data_8WZK # _model_server_result.job_id IuM_nrF0DjYWGqfuHEJJrw _model_server_result.datetime_utc '2024-11-22 07:30:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3001}' # _entry.id 8WZK # _exptl.entry_id 8WZK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WZK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 B TYR 358 1_555 E FE HEM . B HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc2 B OH TYR 358 A TYR 358 1_555 G FE HEM . A HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc3 C OH TYR 358 C TYR 358 1_555 I FE HEM . C HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc4 D OH TYR 358 D TYR 358 1_555 K FE HEM . D HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8WZK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM B 1 3001 3001 HEM HEM . F 3 NDP B 1 3002 4001 NDP NDP . G 2 HEM A 1 3001 3001 HEM HEM . H 3 NDP A 1 3002 4001 NDP NDP . I 2 HEM C 1 3001 3001 HEM HEM . J 3 NDP C 1 3002 4001 NDP NDP . K 2 HEM D 1 3001 3001 HEM HEM . L 3 NDP D 1 3002 4001 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 150.759 122.074 140.578 1 75.92 ? CHA HEM 3001 A 1 HETATM 2 C CHB HEM . . . G 2 153.518 124.196 137.213 1 76.36 ? CHB HEM 3001 A 1 HETATM 3 C CHC HEM . . . G 2 157.163 121.196 138.395 1 79.51 ? CHC HEM 3001 A 1 HETATM 4 C CHD HEM . . . G 2 154.532 119.377 141.953 1 74.48 ? CHD HEM 3001 A 1 HETATM 5 C C1A HEM . . . G 2 151.2 122.924 139.549 1 72.61 ? C1A HEM 3001 A 1 HETATM 6 C C2A HEM . . . G 2 150.39 123.869 138.898 1 76.85 ? C2A HEM 3001 A 1 HETATM 7 C C3A HEM . . . G 2 151.141 124.442 137.959 1 76.53 ? C3A HEM 3001 A 1 HETATM 8 C C4A HEM . . . G 2 152.432 123.881 138.043 1 79.92 ? C4A HEM 3001 A 1 HETATM 9 C CMA HEM . . . G 2 150.713 125.586 137.038 1 83.29 ? CMA HEM 3001 A 1 HETATM 10 C CAA HEM . . . G 2 148.924 124.199 139.207 1 57.79 ? CAA HEM 3001 A 1 HETATM 11 C CBA HEM . . . G 2 148.782 124.832 140.61 1 70.58 ? CBA HEM 3001 A 1 HETATM 12 C CGA HEM . . . G 2 147.382 125.362 140.825 1 79.67 ? CGA HEM 3001 A 1 HETATM 13 O O1A HEM . . . G 2 146.845 125.252 141.922 1 83.86 ? O1A HEM 3001 A 1 HETATM 14 O O2A HEM . . . G 2 146.756 125.954 139.879 1 96.7 ? O2A HEM 3001 A 1 HETATM 15 C C1B HEM . . . G 2 154.731 123.538 137.26 1 81.31 ? C1B HEM 3001 A 1 HETATM 16 C C2B HEM . . . G 2 155.816 123.9 136.42 1 83.4 ? C2B HEM 3001 A 1 HETATM 17 C C3B HEM . . . G 2 156.894 123.067 136.752 1 92.2 ? C3B HEM 3001 A 1 HETATM 18 C C4B HEM . . . G 2 156.396 122.205 137.842 1 79.55 ? C4B HEM 3001 A 1 HETATM 19 C CMB HEM . . . G 2 155.782 124.988 135.38 1 86.29 ? CMB HEM 3001 A 1 HETATM 20 C CAB HEM . . . G 2 158.268 122.997 136.225 1 85.12 ? CAB HEM 3001 A 1 HETATM 21 C CBB HEM . . . G 2 158.833 123.816 135.347 1 103.25 ? CBB HEM 3001 A 1 HETATM 22 C C1C HEM . . . G 2 156.787 120.379 139.446 1 68.95 ? C1C HEM 3001 A 1 HETATM 23 C C2C HEM . . . G 2 157.689 119.572 140.211 1 81.64 ? C2C HEM 3001 A 1 HETATM 24 C C3C HEM . . . G 2 156.961 119.095 141.272 1 77.72 ? C3C HEM 3001 A 1 HETATM 25 C C4C HEM . . . G 2 155.612 119.658 141.118 1 66.99 ? C4C HEM 3001 A 1 HETATM 26 C CMC HEM . . . G 2 159.169 119.379 139.918 1 88.72 ? CMC HEM 3001 A 1 HETATM 27 C CAC HEM . . . G 2 157.356 118.217 142.398 1 84.54 ? CAC HEM 3001 A 1 HETATM 28 C CBC HEM . . . G 2 158.571 117.876 142.716 1 99.33 ? CBC HEM 3001 A 1 HETATM 29 C C1D HEM . . . G 2 153.287 119.968 141.822 1 74.11 ? C1D HEM 3001 A 1 HETATM 30 C C2D HEM . . . G 2 152.226 119.653 142.765 1 67.63 ? C2D HEM 3001 A 1 HETATM 31 C C3D HEM . . . G 2 151.155 120.406 142.368 1 75.69 ? C3D HEM 3001 A 1 HETATM 32 C C4D HEM . . . G 2 151.595 121.16 141.206 1 73.6 ? C4D HEM 3001 A 1 HETATM 33 C CMD HEM . . . G 2 152.299 118.706 143.916 1 77.89 ? CMD HEM 3001 A 1 HETATM 34 C CAD HEM . . . G 2 149.77 120.468 142.946 1 69.03 ? CAD HEM 3001 A 1 HETATM 35 C CBD HEM . . . G 2 149.751 121.391 144.152 1 81.05 ? CBD HEM 3001 A 1 HETATM 36 C CGD HEM . . . G 2 148.423 121.313 144.859 1 76.71 ? CGD HEM 3001 A 1 HETATM 37 O O1D HEM . . . G 2 148.271 120.341 145.621 1 87.97 ? O1D HEM 3001 A 1 HETATM 38 O O2D HEM . . . G 2 147.503 122.147 144.733 1 99.46 ? O2D HEM 3001 A 1 HETATM 39 N NA HEM . . . G 2 152.443 122.945 138.984 1 76.63 ? NA HEM 3001 A 1 HETATM 40 N NB HEM . . . G 2 155.101 122.557 138.08 1 71.22 ? NB HEM 3001 A 1 HETATM 41 N NC HEM . . . G 2 155.564 120.443 140.032 1 71.77 ? NC HEM 3001 A 1 HETATM 42 N ND HEM . . . G 2 152.9 120.891 140.929 1 70.34 ? ND HEM 3001 A 1 HETATM 43 FE FE HEM . . . G 2 153.923 121.719 139.537 1 70.25 ? FE HEM 3001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #