data_8WWC # _model_server_result.job_id REwXZ12qnA5poBk9MQk3Qg _model_server_result.datetime_utc '2024-11-22 22:42:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8WWC # _exptl.entry_id 8WWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8WWC _cell.length_a 89.967 _cell.length_b 89.967 _cell.length_c 188.124 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 17 A SER 17 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 B OG1 THR 35 A THR 35 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 E O1G GNP . A GNP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 E O2B GNP . A GNP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc5 C OG SER 17 B SER 17 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc6 C OG1 THR 35 B THR 35 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 G O3G GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc8 G O1B GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc9 G O2A GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 8WWC _atom_sites.fract_transf_matrix[1][1] 0.011115 _atom_sites.fract_transf_matrix[1][2] 0.006417 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GNP A 1 201 201 GNP GNP . F 4 MG A 1 202 4 MG MG . G 3 GNP B 1 201 201 GNP GNP . H 4 MG B 1 202 3 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 3 28.968 -24.068 -22.601 1 52.75 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . E 3 27.588 -24.04 -23.185 1 64.69 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . E 3 29.971 -24.444 -23.692 1 74.56 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . E 3 29.319 -22.67 -22.022 1 55.28 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . E 3 29.019 -25.234 -21.356 1 59.9 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . E 3 28.006 -25.101 -20.073 1 49.41 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . E 3 28.5 -24.025 -19.139 1 52.74 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . E 3 26.619 -24.768 -20.552 1 57.26 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . E 3 27.971 -26.533 -19.279 1 55.83 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . E 3 26.752 -27.544 -19.385 1 53.37 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . E 3 26.577 -27.883 -20.864 1 64.57 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . E 3 25.553 -27.012 -18.701 1 42.08 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . E 3 27.294 -28.805 -18.617 1 48.2 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . E 3 28.279 -29.681 -19.207 1 45.8 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . E 3 28.174 -30.987 -18.465 1 45.11 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . E 3 28.477 -30.751 -17.082 1 55.18 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . E 3 26.774 -31.591 -18.482 1 65.11 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . E 3 26.665 -32.535 -19.54 1 91.94 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . E 3 26.643 -32.278 -17.114 1 57.2 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . E 3 26.801 -33.689 -17.211 1 86.63 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . E 3 27.761 -31.653 -16.266 1 51.49 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . E 3 27.266 -30.912 -15.096 1 43.13 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . E 3 26.687 -29.67 -15.089 1 40.21 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . E 3 26.353 -29.261 -13.886 1 39.11 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . E 3 26.74 -30.298 -13.054 1 40.13 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . E 3 26.644 -30.453 -11.621 1 40.48 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . E 3 26.176 -29.653 -10.812 1 47.56 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . E 3 27.162 -31.66 -11.197 1 48.94 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . E 3 27.706 -32.616 -12.014 1 46.73 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . E 3 28.158 -33.725 -11.426 1 43.96 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . E 3 27.801 -32.487 -13.336 1 37.86 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . E 3 27.307 -31.319 -13.785 1 45.27 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #