH . S 7 HOH B 34 634 560 HOH HOH . S 7 HOH B 35 635 520 HOH HOH . S 7 HOH B 36 636 583 HOH HOH . S 7 HOH B 37 637 513 HOH HOH . S 7 HOH B 38 638 593 HOH HOH . S 7 HOH B 39 639 542 HOH HOH . S 7 HOH B 40 640 594 HOH HOH . S 7 HOH B 41 641 512 HOH HOH . S 7 HOH B 42 642 504 HOH HOH . S 7 HOH B 43 643 532 HOH HOH . S 7 HOH B 44 644 563 HOH HOH . S 7 HOH B 45 645 543 HOH HOH . S 7 HOH B 46 646 593 HOH HOH . S 7 HOH B 47 647 575 HOH HOH . S 7 HOH B 48 648 527 HOH HOH . S 7 HOH B 49 649 565 HOH HOH . S 7 HOH B 50 650 503 HOH HOH . S 7 HOH B 51 651 502 HOH HOH . S 7 HOH B 52 652 567 HOH HOH . S 7 HOH B 53 653 525 HOH HOH . S 7 HOH B 54 654 514 HOH HOH . S 7 HOH B 55 655 523 HOH HOH . S 7 HOH B 56 656 540 HOH HOH . S 7 HOH B 57 657 589 HOH HOH . S 7 HOH B 58 658 566 HOH HOH . S 7 HOH B 59 659 519 HOH HOH . S 7 HOH B 60 660 541 HOH HOH . S 7 HOH B 61 661 559 HOH HOH . S 7 HOH B 62 662 516 HOH HOH . S 7 HOH B 63 663 614 HOH HOH . S 7 HOH B 64 664 584 HOH HOH . S 7 HOH B 65 665 550 HOH HOH . S 7 HOH B 66 666 501 HOH HOH . S 7 HOH B 67 667 585 HOH HOH . S 7 HOH B 68 668 505 HOH HOH . S 7 HOH B 69 669 553 HOH HOH . S 7 HOH B 70 670 591 HOH HOH . S 7 HOH B 71 671 554 HOH HOH . S 7 HOH B 72 672 587 HOH HOH . S 7 HOH B 73 673 622 HOH HOH . S 7 HOH B 74 674 528 HOH HOH . S 7 HOH B 75 675 617 HOH HOH . S 7 HOH B 76 676 630 HOH HOH . S 7 HOH B 77 677 557 HOH HOH . S 7 HOH B 78 678 571 HOH HOH . S 7 HOH B 79 679 609 HOH HOH . S 7 HOH B 80 680 632 HOH HOH . S 7 HOH B 81 681 585 HOH HOH . S 7 HOH B 82 682 525 HOH HOH . S 7 HOH B 83 683 549 HOH HOH . S 7 HOH B 84 684 547 HOH HOH . S 7 HOH B 85 685 628 HOH HOH . S 7 HOH B 86 686 536 HOH HOH . S 7 HOH B 87 687 537 HOH HOH . S 7 HOH B 88 688 562 HOH HOH . S 7 HOH B 89 689 577 HOH HOH . S 7 HOH B 90 690 556 HOH HOH . S 7 HOH B 91 691 625 HOH HOH . S 7 HOH B 92 692 558 HOH HOH . S 7 HOH B 93 693 551 HOH HOH . S 7 HOH B 94 694 579 HOH HOH . S 7 HOH B 95 695 518 HOH HOH . S 7 HOH B 96 696 546 HOH HOH . S 7 HOH B 97 697 590 HOH HOH . S 7 HOH B 98 698 580 HOH HOH . S 7 HOH B 99 699 581 HOH HOH . S 7 HOH B 100 700 542 HOH HOH . S 7 HOH B 101 701 568 HOH HOH . S 7 HOH B 102 702 596 HOH HOH . S 7 HOH B 103 703 570 HOH HOH . S 7 HOH B 104 704 545 HOH HOH . S 7 HOH B 105 705 522 HOH HOH . S 7 HOH B 106 706 570 HOH HOH . S 7 HOH B 107 707 515 HOH HOH . S 7 HOH B 108 708 607 HOH HOH . S 7 HOH B 109 709 535 HOH HOH . S 7 HOH B 110 710 524 HOH HOH . S 7 HOH B 111 711 620 HOH HOH . S 7 HOH B 112 712 573 HOH HOH . S 7 HOH B 113 713 574 HOH HOH . S 7 HOH B 114 714 596 HOH HOH . S 7 HOH B 115 715 529 HOH HOH . S 7 HOH B 116 716 623 HOH HOH . S 7 HOH B 117 717 611 HOH HOH . S 7 HOH B 118 718 592 HOH HOH . S 7 HOH B 119 719 608 HOH HOH . S 7 HOH B 120 720 626 HOH HOH . S 7 HOH B 121 721 602 HOH HOH . S 7 HOH B 122 722 618 HOH HOH . S 7 HOH B 123 723 514 HOH HOH . S 7 HOH B 124 724 621 HOH HOH . S 7 HOH B 125 725 600 HOH HOH . S 7 HOH B 126 726 517 HOH HOH . S 7 HOH B 127 727 606 HOH HOH . S 7 HOH B 128 728 595 HOH HOH . S 7 HOH B 129 729 531 HOH HOH . S 7 HOH B 130 730 588 HOH HOH . S 7 HOH B 131 731 599 HOH HOH . S 7 HOH B 132 732 544 HOH HOH . S 7 HOH B 133 733 601 HOH HOH . S 7 HOH B 134 734 571 HOH HOH . S 7 HOH B 135 735 507 HOH HOH . S 7 HOH B 136 736 555 HOH HOH . S 7 HOH B 137 737 578 HOH HOH . S 7 HOH B 138 738 616 HOH HOH . S 7 HOH B 139 739 613 HOH HOH . S 7 HOH B 140 740 574 HOH HOH . S 7 HOH B 141 741 615 HOH HOH . S 7 HOH B 142 742 509 HOH HOH . S 7 HOH B 143 743 576 HOH HOH . T 7 HOH A 1 501 604 HOH HOH . T 7 HOH A 2 502 597 HOH HOH . T 7 HOH A 3 503 581 HOH HOH . T 7 HOH A 4 504 610 HOH HOH . T 7 HOH A 5 505 518 HOH HOH . T 7 HOH A 6 506 556 HOH HOH . T 7 HOH A 7 507 505 HOH HOH . T 7 HOH A 8 508 553 HOH HOH . T 7 HOH A 9 509 568 HOH HOH . T 7 HOH A 10 510 512 HOH HOH . T 7 HOH A 11 511 598 HOH HOH . T 7 HOH A 12 512 522 HOH HOH . T 7 HOH A 13 513 608 HOH HOH . T 7 HOH A 14 514 551 HOH HOH . T 7 HOH A 15 515 609 HOH HOH . T 7 HOH A 16 516 524 HOH HOH . T 7 HOH A 17 517 605 HOH HOH . T 7 HOH A 18 518 563 HOH HOH . T 7 HOH A 19 519 584 HOH HOH . T 7 HOH A 20 520 561 HOH HOH . T 7 HOH A 21 521 539 HOH HOH . T 7 HOH A 22 522 549 HOH HOH . T 7 HOH A 23 523 599 HOH HOH . T 7 HOH A 24 524 564 HOH HOH . T 7 HOH A 25 525 503 HOH HOH . T 7 HOH A 26 526 569 HOH HOH . T 7 HOH A 27 527 530 HOH HOH . T 7 HOH A 28 528 590 HOH HOH . T 7 HOH A 29 529 508 HOH HOH . T 7 HOH A 30 530 544 HOH HOH . T 7 HOH A 31 531 577 HOH HOH . T 7 HOH A 32 532 598 HOH HOH . T 7 HOH A 33 533 603 HOH HOH . T 7 HOH A 34 534 557 HOH HOH . T 7 HOH A 35 535 543 HOH HOH . T 7 HOH A 36 536 511 HOH HOH . T 7 HOH A 37 537 566 HOH HOH . T 7 HOH A 38 538 560 HOH HOH . T 7 HOH A 39 539 516 HOH HOH . T 7 HOH A 40 540 515 HOH HOH . T 7 HOH A 41 541 538 HOH HOH . T 7 HOH A 42 542 607 HOH HOH . T 7 HOH A 43 543 537 HOH HOH . T 7 HOH A 44 544 526 HOH HOH . T 7 HOH A 45 545 592 HOH HOH . T 7 HOH A 46 546 578 HOH HOH . T 7 HOH A 47 547 507 HOH HOH . T 7 HOH A 48 548 572 HOH HOH . T 7 HOH A 49 549 547 HOH HOH . T 7 HOH A 50 550 567 HOH HOH . T 7 HOH A 51 551 536 HOH HOH . T 7 HOH A 52 552 558 HOH HOH . T 7 HOH A 53 553 540 HOH HOH . T 7 HOH A 54 554 513 HOH HOH . T 7 HOH A 55 555 580 HOH HOH . T 7 HOH A 56 556 541 HOH HOH . T 7 HOH A 57 557 594 HOH HOH . T 7 HOH A 58 558 565 HOH HOH . T 7 HOH A 59 559 586 HOH HOH . T 7 HOH A 60 560 523 HOH HOH . T 7 HOH A 61 561 552 HOH HOH . T 7 HOH A 62 562 559 HOH HOH . T 7 HOH A 63 563 534 HOH HOH . T 7 HOH A 64 564 579 HOH HOH . T 7 HOH A 65 565 508 HOH HOH . T 7 HOH A 66 566 583 HOH HOH . T 7 HOH A 67 567 595 HOH HOH . T 7 HOH A 68 568 528 HOH HOH . T 7 HOH A 69 569 550 HOH HOH . T 7 HOH A 70 570 562 HOH HOH . T 7 HOH A 71 571 521 HOH HOH . T 7 HOH A 72 572 531 HOH HOH . T 7 HOH A 73 573 576 HOH HOH . T 7 HOH A 74 574 554 HOH HOH . T 7 HOH A 75 575 506 HOH HOH . T 7 HOH A 76 576 504 HOH HOH . T 7 HOH A 77 577 510 HOH HOH . T 7 HOH A 78 578 533 HOH HOH . T 7 HOH A 79 579 555 HOH HOH . T 7 HOH A 80 580 532 HOH HOH . T 7 HOH A 81 581 573 HOH HOH . T 7 HOH A 82 582 511 HOH HOH . T 7 HOH A 83 583 535 HOH HOH . T 7 HOH A 84 584 545 HOH HOH . T 7 HOH A 85 585 509 HOH HOH . T 7 HOH A 86 586 519 HOH HOH . T 7 HOH A 87 587 591 HOH HOH . T 7 HOH A 88 588 502 HOH HOH . T 7 HOH A 89 589 520 HOH HOH . T 7 HOH A 90 590 501 HOH HOH . T 7 HOH A 91 591 546 HOH HOH . T 7 HOH A 92 592 569 HOH HOH . T 7 HOH A 93 593 582 HOH HOH . T 7 HOH A 94 594 564 HOH HOH . T 7 HOH A 95 595 600 HOH HOH . T 7 HOH A 96 596 517 HOH HOH . T 7 HOH A 97 597 527 HOH HOH . T 7 HOH A 98 598 510 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.691 _atom_site.Cartn_y -1.122 _atom_site.Cartn_z 47.57 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #