data_8WRJ # _model_server_result.job_id LtmsCDMhYXjw9ZI3qbLl2A _model_server_result.datetime_utc '2024-11-25 12:39:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wrj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8WRJ # _exptl.entry_id 8WRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(1R,2S,4R,6R,7R,10S,11S,14S,16R)-14-hydroxy-7,11-dimethyl-3-oxapentacyclo[8.8.0.02,4.02,7.011,16]octadecan-6-yl]pyran-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WRJ _cell.length_a 46.022 _cell.length_b 53.005 _cell.length_c 200.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 O4' _chem_comp.formula_weight 384.508 _chem_comp.id 6JI _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(1R,2S,4R,6R,7R,10S,11S,14S,16R)-14-hydroxy-7,11-dimethyl-3-oxapentacyclo[8.8.0.02,4.02,7.011,16]octadecan-6-yl]pyran-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Resibufogenin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 6JI sing 1 n n C9 C10 6JI sing 2 n n C8 C7 6JI sing 3 n n O1 C5 6JI sing 4 n n C7 C6 6JI sing 5 n n C7 C2 6JI sing 6 n n C6 C5 6JI sing 7 n n O4 C23 6JI sing 8 n n O4 C24 6JI sing 9 n n C5 C4 6JI sing 10 n n C10 C24 6JI sing 11 n n C10 C11 6JI sing 12 n n C23 C24 6JI sing 13 n n C23 C22 6JI sing 14 n n C1 C2 6JI sing 15 n n C24 C14 6JI sing 16 n n C2 C11 6JI sing 17 n n C2 C3 6JI sing 18 n n C11 C12 6JI sing 19 n n C15 C14 6JI sing 20 n n C4 C3 6JI sing 21 n n C22 C16 6JI sing 22 n n C18 C19 6JI doub 23 n n C18 C17 6JI sing 24 n n C14 C16 6JI sing 25 n n C14 C13 6JI sing 26 n n C19 C20 6JI sing 27 n n C16 C17 6JI sing 28 n n C12 C13 6JI sing 29 n n C17 C21 6JI doub 30 n n C20 O2 6JI doub 31 n n C20 O3 6JI sing 32 n n C21 O3 6JI sing 33 n n C4 H1 6JI sing 34 n n C4 H2 6JI sing 35 n n C3 H3 6JI sing 36 n n C3 H4 6JI sing 37 n n C1 H5 6JI sing 38 n n C1 H6 6JI sing 39 n n C1 H7 6JI sing 40 n n O1 H8 6JI sing 41 n n C10 H9 6JI sing 42 n n C11 H10 6JI sing 43 n n C12 H11 6JI sing 44 n n C12 H12 6JI sing 45 n n C13 H13 6JI sing 46 n n C13 H14 6JI sing 47 n n C15 H15 6JI sing 48 n n C15 H16 6JI sing 49 n n C15 H17 6JI sing 50 n n C16 H18 6JI sing 51 n n C18 H19 6JI sing 52 n n C19 H20 6JI sing 53 n n C21 H21 6JI sing 54 n n C22 H22 6JI sing 55 n n C22 H23 6JI sing 56 n n C23 H24 6JI sing 57 n n C5 H25 6JI sing 58 n n C6 H26 6JI sing 59 n n C6 H27 6JI sing 60 n n C7 H28 6JI sing 61 n n C8 H29 6JI sing 62 n n C8 H30 6JI sing 63 n