data_8WZK
#
_model_server_result.job_id            j_rEqQC07JXMgVy7kRadkA 
_model_server_result.datetime_utc      '2024-11-22 07:52:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wzk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":3002}' 
#
_entry.id    8WZK 
#
_exptl.entry_id    8WZK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WZK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WZK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 B TYR 358 1_555 E FE HEM . B HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc2 B OH TYR 358 A TYR 358 1_555 G FE HEM . A HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc3 C OH TYR 358 C TYR 358 1_555 I FE HEM . C HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc4 D OH TYR 358 D TYR 358 1_555 K FE HEM . D HEM 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 317 n n 
PA O2A NDP sing 318 n n 
PA O5B NDP sing 319 n n 
PA O3 NDP sing 320 n n 
O2A HOA2 NDP sing 321 n n 
O5B C5B NDP sing 322 n n 
C5B C4B NDP sing 323 n n 
C5B H51A NDP sing 324 n n 
C5B H52A NDP sing 325 n n 
C4B O4B NDP sing 326 n n 
C4B C3B NDP sing 327 n n 
C4B H4B NDP sing 328 n n 
O4B C1B NDP sing 329 n n 
C3B O3B NDP sing 330 n n 
C3B C2B NDP sing 331 n n 
C3B H3B NDP sing 332 n n 
O3B HO3A NDP sing 333 n n 
C2B O2B NDP sing 334 n n 
C2B C1B NDP sing 335 n n 
C2B H2B NDP sing 336 n n 
O2B P2B NDP sing 337 n n 
C1B N9A NDP sing 338 n n 
C1B H1B NDP sing 339 n n 
N9A C8A NDP sing 340 n y 
N9A C4A NDP sing 341 n y 
C8A N7A NDP doub 342 n y 
C8A H8A NDP sing 343 n n 
N7A C5A NDP sing 344 n y 
C5A C6A NDP sing 345 n y 
C5A C4A NDP doub 346 n y 
C6A N6A NDP sing 347 n n 
C6A N1A NDP doub 348 n y 
N6A H61A NDP sing 349 n n 
N6A H62A NDP sing 350 n n 
N1A C2A NDP sing 351 n y 
C2A N3A NDP doub 352 n y 
C2A H2A NDP sing 353 n n 
N3A C4A NDP sing 354 n y 
O3 PN NDP sing 355 n n 
PN O1N NDP doub 356 n n 
PN O2N NDP sing 357 n n 
PN O5D NDP sing 358 n n 
O2N H21N NDP sing 359 n n 
O5D C5D NDP sing 360 n n 
C5D C4D NDP sing 361 n n 
C5D H51N NDP sing 362 n n 
C5D H52N NDP sing 363 n n 
C4D O4D NDP sing 364 n n 
C4D C3D NDP sing 365 n n 
C4D H4D NDP sing 366 n n 
O4D C1D NDP sing 367 n n 
C3D O3D NDP sing 368 n n 
C3D C2D NDP sing 369 n n 
C3D H3D NDP sing 370 n n 
O3D HO3N NDP sing 371 n n 
C2D O2D NDP sing 372 n n 
C2D C1D NDP sing 373 n n 
C2D H2D NDP sing 374 n n 
O2D HO2N NDP sing 375 n n 
C1D N1N NDP sing 376 n n 
C1D H1D NDP sing 377 n n 
N1N C2N NDP sing 378 n n 
N1N C6N NDP sing 379 n n 
C2N C3N NDP doub 380 n n 
C2N H2N NDP sing 381 n n 
C3N C7N NDP sing 382 n n 
C3N C4N NDP sing 383 n n 
C7N O7N NDP doub 384 n n 
C7N N7N NDP sing 385 n n 
N7N H71N NDP sing 386 n n 
N7N H72N NDP sing 387 n n 
C4N C5N NDP sing 388 n n 
C4N H41N NDP sing 389 n n 
C4N H42N NDP sing 390 n n 
C5N C6N NDP doub 391 n n 
C5N H5N NDP sing 392 n n 
C6N H6N NDP sing 393 n n 
P2B O1X NDP doub 394 n n 
P2B O2X NDP sing 395 n n 
P2B O3X NDP sing 396 n n 
O2X HOP2 NDP sing 397 n n 
O3X HOP3 NDP sing 398 n n 
#
_atom_sites.entry_id                     8WZK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM B 1 3001 3001 HEM HEM . 
F 3 NDP B 1 3002 4001 NDP NDP . 
G 2 HEM A 1 3001 3001 HEM HEM . 
H 3 NDP A 1 3002 4001 NDP NDP . 
I 2 HEM C 1 3001 3001 HEM HEM . 
J 3 NDP C 1 3002 4001 NDP NDP . 
K 2 HEM D 1 3001 3001 HEM HEM . 
L 3 NDP D 1 3002 4001 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . L 3 170.321 170.826 124.136 1 98.21 ? PA NDP 3002 D 1 
HETATM 2 O O1A NDP . . . L 3 170.287 172.318 124.228 1 122.21 ? O1A NDP 3002 D 1 
HETATM 3 O O2A NDP . . . L 3 171.217 170.216 123.113 1 103.42 ? O2A NDP 3002 D 1 
HETATM 4 O O5B NDP . . . L 3 168.831 170.28 123.934 1 113.95 ? O5B NDP 3002 D 1 
HETATM 5 C C5B NDP . . . L 3 167.698 170.888 124.623 1 117.45 ? C5B NDP 3002 D 1 
HETATM 6 C C4B NDP . . . L 3 166.532 169.926 124.635 1 109.23 ? C4B NDP 3002 D 1 
HETATM 7 O O4B NDP . . . L 3 165.638 170.252 125.735 1 88.07 ? O4B NDP 3002 D 1 
HETATM 8 C C3B NDP . . . L 3 165.669 169.94 123.363 1 98.94 ? C3B NDP 3002 D 1 
HETATM 9 O O3B NDP . . . L 3 165.358 168.622 122.933 1 109.11 ? O3B NDP 3002 D 1 
HETATM 10 C C2B NDP . . . L 3 164.432 170.727 123.794 1 97.4 ? C2B NDP 3002 D 1 
HETATM 11 O O2B NDP . . . L 3 163.244 170.339 123.082 1 113.29 ? O2B NDP 3002 D 1 
HETATM 12 C C1B NDP . . . L 3 164.317 170.331 125.257 1 87.03 ? C1B NDP 3002 D 1 
HETATM 13 N N9A NDP . . . L 3 163.562 171.281 126.062 1 100.41 ? N9A NDP 3002 D 1 
HETATM 14 C C8A NDP . . . L 3 163.562 172.65 125.954 1 103.81 ? C8A NDP 3002 D 1 
HETATM 15 N N7A NDP . . . L 3 162.782 173.242 126.824 1 101.82 ? N7A NDP 3002 D 1 
HETATM 16 C C5A NDP . . . L 3 162.208 172.201 127.537 1 104.82 ? C5A NDP 3002 D 1 
HETATM 17 C C6A NDP . . . L 3 161.261 172.173 128.584 1 105.71 ? C6A NDP 3002 D 1 
HETATM 18 N N6A NDP . . . L 3 160.717 173.257 129.123 1 115.33 ? N6A NDP 3002 D 1 
HETATM 19 N N1A NDP . . . L 3 160.877 170.96 129.048 1 111 ? N1A NDP 3002 D 1 
HETATM 20 C C2A NDP . . . L 3 161.441 169.867 128.51 1 101.98 ? C2A NDP 3002 D 1 
HETATM 21 N N3A NDP . . . L 3 162.342 169.77 127.533 1 103.27 ? N3A NDP 3002 D 1 
HETATM 22 C C4A NDP . . . L 3 162.689 170.986 127.079 1 107.38 ? C4A NDP 3002 D 1 
HETATM 23 O O3 NDP . . . L 3 170.674 170.232 125.583 1 99.66 ? O3 NDP 3002 D 1 
HETATM 24 P PN NDP . . . L 3 171.76 169.14 126.007 1 99.59 ? PN NDP 3002 D 1 
HETATM 25 O O1N NDP . . . L 3 171.642 167.926 125.144 1 105.49 ? O1N NDP 3002 D 1 
HETATM 26 O O2N NDP . . . L 3 173.104 169.787 126.056 1 125.35 ? O2N NDP 3002 D 1 
HETATM 27 O O5D NDP . . . L 3 171.284 168.799 127.494 1 101.18 ? O5D NDP 3002 D 1 
HETATM 28 C C5D NDP . . . L 3 170.934 169.862 128.406 1 91.96 ? C5D NDP 3002 D 1 
HETATM 29 C C4D NDP . . . L 3 169.727 169.45 129.21 1 107.02 ? C4D NDP 3002 D 1 
HETATM 30 O O4D NDP . . . L 3 168.577 169.408 128.331 1 110.89 ? O4D NDP 3002 D 1 
HETATM 31 C C3D NDP . . . L 3 169.762 168.058 129.854 1 103.93 ? C3D NDP 3002 D 1 
HETATM 32 O O3D NDP . . . L 3 170.356 168.145 131.139 1 97.58 ? O3D NDP 3002 D 1 
HETATM 33 C C2D NDP . . . L 3 168.265 167.7 129.941 1 96.49 ? C2D NDP 3002 D 1 
HETATM 34 O O2D NDP . . . L 3 167.714 168.062 131.198 1 82.58 ? O2D NDP 3002 D 1 
HETATM 35 C C1D NDP . . . L 3 167.595 168.512 128.842 1 95.47 ? C1D NDP 3002 D 1 
HETATM 36 N N1N NDP . . . L 3 167.095 167.642 127.725 1 100.84 ? N1N NDP 3002 D 1 
HETATM 37 C C2N NDP . . . L 3 167.974 166.91 126.962 1 90.06 ? C2N NDP 3002 D 1 
HETATM 38 C C3N NDP . . . L 3 167.543 166.046 125.96 1 107.03 ? C3N NDP 3002 D 1 
HETATM 39 C C7N NDP . . . L 3 168.541 165.135 125.323 1 108.86 ? C7N NDP 3002 D 1 
HETATM 40 O O7N NDP . . . L 3 169.735 165.217 125.623 1 98.31 ? O7N NDP 3002 D 1 
HETATM 41 N N7N NDP . . . L 3 168.115 164.222 124.464 1 100.52 ? N7N NDP 3002 D 1 
HETATM 42 C C4N NDP . . . L 3 166.081 166.006 125.623 1 94.11 ? C4N NDP 3002 D 1 
HETATM 43 C C5N NDP . . . L 3 165.253 166.97 126.38 1 95.19 ? C5N NDP 3002 D 1 
HETATM 44 C C6N NDP . . . L 3 165.737 167.63 127.418 1 104.73 ? C6N NDP 3002 D 1 
HETATM 45 P P2B NDP . . . L 3 163.158 170.907 121.567 1 121.44 ? P2B NDP 3002 D 1 
HETATM 46 O O1X NDP . . . L 3 163.553 172.377 121.586 1 139.41 ? O1X NDP 3002 D 1 
HETATM 47 O O2X NDP . . . L 3 161.736 170.735 121.116 1 129.79 ? O2X NDP 3002 D 1 
HETATM 48 O O3X NDP . . . L 3 164.11 170.077 120.734 1 126.09 ? O3X NDP 3002 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           48 
#