data_8WXY
#
_model_server_result.job_id            XzbZyimJOvDpvPY_Bqg9xQ 
_model_server_result.datetime_utc      '2024-10-10 01:26:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8WXY 
#
_exptl.entry_id    8WXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.596 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-4-[(2-morpholin-4-yl-2-oxidanylidene-ethyl)amino]pyridin-2-one 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8WXY 
_cell.length_a            140.323 
_cell.length_b            140.323 
_cell.length_c            135.226 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,C,F,G,I,J 1 1 
A,D,E,H 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -22.537667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C29 H34 F N3 O5' 
_chem_comp.formula_weight    523.596 
_chem_comp.id                XGN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-4-[(2-morpholin-4-yl-2-oxidanylidene-ethyl)amino]pyridin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OBA CAX XGN doub 389 n n 
OBK CBJ XGN sing 390 n n 
OBK CBL XGN sing 391 n n 
CAX CAW XGN sing 392 n n 
CAX NAY XGN sing 393 n n 
CAW CAV XGN doub 394 n n 
CBC NAY XGN sing 395 n n 
CBJ CBI XGN sing 396 n n 
CBL CBM XGN sing 397 n n 
NAY CAZ XGN sing 398 n n 
CA C XGN sing 399 n n 
CA N XGN sing 400 n n 
C O XGN doub 401 n n 
C NBF XGN sing 402 n n 
NBF CBM XGN sing 403 n n 
NBF CBI XGN sing 404 n n 
CAV N XGN sing 405 n n 
CAV CAU XGN sing 406 n n 
CAZ CAU XGN doub 407 n n 
CAU CAA XGN sing 408 n n 
CAA CAF XGN doub 409 n y 
CAA CAB XGN sing 410 n y 
CAF CAE XGN sing 411 n y 
OAK CAH XGN sing 412 n n 
OAG CAB XGN sing 413 n n 
OAG CAL XGN sing 414 n n 
CAI CAH XGN sing 415 n n 
CAB CAC XGN doub 416 n y 
CAE CAH XGN sing 417 n n 
CAE CAD XGN doub 418 n y 
CAH CAJ XGN sing 419 n n 
CAS CAQ XGN sing 420 n n 
CAL CAQ XGN doub 421 n y 
CAL CAM XGN sing 422 n y 
CAQ CAP XGN sing 423 n y 
CAR CAM XGN sing 424 n n 
CAC CAD XGN sing 425 n y 
CAM CAN XGN doub 426 n y 
CAP CAO XGN doub 427 n y 
CAN CAO XGN sing 428 n y 
CAO FAT XGN sing 429 n n 
CBI H1 XGN sing 430 n n 
CBI H2 XGN sing 431 n n 
CBJ H3 XGN sing 432 n n 
CBJ H4 XGN sing 433 n n 
CBL H5 XGN sing 434 n n 
CBL H6 XGN sing 435 n n 
CBM H7 XGN sing 436 n n 
CBM H8 XGN sing 437 n n 
CA H9 XGN sing 438 n n 
CA H10 XGN sing 439 n n 
N H11 XGN sing 440 n n 
CAW H12 XGN sing 441 n n 
CBC H13 XGN sing 442 n n 
CBC H14 XGN sing 443 n n 
CBC H15 XGN sing 444 n n 
CAZ H16 XGN sing 445 n n 
CAF H17 XGN sing 446 n n 
CAI H18 XGN sing 447 n n 
CAI H19 XGN sing 448 n n 
CAI H20 XGN sing 449 n n 
CAJ H21 XGN sing 450 n n 
CAJ H22 XGN sing 451 n n 
CAJ H23 XGN sing 452 n n 
OAK H24 XGN sing 453 n n 
CAD H25 XGN sing 454 n n 
CAC H26 XGN sing 455 n n 
CAR H27 XGN sing 456 n n 
CAR H28 XGN sing 457 n n 
CAR H29 XGN sing 458 n n 
CAN H30 XGN sing 459 n n 
CAP H31 XGN sing 460 n n 
CAS H32 XGN sing 461 n n 
CAS H33 XGN sing 462 n n 
CAS H34 XGN sing 463 n n 
#
_atom_sites.entry_id                     8WXY 
_atom_sites.fract_transf_matrix[1][1]    0.007126 
_atom_sites.fract_transf_matrix[1][2]    0.004114 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008229 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 XGN A 1 201 1 XGN JIQ . 
E 3 GOL A 1 202 4 GOL GOL . 
F 2 XGN B 1 201 2 XGN JIQ . 
G 2 XGN C 1 201 3 XGN JIQ . 
H 4 HOH A 1 301 2 HOH HOH . 
H 4 HOH A 2 302 5 HOH HOH . 
H 4 HOH A 3 303 3 HOH HOH . 
H 4 HOH A 4 304 4 HOH HOH . 
I 4 HOH B 1 301 9 HOH HOH . 
I 4 HOH B 2 302 7 HOH HOH . 
I 4 HOH B 3 303 1 HOH HOH . 
J 4 HOH C 1 301 8 HOH HOH . 
J 4 HOH C 2 302 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBI XGN . . . D 2 -68.369 29.553 8.284 1 91.97 ? CBI XGN 201 A 1 
HETATM 2 C CBJ XGN . . . D 2 -69.759 30.05 8.359 1 88.55 ? CBJ XGN 201 A 1 
HETATM 3 O OBK XGN . . . D 2 -70.435 29.481 7.187 1 91.4 ? OBK XGN 201 A 1 
HETATM 4 C CBL XGN . . . D 2 -70.057 29.933 5.865 1 89.61 ? CBL XGN 201 A 1 
HETATM 5 C CBM XGN . . . D 2 -68.634 29.471 5.625 1 94.7 ? CBM XGN 201 A 1 
HETATM 6 N NBF XGN . . . D 2 -67.776 29.589 6.881 1 101.95 ? NBF XGN 201 A 1 
HETATM 7 C C XGN . . . D 2 -66.426 29.699 6.795 1 95.53 ? C XGN 201 A 1 
HETATM 8 O O XGN . . . D 2 -65.68 29.742 7.787 1 93.28 ? O XGN 201 A 1 
HETATM 9 C CA XGN . . . D 2 -65.853 29.742 5.392 1 85.11 ? CA XGN 201 A 1 
HETATM 10 N N XGN . . . D 2 -64.428 29.468 5.598 1 79.46 ? N XGN 201 A 1 
HETATM 11 C CAV XGN . . . D 2 -63.451 30.352 5.927 1 68.97 ? CAV XGN 201 A 1 
HETATM 12 C CAW XGN . . . D 2 -63.648 31.665 6.393 1 64.98 ? CAW XGN 201 A 1 
HETATM 13 C CAX XGN . . . D 2 -62.568 32.502 6.709 1 63.09 ? CAX XGN 201 A 1 
HETATM 14 O OBA XGN . . . D 2 -62.721 33.659 7.122 1 65.14 ? OBA XGN 201 A 1 
HETATM 15 N NAY XGN . . . D 2 -61.331 32.031 6.573 1 59.81 ? NAY XGN 201 A 1 
HETATM 16 C CBC XGN . . . D 2 -60.158 32.844 6.919 1 58.93 ? CBC XGN 201 A 1 
HETATM 17 C CAZ XGN . . . D 2 -61.112 30.738 6.129 1 62.03 ? CAZ XGN 201 A 1 
HETATM 18 C CAU XGN . . . D 2 -62.146 29.875 5.798 1 63.47 ? CAU XGN 201 A 1 
HETATM 19 C CAA XGN . . . D 2 -61.772 28.592 5.34 1 60.72 ? CAA XGN 201 A 1 
HETATM 20 C CAF XGN . . . D 2 -60.969 28.515 4.188 1 60.52 ? CAF XGN 201 A 1 
HETATM 21 C CAE XGN . . . D 2 -60.529 27.312 3.638 1 55.28 ? CAE XGN 201 A 1 
HETATM 22 C CAH XGN . . . D 2 -59.691 27.233 2.494 1 54.43 ? CAH XGN 201 A 1 
HETATM 23 C CAI XGN . . . D 2 -60.302 26.46 1.325 1 56.02 ? CAI XGN 201 A 1 
HETATM 24 C CAJ XGN . . . D 2 -58.424 26.544 2.998 1 46.96 ? CAJ XGN 201 A 1 
HETATM 25 O OAK XGN . . . D 2 -59.357 28.517 1.891 1 64.88 ? OAK XGN 201 A 1 
HETATM 26 C CAD XGN . . . D 2 -60.893 26.169 4.322 1 57.03 ? CAD XGN 201 A 1 
HETATM 27 C CAC XGN . . . D 2 -61.689 26.209 5.457 1 55.67 ? CAC XGN 201 A 1 
HETATM 28 C CAB XGN . . . D 2 -62.126 27.408 5.985 1 56.03 ? CAB XGN 201 A 1 
HETATM 29 O OAG XGN . . . D 2 -62.905 27.527 7.09 1 51.78 ? OAG XGN 201 A 1 
HETATM 30 C CAL XGN . . . D 2 -63.318 26.423 7.785 1 54.24 ? CAL XGN 201 A 1 
HETATM 31 C CAM XGN . . . D 2 -62.645 26.112 8.967 1 54.29 ? CAM XGN 201 A 1 
HETATM 32 C CAR XGN . . . D 2 -61.558 26.858 9.44 1 53.66 ? CAR XGN 201 A 1 
HETATM 33 C CAN XGN . . . D 2 -63.096 25.01 9.694 1 58.65 ? CAN XGN 201 A 1 
HETATM 34 C CAO XGN . . . D 2 -64.178 24.243 9.235 1 59.46 ? CAO XGN 201 A 1 
HETATM 35 F FAT XGN . . . D 2 -64.577 23.249 9.892 1 72.67 ? FAT XGN 201 A 1 
HETATM 36 C CAP XGN . . . D 2 -64.842 24.548 8.062 1 55.67 ? CAP XGN 201 A 1 
HETATM 37 C CAQ XGN . . . D 2 -64.421 25.65 7.331 1 56.67 ? CAQ XGN 201 A 1 
HETATM 38 C CAS XGN . . . D 2 -65.134 25.937 6.169 1 60.02 ? CAS XGN 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#