n C9 H31 6JI sing 64 n n C9 H32 6JI sing 65 n n # _atom_sites.entry_id 8WRJ _atom_sites.fract_transf_matrix[1][1] 0.021729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6JI A 1 501 501 6JI DRG . C 3 UDP A 1 502 502 UDP UDP . D 4 HOH A 1 601 258 HOH HOH . D 4 HOH A 2 602 251 HOH HOH . D 4 HOH A 3 603 110 HOH HOH . D 4 HOH A 4 604 273 HOH HOH . D 4 HOH A 5 605 55 HOH HOH . D 4 HOH A 6 606 144 HOH HOH . D 4 HOH A 7 607 180 HOH HOH . D 4 HOH A 8 608 203 HOH HOH . D 4 HOH A 9 609 88 HOH HOH . D 4 HOH A 10 610 50 HOH HOH . D 4 HOH A 11 611 240 HOH HOH . D 4 HOH A 12 612 147 HOH HOH . D 4 HOH A 13 613 84 HOH HOH . D 4 HOH A 14 614 161 HOH HOH . D 4 HOH A 15 615 243 HOH HOH . D 4 HOH A 16 616 248 HOH HOH . D 4 HOH A 17 617 260 HOH HOH . D 4 HOH A 18 618 225 HOH HOH . D 4 HOH A 19 619 35 HOH HOH . D 4 HOH A 20 620 21 HOH HOH . D 4 HOH A 21 621 269 HOH HOH . D 4 HOH A 22 622 166 HOH HOH . D 4 HOH A 23 623 18 HOH HOH . D 4 HOH A 24 624 164 HOH HOH . D 4 HOH A 25 625 62 HOH HOH . D 4 HOH A 26 626 33 HOH HOH . D 4 HOH A 27 627 25 HOH HOH . D 4 HOH A 28 628 249 HOH HOH . D 4 HOH A 29 629 7 HOH HOH . D 4 HOH A 30 630 72 HOH HOH . D 4 HOH A 31 631 40 HOH HOH . D 4 HOH A 32 632 61 HOH HOH . D 4 HOH A 33 633 8 HOH HOH . D 4 HOH A 34 634 270 HOH HOH . D 4 HOH A 35 635 26 HOH HOH . D 4 HOH A 36 636 175 HOH HOH . D 4 HOH A 37 637 67 HOH HOH . D 4 HOH A 38 638 42 HOH HOH . D 4 HOH A 39 639 38 HOH HOH . D 4 HOH A 40 640 242 HOH HOH . D 4 HOH A 41 641 3 HOH HOH . D 4 HOH A 42 642 108 HOH HOH . D 4 HOH A 43 643 202 HOH HOH . D 4 HOH A 44 644 153 HOH HOH . D 4 HOH A 45 645 86 HOH HOH . D 4 HOH A 46 646 22 HOH HOH . D 4 HOH A 47 647 58 HOH HOH . D 4 HOH A 48 648 1 HOH HOH . D 4 HOH A 49 649 16 HOH HOH . D 4 HOH A 50 650 2 HOH HOH . D 4 HOH A 51 651 105 HOH HOH . D 4 HOH A 52 652 77 HOH HOH . D 4 HOH A 53 653 5 HOH HOH . D 4 HOH A 54 654 12 HOH HOH . D 4 HOH A 55 655 4 HOH HOH . D 4 HOH A 56 656 43 HOH HOH . D 4 HOH A 57 657 190 HOH HOH . D 4 HOH A 58 658 17 HOH HOH . D 4 HOH A 59 659 15 HOH HOH . D 4 HOH A 60 660 37 HOH HOH . D 4 HOH A 61 661 101 HOH HOH . D 4 HOH A 62 662 106 HOH HOH . D 4 HOH A 63 663 135 HOH HOH . D 4 HOH A 64 664 184 HOH HOH . D 4 HOH A 65 665 63 HOH HOH . D 4 HOH A 66 666 160 HOH HOH . D 4 HOH A 67 667 277 HOH HOH . D 4 HOH A 68 668 157 HOH HOH . D 4 HOH A 69 669 98 HOH HOH . D 4 HOH A 70 670 47 HOH HOH . D 4 HOH A 71 671 253 HOH HOH . D 4 HOH A 72 672 6 HOH HOH . D 4 HOH A 73 673 99 HOH HOH . D 4 HOH A 74 674 46 HOH HOH . D 4 HOH A 75 675 213 HOH HOH . D 4 HOH A 76 676 10 HOH HOH . D 4 HOH A 77 677 20 HOH HOH . D 4 HOH A 78 678 57 HOH HOH . D 4 HOH A 79 679 65 HOH HOH . D 4 HOH A 80 680 283 HOH HOH . D 4 HOH A 81 681 178 HOH HOH . D 4 HOH A 82 682 177 HOH HOH . D 4 HOH A 83 683 11 HOH HOH . D 4 HOH A 84 684 9 HOH HOH . D 4 HOH A 85 685 49 HOH HOH . D 4 HOH A 86 686 133 HOH HOH . D 4 HOH A 87 687 259 HOH HOH . D 4 HOH A 88 688 252 HOH HOH . D 4 HOH A 89 689 97 HOH HOH . D 4 HOH A 90 690 109 HOH HOH . D 4 HOH A 91 691 179 HOH HOH . D 4 HOH A 92 692 200 HOH HOH . D 4 HOH A 93 693 79 HOH HOH . D 4 HOH A 94 694 186 HOH HOH . D 4 HOH A 95 695 73 HOH HOH . D 4 HOH A 96 696 14 HOH HOH . D 4 HOH A 97 697 216 HOH HOH . D 4 HOH A 98 698 192 HOH HOH . D 4 HOH A 99 699 132 HOH HOH . D 4 HOH A 100 700 126 HOH HOH . D 4 HOH A 101 701 118 HOH HOH . D 4 HOH A 102 702 28 HOH HOH . D 4 HOH A 103 703 71 HOH HOH . D 4 HOH A 104 704 139 HOH HOH . D 4 HOH A 105 705 69 HOH HOH . D 4 HOH A 106 706 103 HOH HOH . D 4 HOH A 107 707 140 HOH HOH . D 4 HOH A 108 708 92 HOH HOH . D 4 HOH A 109 709 155 HOH HOH . D 4 HOH A 110 710 36 HOH HOH . D 4 HOH A 111 711 100 HOH HOH . D 4 HOH A 112 712 60 HOH HOH . D 4 HOH A 113 713 81 HOH HOH . D 4 HOH A 114 714 87 HOH HOH . D 4 HOH A 115 715 32 HOH HOH . D 4 HOH A 116 716 163 HOH HOH . D 4 HOH A 117 717 169 HOH HOH . D 4 HOH A 118 718 34 HOH HOH . D 4 HOH A 119 719 171 HOH HOH . D 4 HOH A 120 720 59 HOH HOH . D 4 HOH A 121 721 262 HOH HOH . D 4 HOH A 122 722 104 HOH HOH . D 4 HOH A 123 723 255 HOH HOH . D 4 HOH A 124 724 173 HOH HOH . D 4 HOH A 125 725 261 HOH HOH . D 4 HOH A 126 726 215 HOH HOH . D 4 HOH A 127 727 198 HOH HOH . D 4 HOH A 128 728 183 HOH HOH . D 4 HOH A 129 729 113 HOH HOH . D 4 HOH A 130 730 122 HOH HOH . D 4 HOH A 131 731 80 HOH HOH . D 4 HOH A 132 732 124 HOH HOH . D 4 HOH A 133 733 13 HOH HOH . D 4 HOH A 134 734 95 HOH HOH . D 4 HOH A 135 735 210 HOH HOH . D 4 HOH A 136 736 146 HOH HOH . D 4 HOH A 137 737 123 HOH HOH . D 4 HOH A 138 738 193 HOH HOH . D 4 HOH A 139 739 187 HOH HOH . D 4 HOH A 140 740 48 HOH HOH . D 4 HOH A 141 741 39 HOH HOH . D 4 HOH A 142 742 44 HOH HOH . D 4 HOH A 143 743 285 HOH HOH . D 4 HOH A 144 744 137 HOH HOH . D 4 HOH A 145 745 93 HOH HOH . D 4 HOH A 146 746 167 HOH HOH . D 4 HOH A 147 747 89 HOH HOH . D 4 HOH A 148 748 282 HOH HOH . D 4 HOH A 149 749 226 HOH HOH . D 4 HOH A 150 750 75 HOH HOH . D 4 HOH A 151 751 191 HOH HOH . D 4 HOH A 152 752 127 HOH HOH . D 4 HOH A 153 753 74 HOH HOH . D 4 HOH A 154 754 130 HOH HOH . D 4 HOH A 155 755 141 HOH HOH . D 4 HOH A 156 756 145 HOH HOH . D 4 HOH A 157 757 151 HOH HOH . D 4 HOH A 158 758 56 HOH HOH . D 4 HOH A 159 759 235 HOH HOH . D 4 HOH A 160 760 159 HOH HOH . D 4 HOH A 161 761 209 HOH HOH . D 4 HOH A 162 762 120 HOH HOH . D 4 HOH A 163 763 220 HOH HOH . D 4 HOH A 164 764 170 HOH HOH . D 4 HOH A 165 765 125 HOH HOH . D 4 HOH A 166 766 23 HOH HOH . D 4 HOH A 167 767 284 HOH HOH . D 4 HOH A 168 768 268 HOH HOH . D 4 HOH A 169 769 272 HOH HOH . D 4 HOH A 170 770 278 HOH HOH . D 4 HOH A 171 771 254 HOH HOH . D 4 HOH A 172 772 158 HOH HOH . D 4 HOH A 173 773 154 HOH HOH . D 4 HOH A 174 774 143 HOH HOH . D 4 HOH A 175 775 197 HOH HOH . D 4 HOH A 176 776 107 HOH HOH . D 4 HOH A 177 777 222 HOH HOH . D 4 HOH A 178 778 239 HOH HOH . D 4 HOH A 179 779 241 HOH HOH . D 4 HOH A 180 780 246 HOH HOH . D 4 HOH A 181 781 199 HOH HOH . D 4 HOH A 182 782 70 HOH HOH . D 4 HOH A 183 783 83 HOH HOH . D 4 HOH A 184 784 205 HOH HOH . D 4 HOH A 185 785 31 HOH HOH . D 4 HOH A 186 786 276 HOH HOH . D 4 HOH A 187 787 230 HOH HOH . D 4 HOH A 188 788 218 HOH HOH . D 4 HOH A 189 789 182 HOH HOH . D 4 HOH A 190 790 206 HOH HOH . D 4 HOH A 191 791 217 HOH HOH . D 4 HOH A 192 792 85 HOH HOH . D 4 HOH A 193 793 264 HOH HOH . D 4 HOH A 194 794 219 HOH HOH . D 4 HOH A 195 795 168 HOH HOH . D 4 HOH A 196 796 227 HOH HOH . D 4 HOH A 197 797 142 HOH HOH . D 4 HOH A 198 798 245 HOH HOH . D 4 HOH A 199 799 281 HOH HOH . D 4 HOH A 200 800 82 HOH HOH . D 4 HOH A 201 801 201 HOH HOH . D 4 HOH A 202 802 149 HOH HOH . D 4 HOH A 203 803 232 HOH HOH . D 4 HOH A 204 804 238 HOH HOH . D 4 HOH A 205 805 257 HOH HOH . D 4 HOH A 206 806 280 HOH HOH . D 4 HOH A 207 807 115 HOH HOH . D 4 HOH A 208 808 138 HOH HOH . D 4 HOH A 209 809 189 HOH HOH . D 4 HOH A 210 810 94 HOH HOH . D 4 HOH A 211 811 275 HOH HOH . D 4 HOH A 212 812 271 HOH HOH . D 4 HOH A 213 813 224 HOH HOH . D 4 HOH A 214 814 24 HOH HOH . D 4 HOH A 215 815 279 HOH HOH . D 4 HOH A 216 816 76 HOH HOH . D 4 HOH A 217 817 266 HOH HOH . D 4 HOH A 218 818 223 HOH HOH . D 4 HOH A 219 819 185 HOH HOH . D 4 HOH A 220 820 131 HOH HOH . D 4 HOH A 221 821 181 HOH HOH . D 4 HOH A 222 822 207 HOH HOH . D 4 HOH A 223 823 234 HOH