data_8WWC
#
_model_server_result.job_id            ldNHkdKsJ7oH6vXXhQekNw 
_model_server_result.datetime_utc      '2024-11-22 22:29:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wwc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    8WWC 
#
_exptl.entry_id    8WWC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8WWC 
_cell.length_a            89.967 
_cell.length_b            89.967 
_cell.length_c            188.124 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WWC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    'P 6c' 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG SER 17 A SER 17 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 B OG1 THR 35 A THR 35 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc3 E O1G GNP . A GNP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc4 E O2B GNP . A GNP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc5 C OG SER 17 B SER 17 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc6 C OG1 THR 35 B THR 35 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc7 G O3G GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc8 G O1B GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc9 G O2A GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     8WWC 
_atom_sites.fract_transf_matrix[1][1]    0.011115 
_atom_sites.fract_transf_matrix[1][2]    0.006417 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GNP A 1 201 201 GNP GNP . 
F 4 MG A 1 202 4 MG MG . 
G 3 GNP B 1 201 201 GNP GNP . 
H 4 MG B 1 202 3 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . G 3 9.783 -12.78 22.315 1 64.05 ? PG GNP 201 B 1 
HETATM 2 O O1G GNP . . . G 3 8.863 -11.954 23.167 1 82.74 ? O1G GNP 201 B 1 
HETATM 3 O O2G GNP . . . G 3 10.865 -11.882 21.712 1 63.07 ? O2G GNP 201 B 1 
HETATM 4 O O3G GNP . . . G 3 10.441 -13.881 23.189 1 77.73 ? O3G GNP 201 B 1 
HETATM 5 N N3B GNP . . . G 3 8.888 -13.531 21.074 1 61.1 ? N3B GNP 201 B 1 
HETATM 6 P PB GNP . . . G 3 9.632 -14.03 19.699 1 53.76 ? PB GNP 201 B 1 
HETATM 7 O O1B GNP . . . G 3 10.907 -14.765 20.031 1 63.93 ? O1B GNP 201 B 1 
HETATM 8 O O2B GNP . . . G 3 9.937 -12.841 18.83 1 59.68 ? O2B GNP 201 B 1 
HETATM 9 O O3A GNP . . . G 3 8.611 -15.022 18.885 1 48.03 ? O3A GNP 201 B 1 
HETATM 10 P PA GNP . . . G 3 8.097 -16.412 19.451 1 55.01 ? PA GNP 201 B 1 
HETATM 11 O O1A GNP . . . G 3 8.497 -17.479 18.435 1 54.99 ? O1A GNP 201 B 1 
HETATM 12 O O2A GNP . . . G 3 8.571 -16.637 20.833 1 87.38 ? O2A GNP 201 B 1 
HETATM 13 O O5' GNP . . . G 3 6.531 -16.235 19.444 1 63.9 ? O5' GNP 201 B 1 
HETATM 14 C C5' GNP . . . G 3 5.846 -15.701 18.292 1 53.69 ? C5' GNP 201 B 1 
HETATM 15 C C4' GNP . . . G 3 4.451 -16.274 18.243 1 51.42 ? C4' GNP 201 B 1 
HETATM 16 O O4' GNP . . . G 3 4.006 -16.336 16.871 1 55.83 ? O4' GNP 201 B 1 
HETATM 17 C C3' GNP . . . G 3 4.313 -17.7 18.759 1 64.3 ? C3' GNP 201 B 1 
HETATM 18 O O3' GNP . . . G 3 2.982 -17.957 19.188 1 74.02 ? O3' GNP 201 B 1 
HETATM 19 C C2' GNP . . . G 3 4.67 -18.524 17.521 1 61.21 ? C2' GNP 201 B 1 
HETATM 20 O O2' GNP . . . G 3 4.058 -19.808 17.546 1 70.83 ? O2' GNP 201 B 1 
HETATM 21 C C1' GNP . . . G 3 4.076 -17.671 16.394 1 53.37 ? C1' GNP 201 B 1 
HETATM 22 N N9 GNP . . . G 3 4.894 -17.683 15.17 1 50.38 ? N9 GNP 201 B 1 
HETATM 23 C C8 GNP . . . G 3 6.246 -17.481 15.085 1 47.83 ? C8 GNP 201 B 1 
HETATM 24 N N7 GNP . . . G 3 6.706 -17.555 13.857 1 39.75 ? N7 GNP 201 B 1 
HETATM 25 C C5 GNP . . . G 3 5.586 -17.82 13.09 1 42.43 ? C5 GNP 201 B 1 
HETATM 26 C C6 GNP . . . G 3 5.434 -18.011 11.665 1 49.01 ? C6 GNP 201 B 1 
HETATM 27 O O6 GNP . . . G 3 6.315 -17.974 10.806 1 44.54 ? O6 GNP 201 B 1 
HETATM 28 N N1 GNP . . . G 3 4.122 -18.257 11.316 1 45.65 ? N1 GNP 201 B 1 
HETATM 29 C C2 GNP . . . G 3 3.069 -18.32 12.19 1 45.67 ? C2 GNP 201 B 1 
HETATM 30 N N2 GNP . . . G 3 1.867 -18.569 11.668 1 46.33 ? N2 GNP 201 B 1 
HETATM 31 N N3 GNP . . . G 3 3.194 -18.146 13.506 1 40.07 ? N3 GNP 201 B 1 
HETATM 32 C C4 GNP . . . G 3 4.462 -17.903 13.883 1 45.8 ? C4 GNP 201 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#