data_8WRB
#
_model_server_result.job_id            T6T6ywLajwn8ZfobWT6ZDQ 
_model_server_result.datetime_utc      '2024-10-11 00:29:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wrb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":603}' 
#
_entry.id    8WRB 
#
_exptl.entry_id    8WRB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              436.52 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-2-oxidanyl-3-phosphonooxy-propyl] (Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WRB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WRB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 D SG CYS 159 E CYS 159 1_555 D SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 E SG CYS 180 R CYS 127 1_555 E SG CYS 257 R CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 G OG SER . R SER 602 1_555 H PAC UBL . R UBL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? 
#
_chem_comp.formula           'C21 H41 O7 P' 
_chem_comp.formula_weight    436.52 
_chem_comp.id                UBL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-2-oxidanyl-3-phosphonooxy-propyl] (Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA PAC UBL sing 433 n n 
CAL CAK UBL sing 434 n n 
CAL CAM UBL sing 435 n n 
OAB PAC UBL doub 436 n n 
OAE CAK UBL doub 437 n n 
CAK OAJ UBL sing 438 n n 
PAC OAF UBL sing 439 n n 
CAM CAN UBL sing 440 n n 
OAJ CAI UBL sing 441 n n 
OAF CAG UBL sing 442 n n 
CAI CAH UBL sing 443 n n 
CAH CAG UBL sing 444 n n 
CAH OBC UBL sing 445 n n 
CAN CAO UBL sing 446 n n 
CAO CAP UBL sing 447 n n 
CAP CAQ UBL sing 448 n n 
CAQ CAR UBL sing 449 n n 
CAR CAS UBL sing 450 n n 
CAS CAT UBL doub 451 z n 
CAT CAU UBL sing 452 n n 
CAU CAV UBL sing 453 n n 
CAV CAW UBL sing 454 n n 
CAW CAX UBL sing 455 n n 
CAX CAY UBL sing 456 n n 
CAY CAZ UBL sing 457 n n 
CAZ CBA UBL sing 458 n n 
CBA CBB UBL sing 459 n n 
OAA H1 UBL sing 460 n n 
CAG H3 UBL sing 461 n n 
CAG H4 UBL sing 462 n n 
CAH H5 UBL sing 463 n n 
CAI H6 UBL sing 464 n n 
CAI H7 UBL sing 465 n n 
CAL H8 UBL sing 466 n n 
CAL H9 UBL sing 467 n n 
CAM H10 UBL sing 468 n n 
CAM H11 UBL sing 469 n n 
CAN H12 UBL sing 470 n n 
CAN H13 UBL sing 471 n n 
CAO H14 UBL sing 472 n n 
CAO H15 UBL sing 473 n n 
CAP H16 UBL sing 474 n n 
CAP H17 UBL sing 475 n n 
CAQ H18 UBL sing 476 n n 
CAQ H19 UBL sing 477 n n 
CAR H20 UBL sing 478 n n 
CAR H21 UBL sing 479 n n 
CAS H22 UBL sing 480 n n 
CAT H24 UBL sing 481 n n 
CAU H26 UBL sing 482 n n 
CAU H27 UBL sing 483 n n 
CAV H28 UBL sing 484 n n 
CAV H29 UBL sing 485 n n 
CAW H30 UBL sing 486 n n 
CAW H31 UBL sing 487 n n 
CAX H32 UBL sing 488 n n 
CAX H33 UBL sing 489 n n 
CAY H34 UBL sing 490 n n 
CAY H35 UBL sing 491 n n 
CAZ H36 UBL sing 492 n n 
CAZ H37 UBL sing 493 n n 
CBA H38 UBL sing 494 n n 
CBA H39 UBL sing 495 n n 
CBB H40 UBL sing 496 n n 
CBB H41 UBL sing 497 n n 
CBB H42 UBL sing 498 n n 
OBC H43 UBL sing 499 n n 
PAC O1 UBL sing 500 n n 
O1 H2 UBL sing 501 n n 
#
_atom_sites.entry_id                     8WRB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 CLR R 1 601 501 CLR CLR . 
G 7 SER R 1 602 401 SER LIG . 
H 8 UBL R 1 603 401 UBL LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA UBL . . . H 8 115.381 114.791 138.8 1 99.23 ? OAA UBL 603 R 1 
HETATM 2 O OAB UBL . . . H 8 115.549 112.713 137.474 1 95.86 ? OAB UBL 603 R 1 
HETATM 3 P PAC UBL . . . H 8 114.691 113.494 138.447 1 112.18 ? PAC UBL 603 R 1 
HETATM 4 O OAE UBL . . . H 8 107.778 115.403 135.108 1 93.96 ? OAE UBL 603 R 1 
HETATM 5 O OAF UBL . . . H 8 113.213 113.817 137.745 1 96.49 ? OAF UBL 603 R 1 
HETATM 6 C CAG UBL . . . H 8 112.971 115.123 137.249 1 91.67 ? CAG UBL 603 R 1 
HETATM 7 C CAH UBL . . . H 8 111.93 115.015 136.1 1 95.48 ? CAH UBL 603 R 1 
HETATM 8 C CAI UBL . . . H 8 110.468 115.17 136.598 1 93.52 ? CAI UBL 603 R 1 
HETATM 9 O OAJ UBL . . . H 8 109.637 114.334 135.81 1 94.67 ? OAJ UBL 603 R 1 
HETATM 10 C CAK UBL . . . H 8 108.876 115.034 134.845 1 93.73 ? CAK UBL 603 R 1 
HETATM 11 C CAL UBL . . . H 8 109.476 115.328 133.45 1 93.32 ? CAL UBL 603 R 1 
HETATM 12 C CAM UBL . . . H 8 108.38 115.493 132.367 1 87.46 ? CAM UBL 603 R 1 
HETATM 13 C CAN UBL . . . H 8 108.966 115.535 130.927 1 87.63 ? CAN UBL 603 R 1 
HETATM 14 C CAO UBL . . . H 8 108.118 114.679 129.939 1 88.47 ? CAO UBL 603 R 1 
HETATM 15 C CAP UBL . . . H 8 107.799 115.444 128.621 1 84.87 ? CAP UBL 603 R 1 
HETATM 16 C CAQ UBL . . . H 8 107.254 114.497 127.512 1 86.47 ? CAQ UBL 603 R 1 
HETATM 17 C CAR UBL . . . H 8 105.71 114.373 127.594 1 90.71 ? CAR UBL 603 R 1 
HETATM 18 C CAS UBL . . . H 8 105.002 114.726 126.252 1 90.12 ? CAS UBL 603 R 1 
HETATM 19 C CAT UBL . . . H 8 104.073 115.391 125.547 1 91.8 ? CAT UBL 603 R 1 
HETATM 20 C CAU UBL . . . H 8 103.232 116.322 126.465 1 94.1 ? CAU UBL 603 R 1 
HETATM 21 C CAV UBL . . . H 8 101.787 116.547 125.929 1 91.43 ? CAV UBL 603 R 1 
HETATM 22 C CAW UBL . . . H 8 100.853 117.167 127.016 1 96.11 ? CAW UBL 603 R 1 
HETATM 23 C CAX UBL . . . H 8 99.383 117.305 126.517 1 95.16 ? CAX UBL 603 R 1 
HETATM 24 C CAY UBL . . . H 8 98.349 116.981 127.64 1 95.86 ? CAY UBL 603 R 1 
HETATM 25 C CAZ UBL . . . H 8 96.881 117.234 127.18 1 97.18 ? CAZ UBL 603 R 1 
HETATM 26 C CBA UBL . . . H 8 95.887 116.206 127.792 1 92.27 ? CBA UBL 603 R 1 
HETATM 27 C CBB UBL . . . H 8 94.423 116.488 127.371 1 89.87 ? CBB UBL 603 R 1 
HETATM 28 O OBC UBL . . . H 8 112.191 116.056 135.181 1 92.54 ? OBC UBL 603 R 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           28 
#