data_8WZO # _model_server_result.job_id '_RyVugrWT6GKMd9xjfiHbw' _model_server_result.datetime_utc '2024-11-22 01:32:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":509}' # _entry.id 8WZO # _exptl.entry_id 8WZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.38 _cell.angle_gamma 90 _cell.entry_id 8WZO _cell.length_a 77.976 _cell.length_b 47.747 _cell.length_c 127.859 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 65 B GLY 64 1_555 B N SEP 66 B SEP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 B C SEP 66 B SEP 65 1_555 B N VAL 67 B VAL 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A SG CYS 10 A CYS 150 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A SG CYS 14 A CYS 154 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A SG CYS 26 A CYS 166 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A SG CYS 29 A CYS 169 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 A SG CYS 56 A CYS 196 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 A SG CYS 61 A CYS 201 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc7 A SG CYS 72 A CYS 212 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 A ND1 HIS 75 A HIS 215 1_555 J ZN ZN . A ZN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 A SG CYS 98 A CYS 238 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc10 A SG CYS 101 A CYS 241 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc11 A SG CYS 113 A CYS 253 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc12 A ND1 HIS 117 A HIS 257 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc13 A SG CYS 120 A CYS 260 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc14 A SG CYS 123 A CYS 263 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc15 A SG CYS 149 A CYS 289 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc16 A SG CYS 153 A CYS 293 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc17 A SG CYS 192 A CYS 332 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc18 A SG CYS 197 A CYS 337 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc19 A SG CYS 212 A CYS 352 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc20 A SG CYS 220 A CYS 360 1_555 H ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc21 A SG CYS 225 A CYS 365 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc22 A SG CYS 228 A CYS 368 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc23 A ND1 HIS 233 A HIS 373 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc24 A SG CYS 278 A CYS 418 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc25 A SG CYS 281 A CYS 421 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc26 A SG CYS 296 A CYS 436 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc27 A SG CYS 301 A CYS 441 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc28 A SG CYS 306 A CYS 446 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc29 A SG CYS 309 A CYS 449 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc30 A SG CYS 317 A CYS 457 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc31 A NE2 HIS 321 A HIS 461 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8WZO _atom_sites.fract_transf_matrix[1][1] 0.012824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 3 ZN A 1 502 502 ZN ZN . E 3 ZN A 1 503 503 ZN ZN . F 3 ZN A 1 504 504 ZN ZN . G 3 ZN A 1 505 505 ZN ZN . H 3 ZN A 1 506 506 ZN ZN . I 3 ZN A 1 507 507 ZN ZN . J 3 ZN A 1 508 508 ZN ZN . K 4 EDO A 1 509 511 EDO EDO . L 4 EDO A 1 510 513 EDO EDO . M 4 EDO A 1 511 519 EDO EDO . N 5 HOH A 1 601 135 HOH HOH . N 5 HOH A 2 602 123 HOH HOH . N 5 HOH A 3 603 149 HOH HOH . N 5 HOH A 4 604 162 HOH HOH . N 5 HOH A 5 605 65 HOH HOH . N 5 HOH A 6 606 128 HOH HOH . N 5 HOH A 7 607 114 HOH HOH . N 5 HOH A 8 608 177 HOH HOH . N 5 HOH A 9 609 101 HOH HOH . N 5 HOH A 10 610 127 HOH HOH . N 5 HOH A 11 611 29 HOH HOH . N 5 HOH A 12 612 10 HOH HOH . N 5 HOH A 13 613 156 HOH HOH . N 5 HOH A 14 614 67 HOH HOH . N 5 HOH A 15 615 108 HOH HOH . N 5 HOH A 16 616 137 HOH HOH . N 5 HOH A 17 617 119 HOH HOH . N 5 HOH A 18 618 110 HOH HOH . N 5 HOH A 19 619 87 HOH HOH . N 5 HOH A 20 620 1 HOH HOH . N 5 HOH A 21 621 129 HOH HOH . N 5 HOH A 22 622 61 HOH HOH . N 5 HOH A 23 623 48 HOH HOH . N 5 HOH A 24 624 2 HOH HOH . N 5 HOH A 25 625 180 HOH HOH . N 5 HOH A 26 626 120 HOH HOH . N 5 HOH A 27 627 100 HOH HOH . N 5 HOH A 28 628 17 HOH HOH . N 5 HOH A 29 629 9 HOH HOH . N 5 HOH A 30 630 11 HOH HOH . N 5 HOH A 31 631 105 HOH HOH . N 5 HOH A 32 632 3 HOH HOH . N 5 HOH A 33 633 82 HOH HOH . N 5 HOH A 34 634 77 HOH HOH . N 5 HOH A 35 635 136 HOH HOH . N 5 HOH A 36 636 71 HOH HOH . N 5 HOH A 37 637 27 HOH HOH . N 5 HOH A 38 638 179 HOH HOH . N 5 HOH A 39 639 12 HOH HOH . N 5 HOH A 40 640 53 HOH HOH . N 5 HOH A 41 641 33 HOH HOH . N 5 HOH A 42 642 4 HOH HOH . N 5 HOH A 43 643 115 HOH HOH . N 5 HOH A 44 644 16 HOH HOH . N 5 HOH A 45 645 21 HOH HOH . N 5 HOH A 46 646 34 HOH HOH . N 5 HOH A 47 647 54 HOH HOH . N 5 HOH A 48 648 73 HOH HOH . N 5 HOH A 49 649 121 HOH HOH . N 5 HOH A 50 650 36 HOH HOH . N 5 HOH A 51 651 93 HOH HOH . N 5 HOH A 52 652 153 HOH HOH . N 5 HOH A 53 653 13 HOH HOH . N 5 HOH A 54 654 148 HOH HOH . N 5 HOH A 55 655 95 HOH HOH . N 5 HOH A 56 656 157 HOH HOH . N 5 HOH A 57 657 32 HOH HOH . N 5 HOH A 58 658 68 HOH HOH . N 5 HOH A 59 659 124 HOH HOH . N 5 HOH A 60 660 50 HOH HOH . N 5 HOH A 61 661 18 HOH HOH . N 5 HOH A 62 662 7 HOH HOH . N 5 HOH A 63 663 143 HOH HOH . N 5 HOH A 64 664 42 HOH HOH . N 5 HOH A 65 665 155 HOH HOH . N 5 HOH A 66 666 176 HOH HOH . N 5 HOH A 67 667 22 HOH HOH . N 5 HOH A 68 668 56 HOH HOH . N 5 HOH A 69 669 154 HOH HOH . N 5 HOH A 70 670 117 HOH HOH . N 5 HOH A 71 671 47 HOH HOH . N 5 HOH A 72 672 8 HOH HOH . N 5 HOH A 73 673 99 HOH HOH . N 5 HOH A 74 674 138 HOH HOH . N 5 HOH A 75 675 182 HOH HOH . N 5 HOH A 76 676 51 HOH HOH . N 5 HOH A 77 677 26 HOH HOH . N 5 HOH A 78 678 37 HOH HOH . N 5 HOH A 79 679 15 HOH HOH . N 5 HOH A 80 680 19 HOH HOH . N 5 HOH A 81 681 40 HOH HOH . N 5 HOH A 82 682 46 HOH HOH . N 5 HOH A 83 683 163 HOH HOH . N 5 HOH A 84 684 20 HOH HOH . N 5 HOH A 85 685 174 HOH HOH . N 5 HOH A 86 686 25 HOH HOH . N 5 HOH A 87 687 52 HOH HOH . N 5 HOH A 88 688 28 HOH HOH . N 5 HOH A 89 689 130 HOH HOH . N 5 HOH A 90 690 43 HOH HOH . N 5 HOH A 91 691 158 HOH HOH . N 5 HOH A 92 692 98 HOH HOH . N 5 HOH A 93 693 181 HOH HOH . N 5 HOH A 94 694 35 HOH HOH . N 5 HOH A 95 695 125 HOH HOH . N 5 HOH A 96 696 14 HOH HOH . N 5 HOH A 97 697 113 HOH HOH . N 5 HOH A 98 698 103 HOH HOH . N 5 HOH A 99 699 107 HOH HOH . N 5 HOH A 100 700 142 HOH HOH . N 5 HOH A 101 701 39 HOH HOH . N 5 HOH A 102 702 45 HOH HOH . N 5 HOH A 103 703 74 HOH HOH . N 5 HOH A 104 704 145 HOH HOH . N 5 HOH A 105 705 160 HOH HOH . N 5 HOH A 106 706 151 HOH HOH . N 5 HOH A 107 707 150 HOH HOH . N 5 HOH A 108 708 161 HOH HOH . N 5 HOH A 109 709 55 HOH HOH . N 5 HOH A 110 710 64 HOH HOH . N 5 HOH A 111 711 80 HOH HOH . N 5 HOH A 112 712 60 HOH HOH . N 5 HOH A 113 713 146 HOH HOH . N 5 HOH A 114 714 147 HOH HOH . N 5 HOH A 115 715 104 HOH HOH . N 5 HOH A 116 716 126 HOH HOH . N 5 HOH A 117 717 139 HOH HOH . N 5 HOH A 118 718 79 HOH HOH . N 5 HOH A 119 719 84 HOH HOH . N 5 HOH A 120 720 102 HOH HOH . N 5 HOH A 121 721 23 HOH HOH . N 5 HOH A 122 722 69 HOH HOH . N 5 HOH A 123 723 86 HOH HOH . N 5 HOH A 124 724 94 HOH HOH . N 5 HOH A 125 725 92 HOH HOH . N 5 HOH A 126 726 140 HOH HOH . N 5 HOH A 127 727 90 HOH HOH . N 5 HOH A 128 728 178 HOH HOH . N 5 HOH A 129 729 173 HOH HOH . N 5 HOH A 130 730 116 HOH HOH . N 5 HOH A 131 731 144 HOH HOH . N 5 HOH A 132 732 89 HOH HOH . N 5 HOH A 133 733 141 HOH HOH . N 5 HOH A 134 734 159 HOH HOH . N 5 HOH A 135 735 57 HOH HOH . N 5 HOH A 136 736 75 HOH HOH . N 5 HOH A 137 737 31 HOH HOH . N 5 HOH A 138 738 131 HOH HOH . N 5 HOH A 139 739 66 HOH HOH . N 5 HOH A 140 740 59 HOH HOH . N 5 HOH A 141 741 72 HOH HOH . N 5 HOH A 142 742 78 HOH HOH . N 5 HOH A 143 743 134 HOH HOH . O 5 HOH B 1 101 30 HOH HOH . O 5 HOH B 2 102 111 HOH HOH . O 5 HOH B 3 103 97 HOH HOH . O 5 HOH B 4 104 58 HOH HOH . O 5 HOH B 5 105 112 HOH HOH . O 5 HOH B 6 106 62 HOH HOH . O 5 HOH B 7 107 88 HOH HOH . O 5 HOH B 8 108 5 HOH HOH . O 5 HOH B 9 109 96 HOH HOH . O 5 HOH B 10 110 167 HOH HOH . O 5 HOH B 11 111 172 HOH HOH . O 5 HOH B 12 112 38 HOH HOH . O 5 HOH B 13 113 6 HOH HOH . O 5 HOH B 14 114 70 HOH HOH . O 5 HOH B 15 115 24 HOH HOH . O 5 HOH B 16 116 76 HOH HOH . O 5 HOH B 17 117 83 HOH HOH . O 5 HOH B 18 118 164 HOH HOH . O 5 HOH B 19 119 49 HOH HOH . O 5 HOH B 20 120 91 HOH HOH . O 5 HOH B 21 121 63 HOH HOH . O 5 HOH B 22 122 81 HOH HOH . O 5 HOH B 23 123 106 HOH HOH . O 5 HOH B 24 124 165 HOH HOH . O 5 HOH B 25 125 166 HOH HOH . O 5 HOH B 26 126 171 HOH HOH . O 5 HOH B 27 127 169 HOH HOH . O 5 HOH B 28 128 175 HOH HOH . O 5 HOH B 29 129 152 HOH HOH . O 5 HOH B 30 130 109 HOH HOH . O 5 HOH B 31 131 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 4 10.671 5.057 -12.411 1 47.26 ? C1 EDO 509 A 1 HETATM 2 O O1 EDO . . . K 4 11.36 4.01 -11.755 1 48.9 ? O1 EDO 509 A 1 HETATM 3 C C2 EDO . . . K 4 11.513 5.745 -13.419 1 46.75 ? C2 EDO 509 A 1 HETATM 4 O O2 EDO . . . K 4 12.801 6.073 -12.929 1 45.53 ? O2 EDO 509 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #