data_8WSA
#
_model_server_result.job_id            u97zXgvo2NUlILAr1IvooQ 
_model_server_result.datetime_utc      '2024-11-05 08:23:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wsa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":204}' 
#
_entry.id    8WSA 
#
_exptl.entry_id    8WSA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              454.726 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3R)-3-(tetradecanoyloxy)tetradecanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WSA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WSA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 C CYS 25 1_555 A SG CYS 33 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 19 C CYS 37 1_555 A SG CYS 130 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
disulf ? disulf3 A SG CYS 77 C CYS 95 1_555 A SG CYS 87 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 B SG CYS 3 A CYS 28 1_555 B SG CYS 14 A CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 B SG CYS 255 A CYS 280 1_555 B SG CYS 279 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 363 A CYS 388 1_555 B SG CYS 364 A CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 B SG CYS 555 A CYS 580 1_555 B SG CYS 581 A CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 C SG CYS 7 D CYS 25 1_555 C SG CYS 33 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 C SG CYS 19 D CYS 37 1_555 C SG CYS 130 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
disulf ? disulf10 C SG CYS 77 D CYS 95 1_555 C SG CYS 87 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf11 D SG CYS 3 B CYS 28 1_555 D SG CYS 14 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 D SG CYS 255 B CYS 280 1_555 D SG CYS 279 B CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf13 D SG CYS 363 B CYS 388 1_555 D SG CYS 364 B CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 D SG CYS 555 B CYS 580 1_555 D SG CYS 581 B CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A ND2 ASN 96 C ASN 114 1_555 F C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale2 A ND2 ASN 132 C ASN 150 1_555 E C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale3 G C1 2IL . C 2IL 203 1_555 P N2 GP4 . A GP4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 ? 
covale ? covale4 H O3E 0IL . C 0IL 204 1_555 P C3 GP4 . A GP4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale5 I C6 X6N . C X6N 205 1_555 J O52 A1L01 . C A1L01 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale6 I OXT X6N . C X6N 205 1_555 P C1 GP4 . A GP4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale7 B ND2 ASN 179 A ASN 204 1_555 M C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 B ND2 ASN 212 A ASN 237 1_555 N C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale9 B ND2 ASN 499 A ASN 524 1_555 K C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale10 B ND2 ASN 547 A ASN 572 1_555 O C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale11 Q O52 A1L01 . A A1L01 707 1_555 V C6 X6N . D X6N 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale12 C ND2 ASN 96 D ASN 114 1_555 S C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale13 C ND2 ASN 132 D ASN 150 1_555 R C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale14 T C1 2IL . D 2IL 203 1_555 BA N2 GP4 . B GP4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.288 ? 
covale ? covale15 U O3E 0IL . D 0IL 204 1_555 BA C3 GP4 . B GP4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale16 V OXT X6N . D X6N 205 1_555 BA C1 GP4 . B GP4 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale17 D ND2 ASN 179 B ASN 204 1_555 Y C1 NAG . B NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale18 D ND2 ASN 212 B ASN 237 1_555 Z C1 NAG . B NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale19 D ND2 ASN 499 B ASN 524 1_555 W C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale20 D ND2 ASN 547 B ASN 572 1_555 AA C1 NAG . B NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C28 H54 O4' 
_chem_comp.formula_weight    454.726 
_chem_comp.id                0IL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3R)-3-(tetradecanoyloxy)tetradecanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1S C0S 0IL sing 1 n n 
C0S C9E 0IL sing 2 n n 
C0S H0S 0IL sing 3 n n 
C0S H0SA 0IL sing 4 n n 
C1T C0T 0IL sing 5 n n 
C0T C9F 0IL sing 6 n n 
C0T H0T 0IL sing 7 n n 
C0T H0TA 0IL sing 8 n n 
C2E C1E 0IL sing 9 n n 
C1E O1E 0IL doub 10 n n 
C1E O3E 0IL sing 11 n n 
O1F C1F 0IL doub 12 n n 
C1F C2F 0IL sing 13 n n 
C1F O2E 0IL sing 14 n n 
C2S C1S 0IL sing 15 n n 
C1S H1S 0IL sing 16 n n 
C1S H1SA 0IL sing 17 n n 
C2T C1T 0IL sing 18 n n 
C1T H1T 0IL sing 19 n n 
C1T H1TA 0IL sing 20 n n 
C28 C3T 0IL sing 21 n n 
C28 H28 0IL sing 22 n n 
C28 H28A 0IL sing 23 n n 
C28 H28B 0IL sing 24 n n 
C3E C2E 0IL sing 25 n n 
C2E H2E 0IL sing 26 n n 
C2E H2EA 0IL sing 27 n n 
O2E C3E 0IL sing 28 n n 
C3F C2F 0IL sing 29 n n 
C2F H2F 0IL sing 30 n n 
C2F H2FA 0IL sing 31 n n 
C3S C2S 0IL sing 32 n n 
C2S H2S 0IL sing 33 n n 
C2S H2SA 0IL sing 34 n n 
C3T C2T 0IL sing 35 n n 
C2T H2T 0IL sing 36 n n 
C2T H2TA 0IL sing 37 n n 
C3E C4E 0IL sing 38 n n 
C3E H3E 0IL sing 39 n n 
O3E HO3E 0IL sing 40 n n 
C4F C3F 0IL sing 41 n n 
C3F H3F 0IL sing 42 n n 
C3F H3FA 0IL sing 43 n n 
C4S C3S 0IL sing 44 n n 
C3S H3S 0IL sing 45 n n 
C3S H3SA 0IL sing 46 n n 
C3T H3T 0IL sing 47 n n 
C3T H3TA 0IL sing 48 n n 
C5E C4E 0IL sing 49 n n 
C4E H4E 0IL sing 50 n n 
C4E H4EA 0IL sing 51 n n 
C5F C4F 0IL sing 52 n n 
C4F H4F 0IL sing 53 n n 
C4F H4FA 0IL sing 54 n n 
C4S H4S 0IL sing 55 n n 
C4S H4SA 0IL sing 56 n n 
C4S H4SB 0IL sing 57 n n 
C5E C6E 0IL sing 58 n n 
C5E H5E 0IL sing 59 n n 
C5E H5EA 0IL sing 60 n n 
C6F C5F 0IL sing 61 n n 
C5F H5F 0IL sing 62 n n 
C5F H5FA 0IL sing 63 n n 
C7E C6E 0IL sing 64 n n 
C6E H6E 0IL sing 65 n n 
C6E H6EA 0IL sing 66 n n 
C7F C6F 0IL sing 67 n n 
C6F H6F 0IL sing 68 n n 
C6F H6FA 0IL sing 69 n n 
C8E C7E 0IL sing 70 n n 
C7E H7E 0IL sing 71 n n 
C7E H7EA 0IL sing 72 n n 
C8F C7F 0IL sing 73 n n 
C7F H7F 0IL sing 74 n n 
C7F H7FA 0IL sing 75 n n 
C9E C8E 0IL sing 76 n n 
C8E H8E 0IL sing 77 n n 
C8E H8EA 0IL sing 78 n n 
C9F C8F 0IL sing 79 n n 
C8F H8F 0IL sing 80 n n 
C8F H8FA 0IL sing 81 n n 
C9E H9E 0IL sing 82 n n 
C9E H9EA 0IL sing 83 n n 
C9F H9F 0IL sing 84 n n 
C9F H9FA 0IL sing 85 n n 
#
_atom_sites.entry_id                     8WSA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG C 1 201 302 NAG NAG . 
F 3 NAG C 1 202 303 NAG NAG . 
G 4 2IL C 1 203 1 2IL LM5 . 
H 5 0IL C 1 204 1 0IL LM5 . 
I 6 X6N C 1 205 1 X6N LM5 . 
J 7 A1L01 C 1 206 1 A1L01 LM5 . 
K 3 NAG A 1 701 621 NAG NAG . 
L 3 NAG A 1 702 626 NAG NAG . 
M 3 NAG A 1 703 629 NAG NAG . 
N 3 NAG A 1 704 630 NAG NAG . 
O 3 NAG A 1 705 631 NAG NAG . 
P 8 GP4 A 1 706 1 GP4 LM5 . 
Q 7 A1L01 A 1 707 2 A1L01 LM5 . 
R 3 NAG D 1 201 302 NAG NAG . 
S 3 NAG D 1 202 303 NAG NAG . 
T 4 2IL D 1 203 2 2IL LM5 . 
U 5 0IL D 1 204 2 0IL LM5 . 
V 6 X6N D 1 205 2 X6N LM5 . 
W 3 NAG B 1 701 621 NAG NAG . 
X 3 NAG B 1 702 626 NAG NAG . 
Y 3 NAG B 1 703 629 NAG NAG . 
Z 3 NAG B 1 704 630 NAG NAG . 
AA 3 NAG B 1 705 631 NAG NAG . 
BA 8 GP4 B 1 706 2 GP4 LM5 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C0S 0IL . . . U 5 202.779 161.074 171.987 1 97.65 ? C0S 0IL 204 D 1 
HETATM 2 C C0T 0IL . . . U 5 207.984 162.974 174.008 1 97.65 ? C0T 0IL 204 D 1 
HETATM 3 C C1E 0IL . . . U 5 195.617 167.047 177.012 1 97.65 ? C1E 0IL 204 D 1 
HETATM 4 O O1E 0IL . . . U 5 194.994 167.473 175.797 1 97.65 ? O1E 0IL 204 D 1 
HETATM 5 C C1F 0IL . . . U 5 198.953 164.173 178.259 1 97.65 ? C1F 0IL 204 D 1 
HETATM 6 O O1F 0IL . . . U 5 197.941 163.188 178.068 1 97.65 ? O1F 0IL 204 D 1 
HETATM 7 C C1S 0IL . . . U 5 203.011 160.309 170.684 1 97.65 ? C1S 0IL 204 D 1 
HETATM 8 C C1T 0IL . . . U 5 209.48 162.694 174.194 1 97.65 ? C1T 0IL 204 D 1 
HETATM 9 C C28 0IL . . . U 5 211.764 162.656 176.099 1 97.65 ? C28 0IL 204 D 1 
HETATM 10 C C2E 0IL . . . U 5 197.136 167.035 177.133 1 97.65 ? C2E 0IL 204 D 1 
HETATM 11 O O2E 0IL . . . U 5 198.891 165.378 177.497 1 97.65 ? O2E 0IL 204 D 1 
HETATM 12 C C2F 0IL . . . U 5 200.066 163.916 179.276 1 97.65 ? C2F 0IL 204 D 1 
HETATM 13 C C2S 0IL . . . U 5 202.769 158.815 170.903 1 97.65 ? C2S 0IL 204 D 1 
HETATM 14 C C2T 0IL . . . U 5 210.205 163.978 174.613 1 97.65 ? C2T 0IL 204 D 1 
HETATM 15 C C3E 0IL . . . U 5 197.668 165.645 176.809 1 97.65 ? C3E 0IL 204 D 1 
HETATM 16 O O3E 0IL . . . U 5 194.878 166.613 178.147 1 97.65 ? O3E 0IL 204 D 1 
HETATM 17 C C3F 0IL . . . U 5 200.867 162.68 178.845 1 97.65 ? C3F 0IL 204 D 1 
HETATM 18 C C3S 0IL . . . U 5 201.482 158.401 170.188 1 97.65 ? C3S 0IL 204 D 1 
HETATM 19 C C3T 0IL . . . U 5 211.668 163.675 174.957 1 97.65 ? C3T 0IL 204 D 1 
HETATM 20 C C4E 0IL . . . U 5 197.952 165.595 175.314 1 97.65 ? C4E 0IL 204 D 1 
HETATM 21 C C4F 0IL . . . U 5 202.167 163.132 178.169 1 97.65 ? C4F 0IL 204 D 1 
HETATM 22 C C4S 0IL . . . U 5 201.749 157.163 169.336 1 97.65 ? C4S 0IL 204 D 1 
HETATM 23 C C5E 0IL . . . U 5 198.239 164.159 174.865 1 97.65 ? C5E 0IL 204 D 1 
HETATM 24 C C5F 0IL . . . U 5 203.002 161.934 177.703 1 97.65 ? C5F 0IL 204 D 1 
HETATM 25 C C6E 0IL . . . U 5 199.617 164.097 174.205 1 97.65 ? C6E 0IL 204 D 1 
HETATM 26 C C6F 0IL . . . U 5 203.647 162.294 176.36 1 97.65 ? C6F 0IL 204 D 1 
HETATM 27 C C7E 0IL . . . U 5 199.847 162.681 173.675 1 97.65 ? C7E 0IL 204 D 1 
HETATM 28 C C7F 0IL . . . U 5 205.087 161.779 176.245 1 97.65 ? C7F 0IL 204 D 1 
HETATM 29 C C8E 0IL . . . U 5 201.018 162.704 172.695 1 97.65 ? C8E 0IL 204 D 1 
HETATM 30 C C8F 0IL . . . U 5 205.794 162.568 175.136 1 97.65 ? C8F 0IL 204 D 1 
HETATM 31 C C9E 0IL . . . U 5 201.281 161.275 172.217 1 97.65 ? C9E 0IL 204 D 1 
HETATM 32 C C9F 0IL . . . U 5 207.145 161.943 174.771 1 97.65 ? C9F 0IL 204 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#