HOH . D 4 HOH A 224 824 247 HOH HOH . D 4 HOH A 225 825 263 HOH HOH . D 4 HOH A 226 826 196 HOH HOH . D 4 HOH A 227 827 174 HOH HOH . D 4 HOH A 228 828 267 HOH HOH . D 4 HOH A 229 829 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 6JI . . . B 2 -9.115 29.505 66.763 1 38.47 ? O4 6JI 501 A 1 HETATM 2 C C4 6JI . . . B 2 -8.291 34.651 71.964 1 43.42 ? C4 6JI 501 A 1 HETATM 3 C C3 6JI . . . B 2 -9.413 33.817 71.357 1 35.48 ? C3 6JI 501 A 1 HETATM 4 O O3 6JI . . . B 2 -13.704 26.464 66.178 1 34.81 ? O3 6JI 501 A 1 HETATM 5 C C2 6JI . . . B 2 -9.216 33.486 69.862 1 37.79 ? C2 6JI 501 A 1 HETATM 6 O O2 6JI . . . B 2 -14.024 26.109 64.053 1 32.01 ? O2 6JI 501 A 1 HETATM 7 C C1 6JI . . . B 2 -10.162 34.372 69.029 1 39.51 ? C1 6JI 501 A 1 HETATM 8 O O1 6JI . . . B 2 -5.919 34.9 72.133 1 43.36 ? O1 6JI 501 A 1 HETATM 9 C C10 6JI . . . B 2 -9.172 31.53 68.197 1 35.31 ? C10 6JI 501 A 1 HETATM 10 C C11 6JI . . . B 2 -9.506 31.972 69.638 1 38.6 ? C11 6JI 501 A 1 HETATM 11 C C12 6JI . . . B 2 -10.927 31.552 70.047 1 36.68 ? C12 6JI 501 A 1 HETATM 12 C C13 6JI . . . B 2 -11.18 30.047 69.862 1 36.82 ? C13 6JI 501 A 1 HETATM 13 C C14 6JI . . . B 2 -10.94 29.608 68.408 1 37.05 ? C14 6JI 501 A 1 HETATM 14 C C15 6JI . . . B 2 -11.964 30.24 67.456 1 32.69 ? C15 6JI 501 A 1 HETATM 15 C C16 6JI . . . B 2 -10.893 28.044 68.195 1 36.76 ? C16 6JI 501 A 1 HETATM 16 C C17 6JI . . . B 2 -11.683 27.52 67.015 1 35.6 ? C17 6JI 501 A 1 HETATM 17 C C18 6JI . . . B 2 -11.219 27.612 65.707 1 34.81 ? C18 6JI 501 A 1 HETATM 18 C C19 6JI . . . B 2 -11.985 27.162 64.641 1 33.56 ? C19 6JI 501 A 1 HETATM 19 C C20 6JI . . . B 2 -13.269 26.563 64.878 1 32.01 ? C20 6JI 501 A 1 HETATM 20 C C21 6JI . . . B 2 -12.947 26.935 67.225 1 35.09 ? C21 6JI 501 A 1 HETATM 21 C C22 6JI . . . B 2 -9.404 27.651 68.292 1 38.2 ? C22 6JI 501 A 1 HETATM 22 C C23 6JI . . . B 2 -8.635 28.911 67.986 1 35.65 ? C23 6JI 501 A 1 HETATM 23 C C24 6JI . . . B 2 -9.53 30.065 68.048 1 36.52 ? C24 6JI 501 A 1 HETATM 24 C C5 6JI . . . B 2 -6.96 33.932 71.904 1 41.07 ? C5 6JI 501 A 1 HETATM 25 C C6 6JI . . . B 2 -6.762 33.27 70.549 1 37.31 ? C6 6JI 501 A 1 HETATM 26 C C7 6JI . . . B 2 -7.737 33.781 69.487 1 35.93 ? C7 6JI 501 A 1 HETATM 27 C C8 6JI . . . B 2 -7.37 33.29 68.083 1 38.7 ? C8 6JI 501 A 1 HETATM 28 C C9 6JI . . . B 2 -7.697 31.811 67.896 1 37.65 ? C9 6JI 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #