data_8WY3
#
_model_server_result.job_id            7diJGTLKqcznlPYIWIm3lw 
_model_server_result.datetime_utc      '2024-10-10 01:16:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    8WY3 
#
_exptl.entry_id    8WY3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              493.57 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-cyclopropyl-2-[[5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-2-oxidanylidene-pyridin-4-yl]amino]ethanamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8WY3 
_cell.length_a            140.409 
_cell.length_b            140.409 
_cell.length_c            134.482 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,C,E,F,H 1 1 
A,D,G 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -22.413667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C28 H32 F N3 O4' 
_chem_comp.formula_weight    493.57 
_chem_comp.id                XHE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-cyclopropyl-2-[[5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-2-oxidanylidene-pyridin-4-yl]amino]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OBA CAX XHE doub 376 n n 
CAX CAW XHE sing 377 n n 
CAX NAY XHE sing 378 n n 
CAW CAV XHE doub 379 n n 
CBC NAY XHE sing 380 n n 
NAY CAZ XHE sing 381 n n 
CBJ CBH XHE sing 382 n n 
CBJ CBI XHE sing 383 n n 
CA C XHE sing 384 n n 
CA N XHE sing 385 n n 
NBF C XHE sing 386 n n 
NBF CBH XHE sing 387 n n 
C O XHE doub 388 n n 
CAV N XHE sing 389 n n 
CAV CAU XHE sing 390 n n 
CBH CBI XHE sing 391 n n 
CAZ CAU XHE doub 392 n n 
CAU CAA XHE sing 393 n n 
CAA CAF XHE doub 394 n y 
CAA CAB XHE sing 395 n y 
CAF CAE XHE sing 396 n y 
OAK CAH XHE sing 397 n n 
OAG CAB XHE sing 398 n n 
OAG CAL XHE sing 399 n n 
CAB CAC XHE doub 400 n y 
CAS CAQ XHE sing 401 n n 
CAE CAH XHE sing 402 n n 
CAE CAD XHE doub 403 n y 
CAH CAI XHE sing 404 n n 
CAH CAJ XHE sing 405 n n 
CAL CAQ XHE doub 406 n y 
CAL CAM XHE sing 407 n y 
CAQ CAP XHE sing 408 n y 
CAR CAM XHE sing 409 n n 
CAC CAD XHE sing 410 n y 
CAM CAN XHE doub 411 n y 
CAP CAO XHE doub 412 n y 
CAN CAO XHE sing 413 n y 
CAO FAT XHE sing 414 n n 
CBI H1 XHE sing 415 n n 
CBI H2 XHE sing 416 n n 
CBJ H3 XHE sing 417 n n 
CBJ H4 XHE sing 418 n n 
CBH H5 XHE sing 419 n n 
NBF H6 XHE sing 420 n n 
CA H7 XHE sing 421 n n 
CA H8 XHE sing 422 n n 
N H9 XHE sing 423 n n 
CAW H10 XHE sing 424 n n 
CBC H11 XHE sing 425 n n 
CBC H12 XHE sing 426 n n 
CBC H13 XHE sing 427 n n 
CAZ H14 XHE sing 428 n n 
CAF H15 XHE sing 429 n n 
CAI H16 XHE sing 430 n n 
CAI H17 XHE sing 431 n n 
CAI H18 XHE sing 432 n n 
CAJ H19 XHE sing 433 n n 
CAJ H20 XHE sing 434 n n 
CAJ H21 XHE sing 435 n n 
OAK H22 XHE sing 436 n n 
CAD H23 XHE sing 437 n n 
CAC H24 XHE sing 438 n n 
CAR H25 XHE sing 439 n n 
CAR H26 XHE sing 440 n n 
CAR H27 XHE sing 441 n n 
CAN H28 XHE sing 442 n n 
CAP H29 XHE sing 443 n n 
CAS H30 XHE sing 444 n n 
CAS H31 XHE sing 445 n n 
CAS H32 XHE sing 446 n n 
#
_atom_sites.entry_id                     8WY3 
_atom_sites.fract_transf_matrix[1][1]    0.007122 
_atom_sites.fract_transf_matrix[1][2]    0.004112 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008224 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007436 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 XHE A 1 201 1 XHE JIR . 
E 2 XHE B 1 201 2 XHE JIR . 
F 2 XHE C 1 201 3 XHE JIR . 
G 3 HOH A 1 301 8 HOH HOH . 
G 3 HOH A 2 302 5 HOH HOH . 
G 3 HOH A 3 303 14 HOH HOH . 
G 3 HOH A 4 304 12 HOH HOH . 
G 3 HOH A 5 305 9 HOH HOH . 
G 3 HOH A 6 306 11 HOH HOH . 
G 3 HOH A 7 307 6 HOH HOH . 
G 3 HOH A 8 308 7 HOH HOH . 
G 3 HOH A 9 309 10 HOH HOH . 
G 3 HOH A 10 310 1 HOH HOH . 
G 3 HOH A 11 311 4 HOH HOH . 
G 3 HOH A 12 312 19 HOH HOH . 
G 3 HOH A 13 313 3 HOH HOH . 
G 3 HOH A 14 314 13 HOH HOH . 
H 3 HOH B 1 301 15 HOH HOH . 
H 3 HOH B 2 302 18 HOH HOH . 
H 3 HOH B 3 303 16 HOH HOH . 
H 3 HOH B 4 304 17 HOH HOH . 
H 3 HOH B 5 305 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBI XHE . . . F 2 -16.78 15.573 -18.311 1 101.03 ? CBI XHE 201 C 1 
HETATM 2 C CBJ XHE . . . F 2 -16.724 15.804 -19.761 1 100.98 ? CBJ XHE 201 C 1 
HETATM 3 C CBH XHE . . . F 2 -17.976 16.097 -19.036 1 107.53 ? CBH XHE 201 C 1 
HETATM 4 N NBF XHE . . . F 2 -19.079 15.119 -19.257 1 119.35 ? NBF XHE 201 C 1 
HETATM 5 C C XHE . . . F 2 -20.416 15.411 -19.209 1 107.94 ? C XHE 201 C 1 
HETATM 6 O O XHE . . . F 2 -20.87 16.539 -18.976 1 99.69 ? O XHE 201 C 1 
HETATM 7 C CA XHE . . . F 2 -21.343 14.202 -19.471 1 94.2 ? CA XHE 201 C 1 
HETATM 8 N N XHE . . . F 2 -22.709 14.484 -18.9 1 87.85 ? N XHE 201 C 1 
HETATM 9 C CAV XHE . . . F 2 -23.847 13.787 -19.166 1 73.62 ? CAV XHE 201 C 1 
HETATM 10 C CAW XHE . . . F 2 -23.966 13.047 -20.365 1 75.36 ? CAW XHE 201 C 1 
HETATM 11 C CAX XHE . . . F 2 -25.12 12.331 -20.69 1 75.67 ? CAX XHE 201 C 1 
HETATM 12 O OBA XHE . . . F 2 -25.224 11.678 -21.744 1 69.7 ? OBA XHE 201 C 1 
HETATM 13 N NAY XHE . . . F 2 -26.141 12.36 -19.825 1 76.93 ? NAY XHE 201 C 1 
HETATM 14 C CBC XHE . . . F 2 -27.363 11.583 -20.202 1 85.9 ? CBC XHE 201 C 1 
HETATM 15 C CAZ XHE . . . F 2 -26.069 13.088 -18.608 1 61.46 ? CAZ XHE 201 C 1 
HETATM 16 C CAU XHE . . . F 2 -24.945 13.828 -18.244 1 64.77 ? CAU XHE 201 C 1 
HETATM 17 C CAA XHE . . . F 2 -25.07 14.524 -16.99 1 66.9 ? CAA XHE 201 C 1 
HETATM 18 C CAF XHE . . . F 2 -26.171 15.382 -16.775 1 65.09 ? CAF XHE 201 C 1 
HETATM 19 C CAE XHE . . . F 2 -26.394 16.082 -15.552 1 64.04 ? CAE XHE 201 C 1 
HETATM 20 C CAH XHE . . . F 2 -27.52 16.932 -15.422 1 62.81 ? CAH XHE 201 C 1 
HETATM 21 C CAI XHE . . . F 2 -27.004 18.363 -15.198 1 67.54 ? CAI XHE 201 C 1 
HETATM 22 C CAJ XHE . . . F 2 -28.394 16.558 -14.217 1 53.74 ? CAJ XHE 201 C 1 
HETATM 23 O OAK XHE . . . F 2 -28.318 16.895 -16.659 1 62.15 ? OAK XHE 201 C 1 
HETATM 24 C CAD XHE . . . F 2 -25.475 15.95 -14.486 1 60.04 ? CAD XHE 201 C 1 
HETATM 25 C CAC XHE . . . F 2 -24.377 15.115 -14.666 1 58.96 ? CAC XHE 201 C 1 
HETATM 26 C CAB XHE . . . F 2 -24.185 14.417 -15.896 1 65.24 ? CAB XHE 201 C 1 
HETATM 27 O OAG XHE . . . F 2 -23.15 13.589 -16.163 1 69.43 ? OAG XHE 201 C 1 
HETATM 28 C CAL XHE . . . F 2 -22.272 13.311 -15.177 1 77.84 ? CAL XHE 201 C 1 
HETATM 29 C CAM XHE . . . F 2 -22.49 12.139 -14.469 1 72.64 ? CAM XHE 201 C 1 
HETATM 30 C CAR XHE . . . F 2 -23.548 11.298 -14.757 1 73.61 ? CAR XHE 201 C 1 
HETATM 31 C CAN XHE . . . F 2 -21.584 11.813 -13.475 1 74.29 ? CAN XHE 201 C 1 
HETATM 32 C CAO XHE . . . F 2 -20.507 12.663 -13.198 1 77.02 ? CAO XHE 201 C 1 
HETATM 33 F FAT XHE . . . F 2 -19.759 12.364 -12.31 1 77 ? FAT XHE 201 C 1 
HETATM 34 C CAP XHE . . . F 2 -20.292 13.85 -13.898 1 76.33 ? CAP XHE 201 C 1 
HETATM 35 C CAQ XHE . . . F 2 -21.185 14.191 -14.92 1 87.01 ? CAQ XHE 201 C 1 
HETATM 36 C CAS XHE . . . F 2 -20.987 15.398 -15.633 1 88.86 ? CAS XHE 201 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#