data_8WZK
#
_model_server_result.job_id            BldhUpY8De8ad9YWoDikpQ 
_model_server_result.datetime_utc      '2024-11-22 07:36:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wzk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3001}' 
#
_entry.id    8WZK 
#
_exptl.entry_id    8WZK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WZK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WZK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 B TYR 358 1_555 E FE HEM . B HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc2 B OH TYR 358 A TYR 358 1_555 G FE HEM . A HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc3 C OH TYR 358 C TYR 358 1_555 I FE HEM . C HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc4 D OH TYR 358 D TYR 358 1_555 K FE HEM . D HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     8WZK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM B 1 3001 3001 HEM HEM . 
F 3 NDP B 1 3002 4001 NDP NDP . 
G 2 HEM A 1 3001 3001 HEM HEM . 
H 3 NDP A 1 3002 4001 NDP NDP . 
I 2 HEM C 1 3001 3001 HEM HEM . 
J 3 NDP C 1 3002 4001 NDP NDP . 
K 2 HEM D 1 3001 3001 HEM HEM . 
L 3 NDP D 1 3002 4001 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . E 2 123.159 151.845 140.577 1 76.13 ? CHA HEM 3001 B 1 
HETATM 2 C CHB HEM . . . E 2 120.402 149.723 137.21 1 76.28 ? CHB HEM 3001 B 1 
HETATM 3 C CHC HEM . . . E 2 116.755 152.723 138.394 1 79.53 ? CHC HEM 3001 B 1 
HETATM 4 C CHD HEM . . . E 2 119.388 154.54 141.952 1 74.46 ? CHD HEM 3001 B 1 
HETATM 5 C C1A HEM . . . E 2 122.719 150.996 139.549 1 72.72 ? C1A HEM 3001 B 1 
HETATM 6 C C2A HEM . . . E 2 123.53 150.051 138.897 1 76.87 ? C2A HEM 3001 B 1 
HETATM 7 C C3A HEM . . . E 2 122.779 149.477 137.958 1 76.48 ? C3A HEM 3001 B 1 
HETATM 8 C C4A HEM . . . E 2 121.488 150.038 138.041 1 80.04 ? C4A HEM 3001 B 1 
HETATM 9 C CMA HEM . . . E 2 123.207 148.334 137.037 1 83.3 ? CMA HEM 3001 B 1 
HETATM 10 C CAA HEM . . . E 2 124.996 149.721 139.207 1 57.76 ? CAA HEM 3001 B 1 
HETATM 11 C CBA HEM . . . E 2 125.138 149.089 140.61 1 70.57 ? CBA HEM 3001 B 1 
HETATM 12 C CGA HEM . . . E 2 126.538 148.558 140.825 1 79.71 ? CGA HEM 3001 B 1 
HETATM 13 O O1A HEM . . . E 2 127.075 148.668 141.921 1 83.82 ? O1A HEM 3001 B 1 
HETATM 14 O O2A HEM . . . E 2 127.163 147.966 139.878 1 96.67 ? O2A HEM 3001 B 1 
HETATM 15 C C1B HEM . . . E 2 119.188 150.381 137.257 1 81.18 ? C1B HEM 3001 B 1 
HETATM 16 C C2B HEM . . . E 2 118.103 150.019 136.419 1 83.4 ? C2B HEM 3001 B 1 
HETATM 17 C C3B HEM . . . E 2 117.026 150.853 136.751 1 92.21 ? C3B HEM 3001 B 1 
HETATM 18 C C4B HEM . . . E 2 117.523 151.715 137.841 1 79.53 ? C4B HEM 3001 B 1 
HETATM 19 C CMB HEM . . . E 2 118.138 148.932 135.379 1 86.27 ? CMB HEM 3001 B 1 
HETATM 20 C CAB HEM . . . E 2 115.652 150.923 136.225 1 85.17 ? CAB HEM 3001 B 1 
HETATM 21 C CBB HEM . . . E 2 115.087 150.104 135.347 1 103.33 ? CBB HEM 3001 B 1 
HETATM 22 C C1C HEM . . . E 2 117.132 153.54 139.445 1 68.98 ? C1C HEM 3001 B 1 
HETATM 23 C C2C HEM . . . E 2 116.231 154.348 140.211 1 81.51 ? C2C HEM 3001 B 1 
HETATM 24 C C3C HEM . . . E 2 116.96 154.825 141.271 1 77.7 ? C3C HEM 3001 B 1 
HETATM 25 C C4C HEM . . . E 2 118.308 154.26 141.118 1 66.99 ? C4C HEM 3001 B 1 
HETATM 26 C CMC HEM . . . E 2 114.751 154.541 139.918 1 88.73 ? CMC HEM 3001 B 1 
HETATM 27 C CAC HEM . . . E 2 116.564 155.702 142.397 1 84.49 ? CAC HEM 3001 B 1 
HETATM 28 C CBC HEM . . . E 2 115.349 156.044 142.716 1 99.37 ? CBC HEM 3001 B 1 
HETATM 29 C C1D HEM . . . E 2 120.633 153.951 141.821 1 73.74 ? C1D HEM 3001 B 1 
HETATM 30 C C2D HEM . . . E 2 121.694 154.266 142.764 1 67.65 ? C2D HEM 3001 B 1 
HETATM 31 C C3D HEM . . . E 2 122.765 153.514 142.368 1 75.71 ? C3D HEM 3001 B 1 
HETATM 32 C C4D HEM . . . E 2 122.324 152.759 141.206 1 73.35 ? C4D HEM 3001 B 1 
HETATM 33 C CMD HEM . . . E 2 121.621 155.214 143.915 1 77.78 ? CMD HEM 3001 B 1 
HETATM 34 C CAD HEM . . . E 2 124.15 153.452 142.946 1 68.97 ? CAD HEM 3001 B 1 
HETATM 35 C CBD HEM . . . E 2 124.169 152.528 144.152 1 80.91 ? CBD HEM 3001 B 1 
HETATM 36 C CGD HEM . . . E 2 125.496 152.607 144.858 1 76.75 ? CGD HEM 3001 B 1 
HETATM 37 O O1D HEM . . . E 2 125.65 153.579 145.621 1 87.9 ? O1D HEM 3001 B 1 
HETATM 38 O O2D HEM . . . E 2 126.417 151.774 144.733 1 99.41 ? O2D HEM 3001 B 1 
HETATM 39 N NA HEM . . . E 2 121.477 150.973 138.984 1 76.46 ? NA HEM 3001 B 1 
HETATM 40 N NB HEM . . . E 2 118.819 151.362 138.079 1 71.25 ? NB HEM 3001 B 1 
HETATM 41 N NC HEM . . . E 2 118.357 153.474 140.032 1 71.61 ? NC HEM 3001 B 1 
HETATM 42 N ND HEM . . . E 2 121.02 153.029 140.926 1 69.87 ? ND HEM 3001 B 1 
HETATM 43 FE FE HEM . . . E 2 119.996 152.199 139.535 1 70.09 ? FE HEM 3001 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#