data_8WYG # _model_server_result.job_id HbjxlyZIGZP56GpIByQ64A _model_server_result.datetime_utc '2024-10-10 01:17:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8WYG # _exptl.entry_id 8WYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 551.649 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-2-oxidanylidene-pyridin-4-yl]amino]-~{N}-(4-oxidanylcyclohexyl)ethanamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WYG _cell.length_a 91.782 _cell.length_b 95.497 _cell.length_c 109.08 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C31 H38 F N3 O5' _chem_comp.formula_weight 551.649 _chem_comp.id XHN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-2-oxidanylidene-pyridin-4-yl]amino]-~{N}-(4-oxidanylcyclohexyl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAH XHN sing 376 n n OAK CAH XHN sing 377 n n CAH CAJ XHN sing 378 n n CAH CAE XHN sing 379 n n CAE CAF XHN doub 380 n y CAE CAD XHN sing 381 n y CAF CAA XHN sing 382 n y CAD CAC XHN doub 383 n y O C XHN doub 384 n n CBJ CBI XHN sing 385 n n CBJ CBK XHN sing 386 n n CAA CAU XHN sing 387 n n CAA CAB XHN doub 388 n y CAC CAB XHN sing 389 n y C NBF XHN sing 390 n n C CA XHN sing 391 n n N CAV XHN sing 392 n n N CA XHN sing 393 n n CBI CBH XHN sing 394 n n CBH NBF XHN sing 395 n n CBH CBM XHN sing 396 n n CAU CAV XHN sing 397 n n CAU CAZ XHN doub 398 n n CAV CAW XHN doub 399 n n CAB OAG XHN sing 400 n n OBN CBK XHN sing 401 n n CAZ NAY XHN sing 402 n n CBL CBK XHN sing 403 n n CBL CBM XHN sing 404 n n CAW CAX XHN sing 405 n n CAR CAM XHN sing 406 n n NAY CAX XHN sing 407 n n NAY CBC XHN sing 408 n n CAX OBA XHN doub 409 n n OAG CAL XHN sing 410 n n CAM CAL XHN doub 411 n y CAM CAN XHN sing 412 n y CAL CAQ XHN sing 413 n y CAN CAO XHN doub 414 n y CAQ CAS XHN sing 415 n n CAQ CAP XHN doub 416 n y CAO CAP XHN sing 417 n y CAO FAT XHN sing 418 n n N H1 XHN sing 419 n n CBI H2 XHN sing 420 n n CBI H3 XHN sing 421 n n CBJ H4 XHN sing 422 n n CBJ H5 XHN sing 423 n n CBK H6 XHN sing 424 n n OBN H7 XHN sing 425 n n CBL H8 XHN sing 426 n n CBL H9 XHN sing 427 n n CBM H10 XHN sing 428 n n CBM H11 XHN sing 429 n n CBH H12 XHN sing 430 n n NBF H13 XHN sing 431 n n CA H14 XHN sing 432 n n CA H15 XHN sing 433 n n CAW H16 XHN sing 434 n n CBC H17 XHN sing 435 n n CBC H18 XHN sing 436 n n CBC H19 XHN sing 437 n n CAZ H20 XHN sing 438 n n CAF H21 XHN sing 439 n n CAI H22 XHN sing 440 n n CAI H23 XHN sing 441 n n CAI H24 XHN sing 442 n n CAJ H25 XHN sing 443 n n CAJ H26 XHN sing 444 n n CAJ H27 XHN sing 445 n n OAK H28 XHN sing 446 n n CAD H29 XHN sing 447 n n CAC H30 XHN sing 448 n n CAR H31 XHN sing 449 n n CAR H32 XHN sing 450 n n CAR H33 XHN sing 451 n n CAN H34 XHN sing 452 n n CAP H35 XHN sing 453 n n CAS H36 XHN sing 454 n n CAS H37 XHN sing 455 n n CAS H38 XHN sing 456 n n # _atom_sites.entry_id 8WYG _atom_sites.fract_transf_matrix[1][1] 0.010895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XHN A 1 501 1 XHN JIX . F 2 XHN B 1 501 2 XHN JIX . G 2 XHN C 1 501 3 XHN JIX . H 2 XHN D 1 501 4 XHN JIX . I 3 HOH C 1 601 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O XHN . . . E 2 21.675 -14.637 -23.403 1 38.22 ? O XHN 501 A 1 HETATM 2 N N XHN . . . E 2 19.119 -15.421 -24.141 1 36.53 ? N XHN 501 A 1 HETATM 3 C C XHN . . . E 2 21.424 -15.835 -23.326 1 35.6 ? C XHN 501 A 1 HETATM 4 C CBI XHN . . . E 2 24.636 -17.103 -22.338 1 39.94 ? CBI XHN 501 A 1 HETATM 5 C CBJ XHN . . . E 2 25.895 -16.504 -21.757 1 40.78 ? CBJ XHN 501 A 1 HETATM 6 C CBK XHN . . . E 2 25.73 -16.554 -20.214 1 42.26 ? CBK XHN 501 A 1 HETATM 7 O OBN XHN . . . E 2 26.911 -16 -19.573 1 40.47 ? OBN XHN 501 A 1 HETATM 8 C CBL XHN . . . E 2 24.448 -15.777 -19.736 1 43.14 ? CBL XHN 501 A 1 HETATM 9 C CBM XHN . . . E 2 23.193 -16.322 -20.448 1 41.17 ? CBM XHN 501 A 1 HETATM 10 C CBH XHN . . . E 2 23.422 -16.245 -21.964 1 39.66 ? CBH XHN 501 A 1 HETATM 11 N NBF XHN . . . E 2 22.21 -16.693 -22.679 1 36.74 ? NBF XHN 501 A 1 HETATM 12 C CA XHN . . . E 2 20.206 -16.439 -23.979 1 35.93 ? CA XHN 501 A 1 HETATM 13 C CAV XHN . . . E 2 17.899 -15.67 -24.688 1 34.54 ? CAV XHN 501 A 1 HETATM 14 C CAW XHN . . . E 2 17.59 -16.94 -25.189 1 36.88 ? CAW XHN 501 A 1 HETATM 15 C CAX XHN . . . E 2 16.353 -17.234 -25.76 1 37.76 ? CAX XHN 501 A 1 HETATM 16 O OBA XHN . . . E 2 16.058 -18.367 -26.195 1 39 ? OBA XHN 501 A 1 HETATM 17 N NAY XHN . . . E 2 15.461 -16.26 -25.825 1 36.56 ? NAY XHN 501 A 1 HETATM 18 C CBC XHN . . . E 2 14.13 -16.574 -26.407 1 39.64 ? CBC XHN 501 A 1 HETATM 19 C CAZ XHN . . . E 2 15.733 -14.98 -25.346 1 34.26 ? CAZ XHN 501 A 1 HETATM 20 C CAU XHN . . . E 2 16.93 -14.643 -24.767 1 33.4 ? CAU XHN 501 A 1 HETATM 21 C CAA XHN . . . E 2 17.05 -13.28 -24.386 1 34.63 ? CAA XHN 501 A 1 HETATM 22 C CAF XHN . . . E 2 17.108 -12.286 -25.402 1 33.32 ? CAF XHN 501 A 1 HETATM 23 C CAE XHN . . . E 2 17.23 -10.893 -25.14 1 32.72 ? CAE XHN 501 A 1 HETATM 24 C CAH XHN . . . E 2 17.303 -9.889 -26.2 1 32.27 ? CAH XHN 501 A 1 HETATM 25 C CAI XHN . . . E 2 18.754 -9.402 -26.405 1 32.07 ? CAI XHN 501 A 1 HETATM 26 C CAJ XHN . . . E 2 16.461 -8.658 -25.865 1 29.74 ? CAJ XHN 501 A 1 HETATM 27 O OAK XHN . . . E 2 16.859 -10.391 -27.51 1 32.49 ? OAK XHN 501 A 1 HETATM 28 C CAD XHN . . . E 2 17.315 -10.512 -23.795 1 31.84 ? CAD XHN 501 A 1 HETATM 29 C CAC XHN . . . E 2 17.26 -11.475 -22.794 1 33.51 ? CAC XHN 501 A 1 HETATM 30 C CAB XHN . . . E 2 17.116 -12.849 -23.064 1 34.98 ? CAB XHN 501 A 1 HETATM 31 O OAG XHN . . . E 2 17.055 -13.847 -22.123 1 35.79 ? OAG XHN 501 A 1 HETATM 32 C CAL XHN . . . E 2 17.237 -13.547 -20.798 1 38.8 ? CAL XHN 501 A 1 HETATM 33 C CAM XHN . . . E 2 16.098 -13.358 -19.969 1 39.35 ? CAM XHN 501 A 1 HETATM 34 C CAR XHN . . . E 2 14.773 -13.456 -20.426 1 36.96 ? CAR XHN 501 A 1 HETATM 35 C CAN XHN . . . E 2 16.321 -13.065 -18.616 1 41.62 ? CAN XHN 501 A 1 HETATM 36 C CAO XHN . . . E 2 17.635 -12.964 -18.116 1 43.74 ? CAO XHN 501 A 1 HETATM 37 F FAT XHN . . . E 2 17.837 -12.694 -16.903 1 46.01 ? FAT XHN 501 A 1 HETATM 38 C CAP XHN . . . E 2 18.753 -13.153 -18.943 1 43.44 ? CAP XHN 501 A 1 HETATM 39 C CAQ XHN . . . E 2 18.56 -13.437 -20.303 1 40.68 ? CAQ XHN 501 A 1 HETATM 40 C CAS XHN . . . E 2 19.675 -13.621 -21.115 1 41.07 ? CAS XHN 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #