data_8WZK
#
_model_server_result.job_id            bkci2mCdGsuamJsjWUKWWg 
_model_server_result.datetime_utc      '2024-11-22 07:25:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wzk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":3002}' 
#
_entry.id    8WZK 
#
_exptl.entry_id    8WZK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WZK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WZK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 B TYR 358 1_555 E FE HEM . B HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc2 B OH TYR 358 A TYR 358 1_555 G FE HEM . A HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc3 C OH TYR 358 C TYR 358 1_555 I FE HEM . C HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc4 D OH TYR 358 D TYR 358 1_555 K FE HEM . D HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 317 n n 
PA O2A NDP sing 318 n n 
PA O5B NDP sing 319 n n 
PA O3 NDP sing 320 n n 
O2A HOA2 NDP sing 321 n n 
O5B C5B NDP sing 322 n n 
C5B C4B NDP sing 323 n n 
C5B H51A NDP sing 324 n n 
C5B H52A NDP sing 325 n n 
C4B O4B NDP sing 326 n n 
C4B C3B NDP sing 327 n n 
C4B H4B NDP sing 328 n n 
O4B C1B NDP sing 329 n n 
C3B O3B NDP sing 330 n n 
C3B C2B NDP sing 331 n n 
C3B H3B NDP sing 332 n n 
O3B HO3A NDP sing 333 n n 
C2B O2B NDP sing 334 n n 
C2B C1B NDP sing 335 n n 
C2B H2B NDP sing 336 n n 
O2B P2B NDP sing 337 n n 
C1B N9A NDP sing 338 n n 
C1B H1B NDP sing 339 n n 
N9A C8A NDP sing 340 n y 
N9A C4A NDP sing 341 n y 
C8A N7A NDP doub 342 n y 
C8A H8A NDP sing 343 n n 
N7A C5A NDP sing 344 n y 
C5A C6A NDP sing 345 n y 
C5A C4A NDP doub 346 n y 
C6A N6A NDP sing 347 n n 
C6A N1A NDP doub 348 n y 
N6A H61A NDP sing 349 n n 
N6A H62A NDP sing 350 n n 
N1A C2A NDP sing 351 n y 
C2A N3A NDP doub 352 n y 
C2A H2A NDP sing 353 n n 
N3A C4A NDP sing 354 n y 
O3 PN NDP sing 355 n n 
PN O1N NDP doub 356 n n 
PN O2N NDP sing 357 n n 
PN O5D NDP sing 358 n n 
O2N H21N NDP sing 359 n n 
O5D C5D NDP sing 360 n n 
C5D C4D NDP sing 361 n n 
C5D H51N NDP sing 362 n n 
C5D H52N NDP sing 363 n n 
C4D O4D NDP sing 364 n n 
C4D C3D NDP sing 365 n n 
C4D H4D NDP sing 366 n n 
O4D C1D NDP sing 367 n n 
C3D O3D NDP sing 368 n n 
C3D C2D NDP sing 369 n n 
C3D H3D NDP sing 370 n n 
O3D HO3N NDP sing 371 n n 
C2D O2D NDP sing 372 n n 
C2D C1D NDP sing 373 n n 
C2D H2D NDP sing 374 n n 
O2D HO2N NDP sing 375 n n 
C1D N1N NDP sing 376 n n 
C1D H1D NDP sing 377 n n 
N1N C2N NDP sing 378 n n 
N1N C6N NDP sing 379 n n 
C2N C3N NDP doub 380 n n 
C2N H2N NDP sing 381 n n 
C3N C7N NDP sing 382 n n 
C3N C4N NDP sing 383 n n 
C7N O7N NDP doub 384 n n 
C7N N7N NDP sing 385 n n 
N7N H71N NDP sing 386 n n 
N7N H72N NDP sing 387 n n 
C4N C5N NDP sing 388 n n 
C4N H41N NDP sing 389 n n 
C4N H42N NDP sing 390 n n 
C5N C6N NDP doub 391 n n 
C5N H5N NDP sing 392 n n 
C6N H6N NDP sing 393 n n 
P2B O1X NDP doub 394 n n 
P2B O2X NDP sing 395 n n 
P2B O3X NDP sing 396 n n 
O2X HOP2 NDP sing 397 n n 
O3X HOP3 NDP sing 398 n n 
#
_atom_sites.entry_id                     8WZK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM B 1 3001 3001 HEM HEM . 
F 3 NDP B 1 3002 4001 NDP NDP . 
G 2 HEM A 1 3001 3001 HEM HEM . 
H 3 NDP A 1 3002 4001 NDP NDP . 
I 2 HEM C 1 3001 3001 HEM HEM . 
J 3 NDP C 1 3002 4001 NDP NDP . 
K 2 HEM D 1 3001 3001 HEM HEM . 
L 3 NDP D 1 3002 4001 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . J 3 103.599 103.094 124.135 1 98.17 ? PA NDP 3002 C 1 
HETATM 2 O O1A NDP . . . J 3 103.634 101.601 124.228 1 122.14 ? O1A NDP 3002 C 1 
HETATM 3 O O2A NDP . . . J 3 102.704 103.704 123.113 1 103.48 ? O2A NDP 3002 C 1 
HETATM 4 O O5B NDP . . . J 3 105.089 103.64 123.933 1 113.88 ? O5B NDP 3002 C 1 
HETATM 5 C C5B NDP . . . J 3 106.222 103.032 124.622 1 117.45 ? C5B NDP 3002 C 1 
HETATM 6 C C4B NDP . . . J 3 107.388 103.994 124.634 1 109.26 ? C4B NDP 3002 C 1 
HETATM 7 O O4B NDP . . . J 3 108.282 103.668 125.734 1 88.07 ? O4B NDP 3002 C 1 
HETATM 8 C C3B NDP . . . J 3 108.251 103.981 123.363 1 98.95 ? C3B NDP 3002 C 1 
HETATM 9 O O3B NDP . . . J 3 108.563 105.3 122.933 1 109.21 ? O3B NDP 3002 C 1 
HETATM 10 C C2B NDP . . . J 3 109.488 103.194 123.793 1 97.41 ? C2B NDP 3002 C 1 
HETATM 11 O O2B NDP . . . J 3 110.676 103.581 123.081 1 113.31 ? O2B NDP 3002 C 1 
HETATM 12 C C1B NDP . . . J 3 109.603 103.589 125.256 1 87.05 ? C1B NDP 3002 C 1 
HETATM 13 N N9A NDP . . . J 3 110.358 102.64 126.061 1 100.38 ? N9A NDP 3002 C 1 
HETATM 14 C C8A NDP . . . J 3 110.358 101.271 125.953 1 103.8 ? C8A NDP 3002 C 1 
HETATM 15 N N7A NDP . . . J 3 111.138 100.678 126.823 1 101.83 ? N7A NDP 3002 C 1 
HETATM 16 C C5A NDP . . . J 3 111.712 101.719 127.536 1 104.83 ? C5A NDP 3002 C 1 
HETATM 17 C C6A NDP . . . J 3 112.659 101.748 128.583 1 105.72 ? C6A NDP 3002 C 1 
HETATM 18 N N6A NDP . . . J 3 113.203 100.664 129.122 1 115.28 ? N6A NDP 3002 C 1 
HETATM 19 N N1A NDP . . . J 3 113.043 102.961 129.048 1 110.98 ? N1A NDP 3002 C 1 
HETATM 20 C C2A NDP . . . J 3 112.479 104.054 128.509 1 102.01 ? C2A NDP 3002 C 1 
HETATM 21 N N3A NDP . . . J 3 111.578 104.15 127.532 1 103.31 ? N3A NDP 3002 C 1 
HETATM 22 C C4A NDP . . . J 3 111.231 102.934 127.078 1 107.34 ? C4A NDP 3002 C 1 
HETATM 23 O O3 NDP . . . J 3 103.246 103.688 125.583 1 99.71 ? O3 NDP 3002 C 1 
HETATM 24 P PN NDP . . . J 3 102.16 104.779 126.007 1 99.63 ? PN NDP 3002 C 1 
HETATM 25 O O1N NDP . . . J 3 102.278 105.993 125.143 1 105.47 ? O1N NDP 3002 C 1 
HETATM 26 O O2N NDP . . . J 3 100.816 104.132 126.055 1 125.49 ? O2N NDP 3002 C 1 
HETATM 27 O O5D NDP . . . J 3 102.636 105.121 127.494 1 101.17 ? O5D NDP 3002 C 1 
HETATM 28 C C5D NDP . . . J 3 102.987 104.058 128.406 1 91.96 ? C5D NDP 3002 C 1 
HETATM 29 C C4D NDP . . . J 3 104.194 104.47 129.209 1 107.03 ? C4D NDP 3002 C 1 
HETATM 30 O O4D NDP . . . J 3 105.344 104.512 128.33 1 110.96 ? O4D NDP 3002 C 1 
HETATM 31 C C3D NDP . . . J 3 104.159 105.862 129.852 1 103.97 ? C3D NDP 3002 C 1 
HETATM 32 O O3D NDP . . . J 3 103.565 105.775 131.137 1 97.61 ? O3D NDP 3002 C 1 
HETATM 33 C C2D NDP . . . J 3 105.655 106.22 129.94 1 96.59 ? C2D NDP 3002 C 1 
HETATM 34 O O2D NDP . . . J 3 106.206 105.858 131.197 1 82.56 ? O2D NDP 3002 C 1 
HETATM 35 C C1D NDP . . . J 3 106.326 105.409 128.842 1 95.51 ? C1D NDP 3002 C 1 
HETATM 36 N N1N NDP . . . J 3 106.825 106.278 127.725 1 100.87 ? N1N NDP 3002 C 1 
HETATM 37 C C2N NDP . . . J 3 105.946 107.011 126.962 1 90.11 ? C2N NDP 3002 C 1 
HETATM 38 C C3N NDP . . . J 3 106.377 107.874 125.959 1 107.03 ? C3N NDP 3002 C 1 
HETATM 39 C C7N NDP . . . J 3 105.379 108.785 125.322 1 108.87 ? C7N NDP 3002 C 1 
HETATM 40 O O7N NDP . . . J 3 104.185 108.703 125.622 1 98.28 ? O7N NDP 3002 C 1 
HETATM 41 N N7N NDP . . . J 3 105.805 109.699 124.464 1 100.63 ? N7N NDP 3002 C 1 
HETATM 42 C C4N NDP . . . J 3 107.839 107.915 125.623 1 94.09 ? C4N NDP 3002 C 1 
HETATM 43 C C5N NDP . . . J 3 108.667 106.951 126.381 1 95.16 ? C5N NDP 3002 C 1 
HETATM 44 C C6N NDP . . . J 3 108.184 106.291 127.418 1 104.74 ? C6N NDP 3002 C 1 
HETATM 45 P P2B NDP . . . J 3 110.763 103.013 121.566 1 121.44 ? P2B NDP 3002 C 1 
HETATM 46 O O1X NDP . . . J 3 110.367 101.544 121.585 1 139.39 ? O1X NDP 3002 C 1 
HETATM 47 O O2X NDP . . . J 3 112.185 103.185 121.115 1 129.88 ? O2X NDP 3002 C 1 
HETATM 48 O O3X NDP . . . J 3 109.81 103.844 120.733 1 126.13 ? O3X NDP 3002 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#