data_8WWW # _model_server_result.job_id iiR1G9o3LNhbhvavMudV3g _model_server_result.datetime_utc '2024-11-09 02:50:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8www # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8WWW # _exptl.entry_id 8WWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.398 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(2R)-2-azanylpropanoyl]sulfamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.86 _cell.angle_gamma 90 _cell.entry_id 8WWW _cell.length_a 189.998 _cell.length_b 77.308 _cell.length_c 102.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,M 1 1 B,F,G,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C13 H19 N7 O7 S' _chem_comp.formula_weight 417.398 _chem_comp.id YG3 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(2R)-2-azanylpropanoyl]sulfamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "5'-O-(N-(D-ALANYL)-SULFAMOYL)ADENOSINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 YG3 sing 402 n n C2 C1 YG3 sing 403 n n C2 C3 YG3 sing 404 n n C3 O1 YG3 doub 405 n n C3 N2 YG3 sing 406 n n N2 S1 YG3 sing 407 n n O3 S1 YG3 doub 408 n n S1 O2 YG3 doub 409 n n S1 O4 YG3 sing 410 n n O4 C4 YG3 sing 411 n n C4 C5 YG3 sing 412 n n O7 C13 YG3 sing 413 n n C5 C13 YG3 sing 414 n n C5 O5 YG3 sing 415 n n C13 C12 YG3 sing 416 n n O5 C6 YG3 sing 417 n n C12 O6 YG3 sing 418 n n C12 C6 YG3 sing 419 n n C6 N3 YG3 sing 420 n n N7 C10 YG3 doub 421 n y N7 C11 YG3 sing 422 n y C10 N6 YG3 sing 423 n y C11 N3 YG3 sing 424 n y C11 C8 YG3 doub 425 n y N3 C7 YG3 sing 426 n y N6 C9 YG3 doub 427 n y C7 N4 YG3 doub 428 n y C8 C9 YG3 sing 429 n y C8 N4 YG3 sing 430 n y C9 N5 YG3 sing 431 n n C4 H1 YG3 sing 432 n n C4 H2 YG3 sing 433 n n C5 H3 YG3 sing 434 n n C6 H4 YG3 sing 435 n n C7 H5 YG3 sing 436 n n C10 H6 YG3 sing 437 n n C12 H7 YG3 sing 438 n n C13 H8 YG3 sing 439 n n N1 H9 YG3 sing 440 n n N1 H10 YG3 sing 441 n n N2 H12 YG3 sing 442 n n C1 H13 YG3 sing 443 n n C1 H14 YG3 sing 444 n n C1 H15 YG3 sing 445 n n C2 H16 YG3 sing 446 n n N5 H17 YG3 sing 447 n n N5 H18 YG3 sing 448 n n O6 H19 YG3 sing 449 n n O7 H20 YG3 sing 450 n n # _atom_sites.entry_id 8WWW _atom_sites.fract_transf_matrix[1][1] 0.005263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002901 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YG3 A 1 601 601 YG3 YG3 . D 3 DMS A 1 602 602 DMS DMS . E 3 DMS A 1 603 603 DMS DMS . F 2 YG3 B 1 601 601 YG3 YG3 . G 4 SO4 B 1 602 602 SO4 SO4 . H 4 SO4 B 1 603 603 SO4 SO4 . I 3 DMS B 1 604 604 DMS DMS . J 3 DMS B 1 605 605 DMS DMS . K 3 DMS B 1 606 606 DMS DMS . L 5 GOL B 1 607 607 GOL GOL . M 6 HOH A 1 701 703 HOH HOH . M 6 HOH A 2 702 701 HOH HOH . M 6 HOH A 3 703 702 HOH HOH . M 6 HOH A 4 704 704 HOH HOH . M 6 HOH A 5 705 705 HOH HOH . M 6 HOH A 6 706 706 HOH HOH . M 6 HOH A 7 707 708 HOH HOH . M 6 HOH A 8 708 707 HOH HOH . M 6 HOH A 9 709 709 HOH HOH . M 6 HOH A 10 710 711 HOH HOH . M 6 HOH A 11 711 712 HOH HOH . M 6 HOH A 12 712 710 HOH HOH . M 6 HOH A 13 713 713 HOH HOH . M 6 HOH A 14 714 721 HOH HOH . M 6 HOH A 15 715 715 HOH HOH . M 6 HOH A 16 716 717 HOH HOH . M 6 HOH A 17 717 719 HOH HOH . M 6 HOH A 18 718 718 HOH HOH . M 6 HOH A 19 719 729 HOH HOH . M 6 HOH A 20 720 716 HOH HOH . M 6 HOH A 21 721 714 HOH HOH . M 6 HOH A 22 722 724 HOH HOH . M 6 HOH A 23 723 722 HOH HOH . M 6 HOH A 24 724 720 HOH HOH . M 6 HOH A 25 725 728 HOH HOH . M 6 HOH A 26 726 723 HOH HOH . M 6 HOH A 27 727 725 HOH HOH . M 6 HOH A 28 728 730 HOH HOH . M 6 HOH A 29 729 726 HOH HOH . M 6 HOH A 30 730 727 HOH HOH . N 6 HOH B 1 701 701 HOH HOH . N 6 HOH B 2 702 703 HOH HOH . N 6 HOH B 3 703 702 HOH HOH . N 6 HOH B 4 704 704 HOH HOH . N 6 HOH B 5 705 705 HOH HOH . N 6 HOH B 6 706 706 HOH HOH . N 6 HOH B 7 707 707 HOH HOH . N 6 HOH B 8 708 709 HOH HOH . N 6 HOH B 9 709 710 HOH HOH . N 6 HOH B 10 710 711 HOH HOH . N 6 HOH B 11 711 714 HOH HOH . N 6 HOH B 12 712 708 HOH HOH . N 6 HOH B 13 713 712 HOH HOH . N 6 HOH B 14 714 715 HOH HOH . N 6 HOH B 15 715 717 HOH HOH . N 6 HOH B 16 716 718 HOH HOH . N 6 HOH B 17 717 713 HOH HOH . N 6 HOH B 18 718 716 HOH HOH . N 6 HOH B 19 719 719 HOH HOH . N 6 HOH B 20 720 720 HOH HOH . N 6 HOH B 21 721 722 HOH HOH . N 6 HOH B 22 722 721 HOH HOH . N 6 HOH B 23 723 723 HOH HOH . N 6 HOH B 24 724 724 HOH HOH . N 6 HOH B 25 725 731 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 YG3 . . . C 2 -4.712 -37.29 -23.149 0.67 65.73 ? C4 YG3 601 A 1 HETATM 2 C C5 YG3 . . . C 2 -6.043 -37.261 -22.405 0.67 75.82 ? C5 YG3 601 A 1 HETATM 3 C C6 YG3 . . . C 2 -5.689 -38.527 -20.491 0.67 74.6 ? C6 YG3 601 A 1 HETATM 4 C C11 YG3 . . . C 2 -4.397 -40.054 -19.102 0.67 68.19 ? C11 YG3 601 A 1 HETATM 5 C C7 YG3 . . . C 2 -3.971 -40.254 -21.199 0.67 77.07 ? C7 YG3 601 A 1 HETATM 6 C C8 YG3 . . . C 2 -3.483 -41.007 -19.246 0.67 68.67 ? C8 YG3 601 A 1 HETATM 7 C C9 YG3 . . . C 2 -2.998 -41.637 -18.185 0.67 62.19 ? C9 YG3 601 A 1 HETATM 8 C C10 YG3 . . . C 2 -4.365 -40.35 -16.769 0.67 60.16 ? C10 YG3 601 A 1 HETATM 9 C C12 YG3 . . . C 2 -5.015 -37.179 -20.394 0.67 71.74 ? C12 YG3 601 A 1 HETATM 10 C C13 YG3 . . . C 2 -5.919 -36.348 -21.235 0.67 75.8 ? C13 YG3 601 A 1 HETATM 11 N N1 YG3 . . . C 2 -7.235 -37.148 -29.524 0.67 43.72 ? N1 YG3 601 A 1 HETATM 12 N N2 YG3 . . . C 2 -6.45 -38.163 -26.423 0.67 64.06 ? N2 YG3 601 A 1 HETATM 13 C C3 YG3 . . . C 2 -6.424 -37.074 -27.208 0.67 67.41 ? C3 YG3 601 A 1 HETATM 14 N N3 YG3 . . . C 2 -4.697 -39.597 -20.303 0.67 74 ? N3 YG3 601 A 1 HETATM 15 C C1 YG3 . . . C 2 -8.236 -35.537 -27.947 0.67 56.97 ? C1 YG3 601 A 1 HETATM 16 C C2 YG3 . . . C 2 -7.636 -36.93 -28.129 0.67 55.5 ? C2 YG3 601 A 1 HETATM 17 N N4 YG3 . . . C 2 -3.218 -41.129 -20.541 0.67 73.96 ? N4 YG3 601 A 1 HETATM 18 N N5 YG3 . . . C 2 -2.089 -42.572 -18.423 0.67 55.95 ? N5 YG3 601 A 1 HETATM 19 N N6 YG3 . . . C 2 -3.407 -41.346 -16.946 0.67 62.7 ? N6 YG3 601 A 1 HETATM 20 N N7 YG3 . . . C 2 -4.856 -39.706 -17.896 0.67 59.97 ? N7 YG3 601 A 1 HETATM 21 O O1 YG3 . . . C 2 -5.52 -36.24 -27.228 0.67 73.51 ? O1 YG3 601 A 1 HETATM 22 O O2 YG3 . . . C 2 -3.94 -38.761 -26.136 0.67 69.2 ? O2 YG3 601 A 1 HETATM 23 O O3 YG3 . . . C 2 -5.565 -39.634 -24.518 0.67 68.14 ? O3 YG3 601 A 1 HETATM 24 O O4 YG3 . . . C 2 -4.975 -37.187 -24.541 0.67 68.23 ? O4 YG3 601 A 1 HETATM 25 O O5 YG3 . . . C 2 -6.246 -38.568 -21.827 0.67 77.83 ? O5 YG3 601 A 1 HETATM 26 O O6 YG3 . . . C 2 -5.078 -36.732 -19.05 0.67 68.05 ? O6 YG3 601 A 1 HETATM 27 O O7 YG3 . . . C 2 -7.193 -36.231 -20.591 0.67 70.54 ? O7 YG3 601 A 1 HETATM 28 S S1 YG3 . . . C 2 -5.219 -38.43 -25.39 0.67 79.07 ? S1 YG3 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #