data_8WZH
#
_model_server_result.job_id            Ph_d0lsCHZGKL3jaGWhnNg 
_model_server_result.datetime_utc      '2024-11-12 20:42:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wzh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3002}' 
#
_entry.id    8WZH 
#
_exptl.entry_id    8WZH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WZH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 B TYR 358 1_555 E FE HEM . B HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc2 B OH TYR 358 A TYR 358 1_555 G FE HEM . A HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? 
metalc ? metalc3 C OH TYR 358 C TYR 358 1_555 I FE HEM . C HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc4 D OH TYR 358 D TYR 358 1_555 K FE HEM . D HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 317 n n 
PA O2A NDP sing 318 n n 
PA O5B NDP sing 319 n n 
PA O3 NDP sing 320 n n 
O2A HOA2 NDP sing 321 n n 
O5B C5B NDP sing 322 n n 
C5B C4B NDP sing 323 n n 
C5B H51A NDP sing 324 n n 
C5B H52A NDP sing 325 n n 
C4B O4B NDP sing 326 n n 
C4B C3B NDP sing 327 n n 
C4B H4B NDP sing 328 n n 
O4B C1B NDP sing 329 n n 
C3B O3B NDP sing 330 n n 
C3B C2B NDP sing 331 n n 
C3B H3B NDP sing 332 n n 
O3B HO3A NDP sing 333 n n 
C2B O2B NDP sing 334 n n 
C2B C1B NDP sing 335 n n 
C2B H2B NDP sing 336 n n 
O2B P2B NDP sing 337 n n 
C1B N9A NDP sing 338 n n 
C1B H1B NDP sing 339 n n 
N9A C8A NDP sing 340 n y 
N9A C4A NDP sing 341 n y 
C8A N7A NDP doub 342 n y 
C8A H8A NDP sing 343 n n 
N7A C5A NDP sing 344 n y 
C5A C6A NDP sing 345 n y 
C5A C4A NDP doub 346 n y 
C6A N6A NDP sing 347 n n 
C6A N1A NDP doub 348 n y 
N6A H61A NDP sing 349 n n 
N6A H62A NDP sing 350 n n 
N1A C2A NDP sing 351 n y 
C2A N3A NDP doub 352 n y 
C2A H2A NDP sing 353 n n 
N3A C4A NDP sing 354 n y 
O3 PN NDP sing 355 n n 
PN O1N NDP doub 356 n n 
PN O2N NDP sing 357 n n 
PN O5D NDP sing 358 n n 
O2N H21N NDP sing 359 n n 
O5D C5D NDP sing 360 n n 
C5D C4D NDP sing 361 n n 
C5D H51N NDP sing 362 n n 
C5D H52N NDP sing 363 n n 
C4D O4D NDP sing 364 n n 
C4D C3D NDP sing 365 n n 
C4D H4D NDP sing 366 n n 
O4D C1D NDP sing 367 n n 
C3D O3D NDP sing 368 n n 
C3D C2D NDP sing 369 n n 
C3D H3D NDP sing 370 n n 
O3D HO3N NDP sing 371 n n 
C2D O2D NDP sing 372 n n 
C2D C1D NDP sing 373 n n 
C2D H2D NDP sing 374 n n 
O2D HO2N NDP sing 375 n n 
C1D N1N NDP sing 376 n n 
C1D H1D NDP sing 377 n n 
N1N C2N NDP sing 378 n n 
N1N C6N NDP sing 379 n n 
C2N C3N NDP doub 380 n n 
C2N H2N NDP sing 381 n n 
C3N C7N NDP sing 382 n n 
C3N C4N NDP sing 383 n n 
C7N O7N NDP doub 384 n n 
C7N N7N NDP sing 385 n n 
N7N H71N NDP sing 386 n n 
N7N H72N NDP sing 387 n n 
C4N C5N NDP sing 388 n n 
C4N H41N NDP sing 389 n n 
C4N H42N NDP sing 390 n n 
C5N C6N NDP doub 391 n n 
C5N H5N NDP sing 392 n n 
C6N H6N NDP sing 393 n n 
P2B O1X NDP doub 394 n n 
P2B O2X NDP sing 395 n n 
P2B O3X NDP sing 396 n n 
O2X HOP2 NDP sing 397 n n 
O3X HOP3 NDP sing 398 n n 
#
_atom_sites.entry_id                     8WZH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM B 1 3001 3001 HEM HEM . 
F 3 NDP B 1 3002 4001 NDP NDP . 
G 2 HEM A 1 3001 3001 HEM HEM . 
H 3 NDP A 1 3002 4001 NDP NDP . 
I 2 HEM C 1 3001 3001 HEM HEM . 
J 3 NDP C 1 3002 4001 NDP NDP . 
K 2 HEM D 1 3001 3001 HEM HEM . 
L 3 NDP D 1 3002 4001 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . F 3 103.439 170.814 147.635 1 164.37 ? PA NDP 3002 B 1 
HETATM 2 O O1A NDP . . . F 3 103.392 172.043 146.79 1 164.27 ? O1A NDP 3002 B 1 
HETATM 3 O O2A NDP . . . F 3 102.395 170.566 148.674 1 164.29 ? O2A NDP 3002 B 1 
HETATM 4 O O5B NDP . . . F 3 104.874 170.709 148.304 1 164.43 ? O5B NDP 3002 B 1 
HETATM 5 C C5B NDP . . . F 3 105.838 171.405 147.524 1 164.53 ? C5B NDP 3002 B 1 
HETATM 6 C C4B NDP . . . F 3 106.963 170.45 147.333 1 164.44 ? C4B NDP 3002 B 1 
HETATM 7 O O4B NDP . . . F 3 107.796 170.905 146.238 1 164.28 ? O4B NDP 3002 B 1 
HETATM 8 C C3B NDP . . . F 3 107.876 170.352 148.559 1 164.58 ? C3B NDP 3002 B 1 
HETATM 9 O O3B NDP . . . F 3 108.263 169.005 148.77 1 164.46 ? O3B NDP 3002 B 1 
HETATM 10 C C2B NDP . . . F 3 109.027 171.249 148.155 1 164.64 ? C2B NDP 3002 B 1 
HETATM 11 O O2B NDP . . . F 3 110.22 170.896 148.842 1 165.33 ? O2B NDP 3002 B 1 
HETATM 12 C C1B NDP . . . F 3 109.129 170.906 146.68 1 164.2 ? C1B NDP 3002 B 1 
HETATM 13 N N9A NDP . . . F 3 109.896 171.873 145.907 1 163.78 ? N9A NDP 3002 B 1 
HETATM 14 C C8A NDP . . . F 3 109.708 173.233 145.896 1 163.78 ? C8A NDP 3002 B 1 
HETATM 15 N N7A NDP . . . F 3 110.545 173.867 145.115 1 163.59 ? N7A NDP 3002 B 1 
HETATM 16 C C5A NDP . . . F 3 111.341 172.865 144.58 1 163.42 ? C5A NDP 3002 B 1 
HETATM 17 C C6A NDP . . . F 3 112.422 172.903 143.676 1 163.58 ? C6A NDP 3002 B 1 
HETATM 18 N N6A NDP . . . F 3 112.887 174.031 143.147 1 163.54 ? N6A NDP 3002 B 1 
HETATM 19 N N1A NDP . . . F 3 113.006 171.724 143.34 1 163.77 ? N1A NDP 3002 B 1 
HETATM 20 C C2A NDP . . . F 3 112.523 170.596 143.883 1 163.73 ? C2A NDP 3002 B 1 
HETATM 21 N N3A NDP . . . F 3 111.516 170.441 144.745 1 163.55 ? N3A NDP 3002 B 1 
HETATM 22 C C4A NDP . . . F 3 110.955 171.626 145.061 1 163.48 ? C4A NDP 3002 B 1 
HETATM 23 O O3 NDP . . . F 3 103.405 169.614 146.575 1 164.18 ? O3 NDP 3002 B 1 
HETATM 24 P PN NDP . . . F 3 101.94 169.315 145.985 1 164.11 ? PN NDP 3002 B 1 
HETATM 25 O O1N NDP . . . F 3 101.256 168.357 146.891 1 164.09 ? O1N NDP 3002 B 1 
HETATM 26 O O2N NDP . . . F 3 101.271 170.629 145.763 1 164.12 ? O2N NDP 3002 B 1 
HETATM 27 O O5D NDP . . . F 3 102.162 168.65 144.558 1 163.6 ? O5D NDP 3002 B 1 
HETATM 28 C C5D NDP . . . F 3 102.264 169.652 143.541 1 163.1 ? C5D NDP 3002 B 1 
HETATM 29 C C4D NDP . . . F 3 103.648 169.563 142.983 1 162.83 ? C4D NDP 3002 B 1 
HETATM 30 O O4D NDP . . . F 3 104.634 169.428 144.031 1 162.63 ? O4D NDP 3002 B 1 
HETATM 31 C C3D NDP . . . F 3 103.865 168.329 142.112 1 162.56 ? C3D NDP 3002 B 1 
HETATM 32 O O3D NDP . . . F 3 103.345 168.64 140.832 1 162.54 ? O3D NDP 3002 B 1 
HETATM 33 C C2D NDP . . . F 3 105.372 168.162 142.168 1 162.26 ? C2D NDP 3002 B 1 
HETATM 34 O O2D NDP . . . F 3 105.987 168.707 141.023 1 161.97 ? O2D NDP 3002 B 1 
HETATM 35 C C1D NDP . . . F 3 105.799 168.926 143.419 1 162.19 ? C1D NDP 3002 B 1 
HETATM 36 N N1N NDP . . . F 3 106.489 168.014 144.359 1 161.69 ? N1N NDP 3002 B 1 
HETATM 37 C C2N NDP . . . F 3 105.766 167.032 144.971 1 161.48 ? C2N NDP 3002 B 1 
HETATM 38 C C3N NDP . . . F 3 106.349 166.121 145.791 1 161.4 ? C3N NDP 3002 B 1 
HETATM 39 C C7N NDP . . . F 3 105.508 165.077 146.38 1 161.5 ? C7N NDP 3002 B 1 
HETATM 40 O O7N NDP . . . F 3 104.324 164.971 146.057 1 161.5 ? O7N NDP 3002 B 1 
HETATM 41 N N7N NDP . . . F 3 106.07 164.292 147.285 1 161.41 ? N7N NDP 3002 B 1 
HETATM 42 C C4N NDP . . . F 3 107.805 166.216 146.07 1 161.23 ? C4N NDP 3002 B 1 
HETATM 43 C C5N NDP . . . F 3 108.492 167.318 145.38 1 161.35 ? C5N NDP 3002 B 1 
HETATM 44 C C6N NDP . . . F 3 107.841 168.151 144.599 1 161.4 ? C6N NDP 3002 B 1 
HETATM 45 P P2B NDP . . . F 3 110.226 171.402 150.377 1 166.12 ? P2B NDP 3002 B 1 
HETATM 46 O O1X NDP . . . F 3 109.345 172.628 150.391 1 165.92 ? O1X NDP 3002 B 1 
HETATM 47 O O2X NDP . . . F 3 111.676 171.718 150.712 1 165.93 ? O2X NDP 3002 B 1 
HETATM 48 O O3X NDP . . . F 3 109.662 170.29 151.234 1 166.15 ? O3X NDP 3002 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#