data_8WZH # _model_server_result.job_id RGi3sWbwSsfKsaf0ftHnQQ _model_server_result.datetime_utc '2025-07-07 19:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":3002}' # _entry.id 8WZH # _exptl.entry_id 8WZH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WZH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 B TYR 358 1_555 E FE HEM . B HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc2 B OH TYR 358 A TYR 358 1_555 G FE HEM . A HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc3 C OH TYR 358 C TYR 358 1_555 I FE HEM . C HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc4 D OH TYR 358 D TYR 358 1_555 K FE HEM . D HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 317 n n PA O2A NDP sing 318 n n PA O5B NDP sing 319 n n PA O3 NDP sing 320 n n O2A HOA2 NDP sing 321 n n O5B C5B NDP sing 322 n n C5B C4B NDP sing 323 n n C5B H51A NDP sing 324 n n C5B H52A NDP sing 325 n n C4B O4B NDP sing 326 n n C4B C3B NDP sing 327 n n C4B H4B NDP sing 328 n n O4B C1B NDP sing 329 n n C3B O3B NDP sing 330 n n C3B C2B NDP sing 331 n n C3B H3B NDP sing 332 n n O3B HO3A NDP sing 333 n n C2B O2B NDP sing 334 n n C2B C1B NDP sing 335 n n C2B H2B NDP sing 336 n n O2B P2B NDP sing 337 n n C1B N9A NDP sing 338 n n C1B H1B NDP sing 339 n n N9A C8A NDP sing 340 n y N9A C4A NDP sing 341 n y C8A N7A NDP doub 342 n y C8A H8A NDP sing 343 n n N7A C5A NDP sing 344 n y C5A C6A NDP sing 345 n y C5A C4A NDP doub 346 n y C6A N6A NDP sing 347 n n C6A N1A NDP doub 348 n y N6A H61A NDP sing 349 n n N6A H62A NDP sing 350 n n N1A C2A NDP sing 351 n y C2A N3A NDP doub 352 n y C2A H2A NDP sing 353 n n N3A C4A NDP sing 354 n y O3 PN NDP sing 355 n n PN O1N NDP doub 356 n n PN O2N NDP sing 357 n n PN O5D NDP sing 358 n n O2N H21N NDP sing 359 n n O5D C5D NDP sing 360 n n C5D C4D NDP sing 361 n n C5D H51N NDP sing 362 n n C5D H52N NDP sing 363 n n C4D O4D NDP sing 364 n n C4D C3D NDP sing 365 n n C4D H4D NDP sing 366 n n O4D C1D NDP sing 367 n n C3D O3D NDP sing 368 n n C3D C2D NDP sing 369 n n C3D H3D NDP sing 370 n n O3D HO3N NDP sing 371 n n C2D O2D NDP sing 372 n n C2D C1D NDP sing 373 n n C2D H2D NDP sing 374 n n O2D HO2N NDP sing 375 n n C1D N1N NDP sing 376 n n C1D H1D NDP sing 377 n n N1N C2N NDP sing 378 n n N1N C6N NDP sing 379 n n C2N C3N NDP doub 380 n n C2N H2N NDP sing 381 n n C3N C7N NDP sing 382 n n C3N C4N NDP sing 383 n n C7N O7N NDP doub 384 n n C7N N7N NDP sing 385 n n N7N H71N NDP sing 386 n n N7N H72N NDP sing 387 n n C4N C5N NDP sing 388 n n C4N H41N NDP sing 389 n n C4N H42N NDP sing 390 n n C5N C6N NDP doub 391 n n C5N H5N NDP sing 392 n n C6N H6N NDP sing 393 n n P2B O1X NDP doub 394 n n P2B O2X NDP sing 395 n n P2B O3X NDP sing 396 n n O2X HOP2 NDP sing 397 n n O3X HOP3 NDP sing 398 n n # _atom_sites.entry_id 8WZH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM B 1 3001 3001 HEM HEM . F 3 NDP B 1 3002 4001 NDP NDP . G 2 HEM A 1 3001 3001 HEM HEM . H 3 NDP A 1 3002 4001 NDP NDP . I 2 HEM C 1 3001 3001 HEM HEM . J 3 NDP C 1 3002 4001 NDP NDP . K 2 HEM D 1 3001 3001 HEM HEM . L 3 NDP D 1 3002 4001 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . L 3 170.538 170.76 124.2 1 164.23 ? PA NDP 3002 D 1 HETATM 2 O O1A NDP . . . L 3 170.583 171.99 125.043 1 164.13 ? O1A NDP 3002 D 1 HETATM 3 O O2A NDP . . . L 3 171.586 170.508 123.167 1 164.17 ? O2A NDP 3002 D 1 HETATM 4 O O5B NDP . . . L 3 169.105 170.657 123.524 1 164.3 ? O5B NDP 3002 D 1 HETATM 5 C C5B NDP . . . L 3 168.139 171.355 124.298 1 164.41 ? C5B NDP 3002 D 1 HETATM 6 C C4B NDP . . . L 3 167.011 170.401 124.485 1 164.34 ? C4B NDP 3002 D 1 HETATM 7 O O4B NDP . . . L 3 166.174 170.859 125.575 1 164.18 ? O4B NDP 3002 D 1 HETATM 8 C C3B NDP . . . L 3 166.104 170.304 123.254 1 164.48 ? C3B NDP 3002 D 1 HETATM 9 O O3B NDP . . . L 3 165.716 168.957 123.042 1 164.35 ? O3B NDP 3002 D 1 HETATM 10 C C2B NDP . . . L 3 164.953 171.204 123.652 1 164.54 ? C2B NDP 3002 D 1 HETATM 11 O O2B NDP . . . L 3 163.764 170.852 122.958 1 165.28 ? O2B NDP 3002 D 1 HETATM 12 C C1B NDP . . . L 3 164.843 170.862 125.126 1 164.08 ? C1B NDP 3002 D 1 HETATM 13 N N9A NDP . . . L 3 164.074 171.831 125.894 1 163.62 ? N9A NDP 3002 D 1 HETATM 14 C C8A NDP . . . L 3 164.264 173.191 125.905 1 163.6 ? C8A NDP 3002 D 1 HETATM 15 N N7A NDP . . . L 3 163.424 173.828 126.681 1 163.4 ? N7A NDP 3002 D 1 HETATM 16 C C5A NDP . . . L 3 162.623 172.826 127.212 1 163.21 ? C5A NDP 3002 D 1 HETATM 17 C C6A NDP . . . L 3 161.538 172.867 128.111 1 163.36 ? C6A NDP 3002 D 1 HETATM 18 N N6A NDP . . . L 3 161.071 173.996 128.637 1 163.3 ? N6A NDP 3002 D 1 HETATM 19 N N1A NDP . . . L 3 160.95 171.69 128.445 1 163.56 ? N1A NDP 3002 D 1 HETATM 20 C C2A NDP . . . L 3 161.434 170.56 127.906 1 163.53 ? C2A NDP 3002 D 1 HETATM 21 N N3A NDP . . . L 3 162.445 170.403 127.05 1 163.36 ? N3A NDP 3002 D 1 HETATM 22 C C4A NDP . . . L 3 163.01 171.587 126.735 1 163.29 ? C4A NDP 3002 D 1 HETATM 23 O O3 NDP . . . L 3 170.565 169.561 125.261 1 164.05 ? O3 NDP 3002 D 1 HETATM 24 P PN NDP . . . L 3 172.026 169.26 125.859 1 163.97 ? PN NDP 3002 D 1 HETATM 25 O O1N NDP . . . L 3 172.712 168.299 124.958 1 163.96 ? O1N NDP 3002 D 1 HETATM 26 O O2N NDP . . . L 3 172.695 170.573 126.082 1 163.96 ? O2N NDP 3002 D 1 HETATM 27 O O5D NDP . . . L 3 171.796 168.598 127.286 1 163.45 ? O5D NDP 3002 D 1 HETATM 28 C C5D NDP . . . L 3 171.689 169.602 128.301 1 162.92 ? C5D NDP 3002 D 1 HETATM 29 C C4D NDP . . . L 3 170.302 169.514 128.851 1 162.64 ? C4D NDP 3002 D 1 HETATM 30 O O4D NDP . . . L 3 169.323 169.379 127.798 1 162.43 ? O4D NDP 3002 D 1 HETATM 31 C C3D NDP . . . L 3 170.08 168.281 129.723 1 162.4 ? C3D NDP 3002 D 1 HETATM 32 O O3D NDP . . . L 3 170.593 168.592 131.005 1 162.41 ? O3D NDP 3002 D 1 HETATM 33 C C2D NDP . . . L 3 168.573 168.116 129.659 1 162.09 ? C2D NDP 3002 D 1 HETATM 34 O O2D NDP . . . L 3 167.952 168.665 130.8 1 161.81 ? O2D NDP 3002 D 1 HETATM 35 C C1D NDP . . . L 3 168.153 168.879 128.406 1 161.99 ? C1D NDP 3002 D 1 HETATM 36 N N1N NDP . . . L 3 167.467 167.968 127.463 1 161.48 ? N1N NDP 3002 D 1 HETATM 37 C C2N NDP . . . L 3 168.19 166.984 126.855 1 161.27 ? C2N NDP 3002 D 1 HETATM 38 C C3N NDP . . . L 3 167.61 166.073 126.033 1 161.2 ? C3N NDP 3002 D 1 HETATM 39 C C7N NDP . . . L 3 168.452 165.027 125.45 1 161.34 ? C7N NDP 3002 D 1 HETATM 40 O O7N NDP . . . L 3 169.635 164.919 125.779 1 161.37 ? O7N NDP 3002 D 1 HETATM 41 N N7N NDP . . . L 3 167.894 164.242 124.543 1 161.25 ? N7N NDP 3002 D 1 HETATM 42 C C4N NDP . . . L 3 166.156 166.171 125.746 1 161 ? C4N NDP 3002 D 1 HETATM 43 C C5N NDP . . . L 3 165.468 167.274 126.432 1 161.1 ? C5N NDP 3002 D 1 HETATM 44 C C6N NDP . . . L 3 166.115 168.107 127.216 1 161.16 ? C6N NDP 3002 D 1 HETATM 45 P P2B NDP . . . L 3 163.766 171.357 121.423 1 166.12 ? P2B NDP 3002 D 1 HETATM 46 O O1X NDP . . . L 3 164.651 172.581 121.413 1 165.92 ? O1X NDP 3002 D 1 HETATM 47 O O2X NDP . . . L 3 162.318 171.677 121.081 1 165.89 ? O2X NDP 3002 D 1 HETATM 48 O O3X NDP . . . L 3 164.332 170.243 120.571 1 166.17 ? O3X NDP 3002 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 48 #