data_8WZK
#
_model_server_result.job_id            lvzL0Yfig-z5pwqzcZuryA 
_model_server_result.datetime_utc      '2024-11-22 07:04:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wzk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":3001}' 
#
_entry.id    8WZK 
#
_exptl.entry_id    8WZK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WZK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WZK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 B TYR 358 1_555 E FE HEM . B HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc2 B OH TYR 358 A TYR 358 1_555 G FE HEM . A HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc3 C OH TYR 358 C TYR 358 1_555 I FE HEM . C HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc4 D OH TYR 358 D TYR 358 1_555 K FE HEM . D HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     8WZK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM B 1 3001 3001 HEM HEM . 
F 3 NDP B 1 3002 4001 NDP NDP . 
G 2 HEM A 1 3001 3001 HEM HEM . 
H 3 NDP A 1 3002 4001 NDP NDP . 
I 2 HEM C 1 3001 3001 HEM HEM . 
J 3 NDP C 1 3002 4001 NDP NDP . 
K 2 HEM D 1 3001 3001 HEM HEM . 
L 3 NDP D 1 3002 4001 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . I 2 123.161 122.074 131.202 1 75.88 ? CHA HEM 3001 C 1 
HETATM 2 C CHB HEM . . . I 2 120.402 124.195 134.567 1 76.35 ? CHB HEM 3001 C 1 
HETATM 3 C CHC HEM . . . I 2 116.757 121.196 133.385 1 79.6 ? CHC HEM 3001 C 1 
HETATM 4 C CHD HEM . . . I 2 119.388 119.377 129.827 1 74.47 ? CHD HEM 3001 C 1 
HETATM 5 C C1A HEM . . . I 2 122.721 122.924 132.231 1 72.6 ? C1A HEM 3001 C 1 
HETATM 6 C C2A HEM . . . I 2 123.53 123.869 132.883 1 76.86 ? C2A HEM 3001 C 1 
HETATM 7 C C3A HEM . . . I 2 122.779 124.442 133.821 1 76.5 ? C3A HEM 3001 C 1 
HETATM 8 C C4A HEM . . . I 2 121.488 123.881 133.737 1 79.86 ? C4A HEM 3001 C 1 
HETATM 9 C CMA HEM . . . I 2 123.206 125.586 134.743 1 83.31 ? CMA HEM 3001 C 1 
HETATM 10 C CAA HEM . . . I 2 124.996 124.198 132.573 1 57.8 ? CAA HEM 3001 C 1 
HETATM 11 C CBA HEM . . . I 2 125.138 124.831 131.17 1 70.6 ? CBA HEM 3001 C 1 
HETATM 12 C CGA HEM . . . I 2 126.538 125.362 130.955 1 79.69 ? CGA HEM 3001 C 1 
HETATM 13 O O1A HEM . . . I 2 127.075 125.252 129.858 1 83.89 ? O1A HEM 3001 C 1 
HETATM 14 O O2A HEM . . . I 2 127.163 125.954 131.901 1 96.65 ? O2A HEM 3001 C 1 
HETATM 15 C C1B HEM . . . I 2 119.189 123.538 134.521 1 81.29 ? C1B HEM 3001 C 1 
HETATM 16 C C2B HEM . . . I 2 118.104 123.9 135.36 1 83.41 ? C2B HEM 3001 C 1 
HETATM 17 C C3B HEM . . . I 2 117.026 123.067 135.028 1 92.27 ? C3B HEM 3001 C 1 
HETATM 18 C C4B HEM . . . I 2 117.524 122.205 133.937 1 79.61 ? C4B HEM 3001 C 1 
HETATM 19 C CMB HEM . . . I 2 118.138 124.988 136.399 1 86.32 ? CMB HEM 3001 C 1 
HETATM 20 C CAB HEM . . . I 2 115.652 122.997 135.555 1 85.17 ? CAB HEM 3001 C 1 
HETATM 21 C CBB HEM . . . I 2 115.087 123.816 136.432 1 103.28 ? CBB HEM 3001 C 1 
HETATM 22 C C1C HEM . . . I 2 117.133 120.379 132.334 1 68.91 ? C1C HEM 3001 C 1 
HETATM 23 C C2C HEM . . . I 2 116.231 119.571 131.569 1 81.53 ? C2C HEM 3001 C 1 
HETATM 24 C C3C HEM . . . I 2 116.959 119.095 130.509 1 77.66 ? C3C HEM 3001 C 1 
HETATM 25 C C4C HEM . . . I 2 118.307 119.658 130.662 1 66.99 ? C4C HEM 3001 C 1 
HETATM 26 C CMC HEM . . . I 2 114.75 119.379 131.862 1 88.71 ? CMC HEM 3001 C 1 
HETATM 27 C CAC HEM . . . I 2 116.563 118.217 129.383 1 84.45 ? CAC HEM 3001 C 1 
HETATM 28 C CBC HEM . . . I 2 115.348 117.875 129.064 1 99.28 ? CBC HEM 3001 C 1 
HETATM 29 C C1D HEM . . . I 2 120.633 119.968 129.958 1 74.09 ? C1D HEM 3001 C 1 
HETATM 30 C C2D HEM . . . I 2 121.694 119.653 129.015 1 67.64 ? C2D HEM 3001 C 1 
HETATM 31 C C3D HEM . . . I 2 122.765 120.406 129.412 1 75.69 ? C3D HEM 3001 C 1 
HETATM 32 C C4D HEM . . . I 2 122.325 121.16 130.574 1 73.57 ? C4D HEM 3001 C 1 
HETATM 33 C CMD HEM . . . I 2 121.621 118.706 127.864 1 77.9 ? CMD HEM 3001 C 1 
HETATM 34 C CAD HEM . . . I 2 124.151 120.469 128.833 1 69.04 ? CAD HEM 3001 C 1 
HETATM 35 C CBD HEM . . . I 2 124.168 121.391 127.628 1 81.03 ? CBD HEM 3001 C 1 
HETATM 36 C CGD HEM . . . I 2 125.496 121.313 126.921 1 76.73 ? CGD HEM 3001 C 1 
HETATM 37 O O1D HEM . . . I 2 125.649 120.341 126.159 1 87.96 ? O1D HEM 3001 C 1 
HETATM 38 O O2D HEM . . . I 2 126.417 122.146 127.047 1 99.45 ? O2D HEM 3001 C 1 
HETATM 39 N NA HEM . . . I 2 121.477 122.945 132.796 1 76.67 ? NA HEM 3001 C 1 
HETATM 40 N NB HEM . . . I 2 118.819 122.557 133.7 1 71.27 ? NB HEM 3001 C 1 
HETATM 41 N NC HEM . . . I 2 118.356 120.443 131.748 1 71.81 ? NC HEM 3001 C 1 
HETATM 42 N ND HEM . . . I 2 121.02 120.891 130.851 1 70.35 ? ND HEM 3001 C 1 
HETATM 43 FE FE HEM . . . I 2 119.997 121.719 132.243 1 70.23 ? FE HEM 3001 C 1 
#
_model_server_stats.io_time_ms              123 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    197 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#