data_8WY3 # _model_server_result.job_id j0CokbWVxKf9kCu_npZ3DA _model_server_result.datetime_utc '2024-10-10 01:24:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8WY3 # _exptl.entry_id 8WY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.57 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-cyclopropyl-2-[[5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-2-oxidanylidene-pyridin-4-yl]amino]ethanamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8WY3 _cell.length_a 140.409 _cell.length_b 140.409 _cell.length_c 134.482 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,E,F,H 1 1 A,D,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -22.413667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C28 H32 F N3 O4' _chem_comp.formula_weight 493.57 _chem_comp.id XHE _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-cyclopropyl-2-[[5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-2-oxidanylidene-pyridin-4-yl]amino]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OBA CAX XHE doub 376 n n CAX CAW XHE sing 377 n n CAX NAY XHE sing 378 n n CAW CAV XHE doub 379 n n CBC NAY XHE sing 380 n n NAY CAZ XHE sing 381 n n CBJ CBH XHE sing 382 n n CBJ CBI XHE sing 383 n n CA C XHE sing 384 n n CA N XHE sing 385 n n NBF C XHE sing 386 n n NBF CBH XHE sing 387 n n C O XHE doub 388 n n CAV N XHE sing 389 n n CAV CAU XHE sing 390 n n CBH CBI XHE sing 391 n n CAZ CAU XHE doub 392 n n CAU CAA XHE sing 393 n n CAA CAF XHE doub 394 n y CAA CAB XHE sing 395 n y CAF CAE XHE sing 396 n y OAK CAH XHE sing 397 n n OAG CAB XHE sing 398 n n OAG CAL XHE sing 399 n n CAB CAC XHE doub 400 n y CAS CAQ XHE sing 401 n n CAE CAH XHE sing 402 n n CAE CAD XHE doub 403 n y CAH CAI XHE sing 404 n n CAH CAJ XHE sing 405 n n CAL CAQ XHE doub 406 n y CAL CAM XHE sing 407 n y CAQ CAP XHE sing 408 n y CAR CAM XHE sing 409 n n CAC CAD XHE sing 410 n y CAM CAN XHE doub 411 n y CAP CAO XHE doub 412 n y CAN CAO XHE sing 413 n y CAO FAT XHE sing 414 n n CBI H1 XHE sing 415 n n CBI H2 XHE sing 416 n n CBJ H3 XHE sing 417 n n CBJ H4 XHE sing 418 n n CBH H5 XHE sing 419 n n NBF H6 XHE sing 420 n n CA H7 XHE sing 421 n n CA H8 XHE sing 422 n n N H9 XHE sing 423 n n CAW H10 XHE sing 424 n n CBC H11 XHE sing 425 n n CBC H12 XHE sing 426 n n CBC H13 XHE sing 427 n n CAZ H14 XHE sing 428 n n CAF H15 XHE sing 429 n n CAI H16 XHE sing 430 n n CAI H17 XHE sing 431 n n CAI H18 XHE sing 432 n n CAJ H19 XHE sing 433 n n CAJ H20 XHE sing 434 n n CAJ H21 XHE sing 435 n n OAK H22 XHE sing 436 n n CAD H23 XHE sing 437 n n CAC H24 XHE sing 438 n n CAR H25 XHE sing 439 n n CAR H26 XHE sing 440 n n CAR H27 XHE sing 441 n n CAN H28 XHE sing 442 n n CAP H29 XHE sing 443 n n CAS H30 XHE sing 444 n n CAS H31 XHE sing 445 n n CAS H32 XHE sing 446 n n # _atom_sites.entry_id 8WY3 _atom_sites.fract_transf_matrix[1][1] 0.007122 _atom_sites.fract_transf_matrix[1][2] 0.004112 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 XHE A 1 201 1 XHE JIR . E 2 XHE B 1 201 2 XHE JIR . F 2 XHE C 1 201 3 XHE JIR . G 3 HOH A 1 301 8 HOH HOH . G 3 HOH A 2 302 5 HOH HOH . G 3 HOH A 3 303 14 HOH HOH . G 3 HOH A 4 304 12 HOH HOH . G 3 HOH A 5 305 9 HOH HOH . G 3 HOH A 6 306 11 HOH HOH . G 3 HOH A 7 307 6 HOH HOH . G 3 HOH A 8 308 7 HOH HOH . G 3 HOH A 9 309 10 HOH HOH . G 3 HOH A 10 310 1 HOH HOH . G 3 HOH A 11 311 4 HOH HOH . G 3 HOH A 12 312 19 HOH HOH . G 3 HOH A 13 313 3 HOH HOH . G 3 HOH A 14 314 13 HOH HOH . H 3 HOH B 1 301 15 HOH HOH . H 3 HOH B 2 302 18 HOH HOH . H 3 HOH B 3 303 16 HOH HOH . H 3 HOH B 4 304 17 HOH HOH . H 3 HOH B 5 305 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBI XHE . . . E 2 -57.441 17.435 16.217 1 80.61 ? CBI XHE 201 B 1 HETATM 2 C CBJ XHE . . . E 2 -56.331 16.504 15.869 1 81.35 ? CBJ XHE 201 B 1 HETATM 3 C CBH XHE . . . E 2 -56.845 17.516 14.904 1 75.11 ? CBH XHE 201 B 1 HETATM 4 N NBF XHE . . . E 2 -57.38 16.691 13.81 1 70.68 ? NBF XHE 201 B 1 HETATM 5 C C XHE . . . E 2 -56.838 16.839 12.631 1 60.07 ? C XHE 201 B 1 HETATM 6 O O XHE . . . E 2 -55.916 17.603 12.413 1 69.91 ? O XHE 201 B 1 HETATM 7 C CA XHE . . . E 2 -57.289 15.987 11.566 1 54.11 ? CA XHE 201 B 1 HETATM 8 N N XHE . . . E 2 -57.174 16.737 10.289 1 51.88 ? N XHE 201 B 1 HETATM 9 C CAV XHE . . . E 2 -57.535 16.184 9.117 1 53.73 ? CAV XHE 201 B 1 HETATM 10 C CAW XHE . . . E 2 -57.829 14.809 9.024 1 52.78 ? CAW XHE 201 B 1 HETATM 11 C CAX XHE . . . E 2 -58.263 14.211 7.864 1 48.12 ? CAX XHE 201 B 1 HETATM 12 O OBA XHE . . . E 2 -58.515 13.003 7.898 1 50.82 ? OBA XHE 201 B 1 HETATM 13 N NAY XHE . . . E 2 -58.396 14.957 6.771 1 46.23 ? NAY XHE 201 B 1 HETATM 14 C CBC XHE . . . E 2 -58.834 14.34 5.516 1 51.13 ? CBC XHE 201 B 1 HETATM 15 C CAZ XHE . . . E 2 -58.11 16.315 6.796 1 48.27 ? CAZ XHE 201 B 1 HETATM 16 C CAU XHE . . . E 2 -57.667 16.978 7.957 1 52.51 ? CAU XHE 201 B 1 HETATM 17 C CAA XHE . . . E 2 -57.426 18.374 7.81 1 53.46 ? CAA XHE 201 B 1 HETATM 18 C CAF XHE . . . E 2 -56.457 18.774 6.859 1 51.04 ? CAF XHE 201 B 1 HETATM 19 C CAE XHE . . . E 2 -56.179 20.128 6.593 1 47.34 ? CAE XHE 201 B 1 HETATM 20 C CAH XHE . . . E 2 -55.216 20.567 5.641 1 46.82 ? CAH XHE 201 B 1 HETATM 21 C CAI XHE . . . E 2 -54.168 21.473 6.29 1 48.43 ? CAI XHE 201 B 1 HETATM 22 C CAJ XHE . . . E 2 -55.991 21.316 4.527 1 42.72 ? CAJ XHE 201 B 1 HETATM 23 O OAK XHE . . . E 2 -54.424 19.502 5.049 1 48.97 ? OAK XHE 201 B 1 HETATM 24 C CAD XHE . . . E 2 -56.918 21.08 7.283 1 47.2 ? CAD XHE 201 B 1 HETATM 25 C CAC XHE . . . E 2 -57.86 20.719 8.22 1 48.14 ? CAC XHE 201 B 1 HETATM 26 C CAB XHE . . . E 2 -58.145 19.387 8.48 1 50.73 ? CAB XHE 201 B 1 HETATM 27 O OAG XHE . . . E 2 -59.104 18.988 9.368 1 52.09 ? OAG XHE 201 B 1 HETATM 28 C CAL XHE . . . E 2 -59.922 19.871 10.002 1 47.26 ? CAL XHE 201 B 1 HETATM 29 C CAM XHE . . . E 2 -61.196 20.093 9.508 1 47.84 ? CAM XHE 201 B 1 HETATM 30 C CAR XHE . . . E 2 -61.633 19.468 8.358 1 49.35 ? CAR XHE 201 B 1 HETATM 31 C CAN XHE . . . E 2 -62.013 20.995 10.17 1 52.65 ? CAN XHE 201 B 1 HETATM 32 C CAO XHE . . . E 2 -61.555 21.65 11.324 1 55.94 ? CAO XHE 201 B 1 HETATM 33 F FAT XHE . . . E 2 -62.505 22.696 12.139 1 72.93 ? FAT XHE 201 B 1 HETATM 34 C CAP XHE . . . E 2 -60.271 21.393 11.809 1 50.86 ? CAP XHE 201 B 1 HETATM 35 C CAQ XHE . . . E 2 -59.443 20.504 11.141 1 47.16 ? CAQ XHE 201 B 1 HETATM 36 C CAS XHE . . . E 2 -58.164 20.261 11.608 1 45.82 ? CAS XHE 201 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #