data_8WTL # _model_server_result.job_id dUBUwkms3zocsJOEOhx4uQ _model_server_result.datetime_utc '2025-01-02 20:17:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wtl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8WTL # _exptl.entry_id 8WTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8WTL _cell.length_a 115.246 _cell.length_b 115.246 _cell.length_c 119.229 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 2 A HIS 9 1_555 A N MSE 3 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 3 A MSE 10 1_555 A N ARG 4 A ARG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 A C PRO 79 A PRO 86 1_555 A N MSE 80 A MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 80 A MSE 87 1_555 A N ARG 81 A ARG 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C SER 172 A SER 179 1_555 A N MSE 173 A MSE 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MSE 173 A MSE 180 1_555 A N VAL 174 A VAL 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C ILE 193 A ILE 200 1_555 A N MSE 194 A MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 194 A MSE 201 1_555 A N THR 195 A THR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C VAL 283 A VAL 290 1_555 A N MSE 284 A MSE 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 284 A MSE 291 1_555 A N LEU 285 A LEU 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C ARG 289 A ARG 296 1_555 A N MSE 290 A MSE 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale12 A C MSE 290 A MSE 297 1_555 A N THR 291 A THR 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 A C LEU 329 A LEU 336 1_555 A N MSE 330 A MSE 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale14 A C MSE 330 A MSE 337 1_555 A N ILE 331 A ILE 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C LEU 380 A LEU 387 1_555 A N MSE 381 A MSE 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 A C MSE 381 A MSE 388 1_555 A N LYS 382 A LYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 A C LEU 420 A LEU 427 1_555 A N MSE 421 A MSE 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale18 A C MSE 421 A MSE 428 1_555 A N LYS 422 A LYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 A C ILE 445 A ILE 452 1_555 A N MSE 446 A MSE 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale20 A C MSE 446 A MSE 453 1_555 A N ARG 447 A ARG 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 A C ASP 458 A ASP 465 1_555 A N MSE 459 A MSE 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale22 A C MSE 459 A MSE 466 1_555 A N VAL 460 A VAL 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A OD2 ASP 162 A ASP 169 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc2 A O ALA 321 A ALA 328 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc3 B O3G ATP . A ATP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc4 B O2B ATP . A ATP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8WTL _atom_sites.fract_transf_matrix[1][1] 0.008677 _atom_sites.fract_transf_matrix[1][2] 0.00501 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 601 1 ATP ATP . C 3 MG A 1 602 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -3.867 94.434 13.873 1 100.93 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . B 2 -5.249 94.783 13.341 1 84.88 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . B 2 -2.785 94.441 12.844 1 83.86 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . B 2 -3.791 93.249 14.843 1 100.78 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . B 2 -3.835 96.017 16.278 1 86.35 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . B 2 -4.958 97.018 16.271 1 85.07 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . B 2 -3.939 94.678 17.012 1 94.05 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . B 2 -3.412 95.718 14.741 1 97.86 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . B 2 -1.317 96.007 17.281 1 92.1 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . B 2 -0.768 95.13 16.151 1 110.1 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . B 2 -1.714 95.469 18.631 1 94.93 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . B 2 -2.541 96.842 16.7 1 85.49 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . B 2 -0.311 97.203 17.529 1 91.44 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . B 2 0.84 96.834 18.242 1 100.17 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . B 2 1.827 97.869 17.815 1 95.01 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . B 2 1.2 99.131 17.992 1 94.76 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . B 2 3.023 97.741 18.722 1 103.23 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . B 2 4.12 97.31 17.91 1 102.46 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . B 2 3.244 99.131 19.266 1 111.92 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . B 2 4.438 99.72 18.717 1 113.89 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . B 2 2.073 99.951 18.764 1 107.39 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . B 2 1.341 100.553 19.893 1 112.97 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . B 2 0.486 99.955 20.752 1 106.43 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . B 2 0.008 100.882 21.627 1 102.46 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . B 2 0.575 102.08 21.328 1 107.91 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . B 2 0.546 103.485 21.82 1 109.08 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . B 2 -0.219 103.873 22.871 1 117.3 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . B 2 1.311 104.407 21.196 1 113.68 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . B 2 2.087 104.107 20.147 1 113.7 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . B 2 2.167 102.866 19.641 1 112.91 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . B 2 1.452 101.844 20.181 1 113.32 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #