data_8WTA # _model_server_result.job_id VNaPKqdfm2TCMHk9TlhjqA _model_server_result.datetime_utc '2025-03-01 19:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":701}' # _entry.id 8WTA # _exptl.entry_id 8WTA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 259.151 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WTA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WTA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG E 1 NAG 3 n E NAG 2 E 2 NAG E 2 NAG 3 n E BMA 3 E 3 BMA E 3 BMA 3 n F NAG 1 F 1 NAG F 1 NAG 3 n F NAG 2 F 2 NAG F 2 NAG 3 n F BMA 3 F 3 BMA F 3 BMA 4 n G NAG 1 G 1 NAG G 1 NAG 4 n G NAG 2 G 2 NAG G 2 NAG 4 n H NAG 1 H 1 NAG H 1 NAG 4 n H NAG 2 H 2 NAG H 2 NAG 3 n I NAG 1 I 1 NAG I 1 NAG 3 n I NAG 2 I 2 NAG I 2 NAG 3 n I BMA 3 I 3 BMA I 3 BMA 3 n J NAG 1 J 1 NAG J 1 NAG 3 n J NAG 2 J 2 NAG J 2 NAG 3 n J BMA 3 J 3 BMA J 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 29 1_555 A SG CYS 14 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 255 A CYS 281 1_555 A SG CYS 280 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 364 A CYS 390 1_555 A SG CYS 365 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 557 A CYS 583 1_555 A SG CYS 583 A CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 559 A CYS 585 1_555 A SG CYS 601 A CYS 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 7 C CYS 25 1_555 B SG CYS 33 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 19 C CYS 37 1_555 B SG CYS 130 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? disulf ? disulf8 B SG CYS 77 C CYS 95 1_555 B SG CYS 87 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 3 B CYS 29 1_555 C SG CYS 14 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 C SG CYS 255 B CYS 281 1_555 C SG CYS 280 B CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 C SG CYS 364 B CYS 390 1_555 C SG CYS 365 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 C SG CYS 557 B CYS 583 1_555 C SG CYS 583 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 C SG CYS 559 B CYS 585 1_555 C SG CYS 601 B CYS 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf14 D SG CYS 7 D CYS 25 1_555 D SG CYS 33 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 D SG CYS 19 D CYS 37 1_555 D SG CYS 130 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? disulf ? disulf16 D SG CYS 77 D CYS 95 1_555 D SG CYS 87 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 179 A ASN 205 1_555 L C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 471 A ASN 497 1_555 M C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 500 A ASN 526 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 549 A ASN 575 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 K C1 GP4 . A GP4 701 1_555 Q OXT XIQ . C XIQ 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 K N2 GP4 . A GP4 701 1_555 R C1 2IL . C 2IL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? covale ? covale7 B ND2 ASN 8 C ASN 26 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 B ND2 ASN 96 C ASN 114 1_555 N C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 O C1 2IL . C 2IL 202 1_555 Q O4 XIQ . C XIQ 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? covale ? covale10 C ND2 ASN 179 B ASN 205 1_555 T C1 NAG . B NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 C ND2 ASN 471 B ASN 497 1_555 U C1 NAG . B NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 C ND2 ASN 500 B ASN 526 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 C ND2 ASN 549 B ASN 575 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale14 S C1 GP4 . B GP4 701 1_555 Y OXT XIQ . D XIQ 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 S N2 GP4 . B GP4 701 1_555 Z C1 2IL . D 2IL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? covale ? covale16 D ND2 ASN 8 D ASN 26 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale17 D ND2 ASN 96 D ASN 114 1_555 V C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 W C1 2IL . D 2IL 202 1_555 Y O4 XIQ . D XIQ 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? covale ? covale19 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale20 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale21 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale22 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale23 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale24 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale25 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale26 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale27 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale28 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? # _chem_comp.formula 'C6 H14 N O8 P' _chem_comp.formula_weight 259.151 _chem_comp.id GP4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'GLUCOSAMINE 4-PHOSPHATE;N-acetyl-4-O-phosphono-alpha-D-glucosamine;2-amino-2-deoxy-4-O-phosphono-alpha-D-glucose;2-amino-2-deoxy-4-O-phosphono-D-glucose;2-amino-2-deoxy-4-O-phosphono-glucose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GP4 sing 317 n n C1 O5 GP4 sing 318 n n C1 O1 GP4 sing 319 n n C1 H1 GP4 sing 320 n n C2 C3 GP4 sing 321 n n C2 N2 GP4 sing 322 n n C2 H2 GP4 sing 323 n n C3 C4 GP4 sing 324 n n C3 O3 GP4 sing 325 n n C3 H3 GP4 sing 326 n n C4 C5 GP4 sing 327 n n C4 O4 GP4 sing 328 n n C4 H4 GP4 sing 329 n n C5 C6 GP4 sing 330 n n C5 O5 GP4 sing 331 n n C5 H5 GP4 sing 332 n n C6 O6 GP4 sing 333 n n C6 H61 GP4 sing 334 n n C6 H62 GP4 sing 335 n n N2 HN2 GP4 sing 336 n n N2 HN22 GP4 sing 337 n n O3 HO3 GP4 sing 338 n n O4 P4A GP4 sing 339 n n O6 HO6 GP4 sing 340 n n O7A P4A GP4 sing 341 n n O7A HOP1 GP4 sing 342 n n P4A O8A GP4 doub 343 n n P4A O9A GP4 sing 344 n n O9A HOP2 GP4 sing 345 n n O1 HO1 GP4 sing 346 n n # _pdbx_chem_comp_identifier.comp_id GP4 _pdbx_chem_comp_identifier.identifier a-D-GlcpN4PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8WTA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 GP4 A 1 701 703 GP4 GP4 . L 6 NAG A 1 702 701 NAG NAG . M 6 NAG A 1 703 702 NAG NAG . N 6 NAG C 1 201 201 NAG NAG . O 7 2IL C 1 202 202 2IL 2IL . P 8 0IL C 1 203 203 0IL 0IL . Q 9 XIQ C 1 204 204 XIQ XIQ . R 7 2IL C 1 205 205 2IL 2IL . S 5 GP4 B 1 701 703 GP4 GP4 . T 6 NAG B 1 702 701 NAG NAG . U 6 NAG B 1 703 702 NAG NAG . V 6 NAG D 1 201 201 NAG NAG . W 7 2IL D 1 202 202 2IL 2IL . X 8 0IL D 1 203 203 0IL 0IL . Y 9 XIQ D 1 204 204 XIQ XIQ . Z 7 2IL D 1 205 205 2IL 2IL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GP4 . . . S 5 181.537 154.722 182.951 1 134.43 ? C1 GP4 701 B 1 HETATM 2 C C2 GP4 . . . S 5 182.648 155.113 181.957 1 134.43 ? C2 GP4 701 B 1 HETATM 3 C C3 GP4 . . . S 5 183.867 155.676 182.67 1 134.43 ? C3 GP4 701 B 1 HETATM 4 C C4 GP4 . . . S 5 183.46 156.738 183.656 1 134.43 ? C4 GP4 701 B 1 HETATM 5 C C5 GP4 . . . S 5 182.442 156.177 184.62 1 134.43 ? C5 GP4 701 B 1 HETATM 6 C C6 GP4 . . . S 5 182.059 157.208 185.673 1 134.43 ? C6 GP4 701 B 1 HETATM 7 N N2 GP4 . . . S 5 183.061 153.884 181.161 1 134.43 ? N2 GP4 701 B 1 HETATM 8 O O3 GP4 . . . S 5 184.774 156.223 181.713 1 134.43 ? O3 GP4 701 B 1 HETATM 9 O O4 GP4 . . . S 5 184.605 157.186 184.377 1 134.43 ? O4 GP4 701 B 1 HETATM 10 O O6 GP4 . . . S 5 181.113 156.633 186.58 1 134.43 ? O6 GP4 701 B 1 HETATM 11 O O5 GP4 . . . S 5 181.279 155.784 183.897 1 134.43 ? O5 GP4 701 B 1 HETATM 12 O O7A GP4 . . . S 5 185.387 159.011 182.487 1 134.43 ? O7A GP4 701 B 1 HETATM 13 P P4A GP4 . . . S 5 184.866 158.807 184.083 1 134.43 ? P4A GP4 701 B 1 HETATM 14 O O8A GP4 . . . S 5 186.034 159.345 185.089 1 134.43 ? O8A GP4 701 B 1 HETATM 15 O O9A GP4 . . . S 5 183.452 159.686 184.377 1 134.43 ? O9A GP4 701 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 15 #