data_8WYW # _model_server_result.job_id gvsgB4pN4kcZn4figO3Tpg _model_server_result.datetime_utc '2025-01-10 08:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8WYW # _exptl.entry_id 8WYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.527 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SKI-O-592 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.034 _cell.angle_beta 90.027 _cell.angle_gamma 94.811 _cell.entry_id 8WYW _cell.length_a 39.719 _cell.length_b 39.602 _cell.length_c 88.355 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C25 H27 N7 O3' _chem_comp.formula_weight 473.527 _chem_comp.id XFB _chem_comp.mon_nstd_flag . _chem_comp.name SKI-O-592 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms cyclopropyl-[1-methyl-5-[[4-[3-methyl-4-[[(4S)-4-oxidanyl-1,2-oxazolidin-2-yl]methyl]pyrazol-1-yl]pyrimidin-2-yl]amino]indol-3-yl]methanone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C24 XFB sing 389 n n C23 O2 XFB sing 390 n n C24 O3 XFB sing 391 n n C24 C25 XFB sing 392 n n O2 N7 XFB sing 393 n n C25 N7 XFB sing 394 n n C21 C20 XFB sing 395 n n N7 C22 XFB sing 396 n n C22 C19 XFB sing 397 n n C20 C19 XFB sing 398 n y C20 N6 XFB doub 399 n y C19 C18 XFB doub 400 n y C11 C12 XFB sing 401 n n C11 C10 XFB sing 402 n n N6 N5 XFB sing 403 n y C18 N5 XFB sing 404 n y C12 C10 XFB sing 405 n n N5 C15 XFB sing 406 n n C10 C9 XFB sing 407 n n O1 C9 XFB doub 408 n n C9 C8 XFB sing 409 n n C15 C16 XFB doub 410 n y C15 N3 XFB sing 411 n y C16 C17 XFB sing 412 n y N3 C14 XFB doub 413 n y C8 C7 XFB doub 414 n y C8 C6 XFB sing 415 n y C17 N4 XFB doub 416 n y C7 N1 XFB sing 417 n y C5 C6 XFB doub 418 n y C5 C4 XFB sing 419 n y C6 C1 XFB sing 420 n y C14 N4 XFB sing 421 n y C14 N2 XFB sing 422 n n N1 C1 XFB sing 423 n y N1 C13 XFB sing 424 n n C4 N2 XFB sing 425 n n C4 C3 XFB doub 426 n y C1 C2 XFB doub 427 n y C2 C3 XFB sing 428 n y C10 H1 XFB sing 429 n n C11 H2 XFB sing 430 n n C11 H3 XFB sing 431 n n C12 H4 XFB sing 432 n n C12 H5 XFB sing 433 n n C13 H6 XFB sing 434 n n C13 H7 XFB sing 435 n n C13 H8 XFB sing 436 n n C16 H9 XFB sing 437 n n C17 H10 XFB sing 438 n n C18 H11 XFB sing 439 n n C2 H12 XFB sing 440 n n C21 H13 XFB sing 441 n n C21 H14 XFB sing 442 n n C21 H15 XFB sing 443 n n C22 H16 XFB sing 444 n n C22 H17 XFB sing 445 n n C23 H18 XFB sing 446 n n C23 H19 XFB sing 447 n n C24 H20 XFB sing 448 n n C25 H21 XFB sing 449 n n C25 H22 XFB sing 450 n n C3 H23 XFB sing 451 n n C5 H24 XFB sing 452 n n C7 H25 XFB sing 453 n n N2 H26 XFB sing 454 n n O3 H27 XFB sing 455 n n # _atom_sites.entry_id 8WYW _atom_sites.fract_transf_matrix[1][1] 0.025177 _atom_sites.fract_transf_matrix[1][2] 0.002119 _atom_sites.fract_transf_matrix[1][3] 0.000013 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025341 _atom_sites.fract_transf_matrix[2][3] 0.000016 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XFB A 1 701 701 XFB UNK . D 3 GOL A 1 702 801 GOL GOL . E 2 XFB B 1 701 701 XFB UNK . F 4 HOH A 1 801 35 HOH HOH . F 4 HOH A 2 802 28 HOH HOH . F 4 HOH A 3 803 89 HOH HOH . F 4 HOH A 4 804 79 HOH HOH . F 4 HOH A 5 805 36 HOH HOH . F 4 HOH A 6 806 60 HOH HOH . F 4 HOH A 7 807 77 HOH HOH . F 4 HOH A 8 808 3 HOH HOH . F 4 HOH A 9 809 6 HOH HOH . F 4 HOH A 10 810 88 HOH HOH . F 4 HOH A 11 811 32 HOH HOH . F 4 HOH A 12 812 104 HOH HOH . F 4 HOH A 13 813 30 HOH HOH . F 4 HOH A 14 814 4 HOH HOH . F 4 HOH A 15 815 98 HOH HOH . F 4 HOH A 16 816 65 HOH HOH . F 4 HOH A 17 817 64 HOH HOH . F 4 HOH A 18 818 42 HOH HOH . F 4 HOH A 19 819 37 HOH HOH . F 4 HOH A 20 820 63 HOH HOH . F 4 HOH A 21 821 33 HOH HOH . F 4 HOH A 22 822 25 HOH HOH . F 4 HOH A 23 823 90 HOH HOH . F 4 HOH A 24 824 91 HOH HOH . F 4 HOH A 25 825 7 HOH HOH . F 4 HOH A 26 826 92 HOH HOH . F 4 HOH A 27 827 76 HOH HOH . F 4 HOH A 28 828 68 HOH HOH . F 4 HOH A 29 829 5 HOH HOH . F 4 HOH A 30 830 112 HOH HOH . F 4 HOH A 31 831 40 HOH HOH . F 4 HOH A 32 832 14 HOH HOH . F 4 HOH A 33 833 38 HOH HOH . F 4 HOH A 34 834 111 HOH HOH . F 4 HOH A 35 835 87 HOH HOH . F 4 HOH A 36 836 75 HOH HOH . F 4 HOH A 37 837 105 HOH HOH . F 4 HOH A 38 838 27 HOH HOH . F 4 HOH A 39 839 69 HOH HOH . F 4 HOH A 40 840 10 HOH HOH . F 4 HOH A 41 841 39 HOH HOH . F 4 HOH A 42 842 78 HOH HOH . F 4 HOH A 43 843 29 HOH HOH . F 4 HOH A 44 844 23 HOH HOH . F 4 HOH A 45 845 82 HOH HOH . F 4 HOH A 46 846 31 HOH HOH . F 4 HOH A 47 847 41 HOH HOH . F 4 HOH A 48 848 86 HOH HOH . F 4 HOH A 49 849 34 HOH HOH . F 4 HOH A 50 850 107 HOH HOH . F 4 HOH A 51 851 80 HOH HOH . F 4 HOH A 52 852 109 HOH HOH . F 4 HOH A 53 853 44 HOH HOH . F 4 HOH A 54 854 110 HOH HOH . F 4 HOH A 55 855 108 HOH HOH . F 4 HOH A 56 856 61 HOH HOH . G 4 HOH B 1 801 67 HOH HOH . G 4 HOH B 2 802 46 HOH HOH . G 4 HOH B 3 803 21 HOH HOH . G 4 HOH B 4 804 8 HOH HOH . G 4 HOH B 5 805 73 HOH HOH . G 4 HOH B 6 806 15 HOH HOH . G 4 HOH B 7 807 17 HOH HOH . G 4 HOH B 8 808 22 HOH HOH . G 4 HOH B 9 809 1 HOH HOH . G 4 HOH B 10 810 85 HOH HOH . G 4 HOH B 11 811 13 HOH HOH . G 4 HOH B 12 812 11 HOH HOH . G 4 HOH B 13 813 45 HOH HOH . G 4 HOH B 14 814 50 HOH HOH . G 4 HOH B 15 815 106 HOH HOH . G 4 HOH B 16 816 48 HOH HOH . G 4 HOH B 17 817 12 HOH HOH . G 4 HOH B 18 818 72 HOH HOH . G 4 HOH B 19 819 53 HOH HOH . G 4 HOH B 20 820 2 HOH HOH . G 4 HOH B 21 821 100 HOH HOH . G 4 HOH B 22 822 59 HOH HOH . G 4 HOH B 23 823 26 HOH HOH . G 4 HOH B 24 824 24 HOH HOH . G 4 HOH B 25 825 55 HOH HOH . G 4 HOH B 26 826 19 HOH HOH . G 4 HOH B 27 827 52 HOH HOH . G 4 HOH B 28 828 102 HOH HOH . G 4 HOH B 29 829 20 HOH HOH . G 4 HOH B 30 830 16 HOH HOH . G 4 HOH B 31 831 99 HOH HOH . G 4 HOH B 32 832 83 HOH HOH . G 4 HOH B 33 833 54 HOH HOH . G 4 HOH B 34 834 56 HOH HOH . G 4 HOH B 35 835 62 HOH HOH . G 4 HOH B 36 836 9 HOH HOH . G 4 HOH B 37 837 58 HOH HOH . G 4 HOH B 38 838 51 HOH HOH . G 4 HOH B 39 839 103 HOH HOH . G 4 HOH B 40 840 49 HOH HOH . G 4 HOH B 41 841 18 HOH HOH . G 4 HOH B 42 842 74 HOH HOH . G 4 HOH B 43 843 93 HOH HOH . G 4 HOH B 44 844 101 HOH HOH . G 4 HOH B 45 845 94 HOH HOH . G 4 HOH B 46 846 57 HOH HOH . G 4 HOH B 47 847 97 HOH HOH . G 4 HOH B 48 848 96 HOH HOH . G 4 HOH B 49 849 84 HOH HOH . G 4 HOH B 50 850 95 HOH HOH . G 4 HOH B 51 851 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XFB . . . C 2 -6.949 1.039 35.556 1 33.81 ? C1 XFB 701 A 1 HETATM 2 C C10 XFB . . . C 2 -10.63 0.878 32.333 1 29.21 ? C10 XFB 701 A 1 HETATM 3 C C11 XFB . . . C 2 -10.779 0.805 30.812 1 45.92 ? C11 XFB 701 A 1 HETATM 4 C C12 XFB . . . C 2 -11.791 0.084 31.721 1 36.57 ? C12 XFB 701 A 1 HETATM 5 C C13 XFB . . . C 2 -7.477 3.297 36.061 1 40.3 ? C13 XFB 701 A 1 HETATM 6 C C14 XFB . . . C 2 -5.339 -3.936 34.728 1 29.5 ? C14 XFB 701 A 1 HETATM 7 C C15 XFB . . . C 2 -6.478 -5.074 33.058 1 33.27 ? C15 XFB 701 A 1 HETATM 8 C C16 XFB . . . C 2 -5.671 -6.156 33.242 1 31.93 ? C16 XFB 701 A 1 HETATM 9 C C17 XFB . . . C 2 -4.682 -6.103 34.174 1 28.91 ? C17 XFB 701 A 1 HETATM 10 C C18 XFB . . . C 2 -8.448 -4.224 31.705 1 31.79 ? C18 XFB 701 A 1 HETATM 11 C C19 XFB . . . C 2 -9.243 -4.78 30.715 1 39.07 ? C19 XFB 701 A 1 HETATM 12 C C2 XFB . . . C 2 -5.899 0.778 36.389 1 34.33 ? C2 XFB 701 A 1 HETATM 13 C C20 XFB . . . C 2 -8.797 -6.074 30.506 1 34.1 ? C20 XFB 701 A 1 HETATM 14 C C21 XFB . . . C 2 -9.391 -7.082 29.503 1 39.87 ? C21 XFB 701 A 1 HETATM 15 C C22 XFB . . . C 2 -10.469 -4.169 29.942 1 40.51 ? C22 XFB 701 A 1 HETATM 16 C C23 XFB . . . C 2 -10.962 -1.525 27.796 1 51.95 ? C23 XFB 701 A 1 HETATM 17 C C24 XFB . . . C 2 -9.526 -1.679 27.86 1 50.23 ? C24 XFB 701 A 1 HETATM 18 C C25 XFB . . . C 2 -9.185 -2.646 28.93 1 47.94 ? C25 XFB 701 A 1 HETATM 19 C C3 XFB . . . C 2 -5.312 -0.475 36.393 1 29.72 ? C3 XFB 701 A 1 HETATM 20 C C4 XFB . . . C 2 -5.78 -1.481 35.523 1 28.59 ? C4 XFB 701 A 1 HETATM 21 C C5 XFB . . . C 2 -6.883 -1.234 34.652 1 26.41 ? C5 XFB 701 A 1 HETATM 22 C C6 XFB . . . C 2 -7.47 0.046 34.667 1 30.05 ? C6 XFB 701 A 1 HETATM 23 C C7 XFB . . . C 2 -8.633 2.007 34.471 1 32.49 ? C7 XFB 701 A 1 HETATM 24 C C8 XFB . . . C 2 -8.573 0.72 33.972 1 33.24 ? C8 XFB 701 A 1 HETATM 25 C C9 XFB . . . C 2 -9.458 0.061 32.904 1 33.16 ? C9 XFB 701 A 1 HETATM 26 N N1 XFB . . . C 2 -7.715 2.049 35.312 1 34.35 ? N1 XFB 701 A 1 HETATM 27 N N2 XFB . . . C 2 -5.101 -2.777 35.584 1 31.64 ? N2 XFB 701 A 1 HETATM 28 N N3 XFB . . . C 2 -6.321 -3.983 33.799 1 34.01 ? N3 XFB 701 A 1 HETATM 29 N N4 XFB . . . C 2 -4.524 -5.003 34.901 1 30.37 ? N4 XFB 701 A 1 HETATM 30 N N5 XFB . . . C 2 -7.534 -5.159 32.053 1 39.12 ? N5 XFB 701 A 1 HETATM 31 N N6 XFB . . . C 2 -7.759 -6.313 31.306 1 32.22 ? N6 XFB 701 A 1 HETATM 32 N N7 XFB . . . C 2 -10.364 -2.981 29.509 1 48.84 ? N7 XFB 701 A 1 HETATM 33 O O1 XFB . . . C 2 -9.236 -1.062 32.537 1 33.92 ? O1 XFB 701 A 1 HETATM 34 O O2 XFB . . . C 2 -11.422 -2.653 28.615 1 64.38 ? O2 XFB 701 A 1 HETATM 35 O O3 XFB . . . C 2 -8.865 -0.373 28.106 1 40.28 ? O3 XFB 701 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 71 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 1081 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #