data_8X0B # _model_server_result.job_id JvYPJTwVJixwceMDYhpeIA _model_server_result.datetime_utc '2024-11-18 11:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":903}' # _entry.id 8X0B # _exptl.entry_id 8X0B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 326.365 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description VU0424465 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8X0B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 57 1_555 A SG CYS 105 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 A SG CYS 247 A CYS 241 1_555 A SG CYS 536 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 282 A CYS 276 1_555 A SG CYS 284 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 371 A CYS 365 1_555 A SG CYS 387 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 425 A CYS 419 1_555 A SG CYS 432 A CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 517 A CYS 511 1_555 A SG CYS 537 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 521 A CYS 515 1_555 A SG CYS 540 A CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 543 A CYS 537 1_555 A SG CYS 555 A CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 A SG CYS 558 A CYS 552 1_555 A SG CYS 571 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 A SG CYS 650 A CYS 644 1_555 A SG CYS 739 A CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 B SG CYS 63 B CYS 57 1_555 B SG CYS 105 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf12 B SG CYS 247 B CYS 241 1_555 B SG CYS 536 B CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 B SG CYS 282 B CYS 276 1_555 B SG CYS 284 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf14 B SG CYS 371 B CYS 365 1_555 B SG CYS 387 B CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf15 B SG CYS 425 B CYS 419 1_555 B SG CYS 432 B CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf16 B SG CYS 517 B CYS 511 1_555 B SG CYS 537 B CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 B SG CYS 521 B CYS 515 1_555 B SG CYS 540 B CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf18 B SG CYS 543 B CYS 537 1_555 B SG CYS 555 B CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 558 B CYS 552 1_555 B SG CYS 571 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf20 B SG CYS 650 B CYS 644 1_555 B SG CYS 739 B CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 216 A ASN 210 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 216 B ASN 210 1_555 F C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C19 H19 F N2 O2' _chem_comp.formula_weight 326.365 _chem_comp.id XQT _chem_comp.mon_nstd_flag . _chem_comp.name VU0424465 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-[2-(3-fluorophenyl)ethynyl]-~{N}-[(2~{R})-3-methyl-3-oxidanyl-butan-2-yl]pyridine-2-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XQT sing 426 n n C4 C3 XQT sing 427 n n C2 C3 XQT sing 428 n n C2 N1 XQT sing 429 n n O2 C6 XQT doub 430 n n C3 O1 XQT sing 431 n n C3 C5 XQT sing 432 n n N1 C6 XQT sing 433 n n C6 C7 XQT sing 434 n n C7 C8 XQT doub 435 n y C7 N2 XQT sing 436 n y C8 C9 XQT sing 437 n y N2 C19 XQT doub 438 n y C9 C10 XQT doub 439 n y C19 C10 XQT sing 440 n y C10 C11 XQT sing 441 n n C11 C12 XQT trip 442 n n C12 C13 XQT sing 443 n n C14 C13 XQT doub 444 n y C14 C15 XQT sing 445 n y C13 C18 XQT sing 446 n y F1 C15 XQT sing 447 n n C15 C16 XQT doub 448 n y C18 C17 XQT doub 449 n y C16 C17 XQT sing 450 n y O1 H1 XQT sing 451 n n C1 H2 XQT sing 452 n n C1 H3 XQT sing 453 n n C1 H4 XQT sing 454 n n C2 H5 XQT sing 455 n n C4 H6 XQT sing 456 n n C4 H7 XQT sing 457 n n C4 H8 XQT sing 458 n n C5 H9 XQT sing 459 n n C5 H10 XQT sing 460 n n C5 H11 XQT sing 461 n n N1 H12 XQT sing 462 n n C8 H13 XQT sing 463 n n C9 H14 XQT sing 464 n n C14 H15 XQT sing 465 n n C16 H16 XQT sing 466 n n C17 H17 XQT sing 467 n n C18 H18 XQT sing 468 n n C19 H19 XQT sing 469 n n # _atom_sites.entry_id 8X0B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 901 901 NAG NAG . D 3 QUS A 1 902 902 QUS QUS . E 4 XQT A 1 903 903 XQT VU4 . F 2 NAG B 1 901 901 NAG NAG . G 3 QUS B 1 902 902 QUS QUS . H 4 XQT B 1 903 903 XQT VU4 . I 5 HOH A 1 1001 31 HOH HOH . I 5 HOH A 2 1002 1 HOH HOH . I 5 HOH A 3 1003 4 HOH HOH . I 5 HOH A 4 1004 22 HOH HOH . I 5 HOH A 5 1005 8 HOH HOH . I 5 HOH A 6 1006 28 HOH HOH . I 5 HOH A 7 1007 10 HOH HOH . I 5 HOH A 8 1008 5 HOH HOH . I 5 HOH A 9 1009 12 HOH HOH . I 5 HOH A 10 1010 20 HOH HOH . I 5 HOH A 11 1011 16 HOH HOH . I 5 HOH A 12 1012 13 HOH HOH . I 5 HOH A 13 1013 9 HOH HOH . I 5 HOH A 14 1014 26 HOH HOH . I 5 HOH A 15 1015 7 HOH HOH . J 5 HOH B 1 1001 6 HOH HOH . J 5 HOH B 2 1002 24 HOH HOH . J 5 HOH B 3 1003 18 HOH HOH . J 5 HOH B 4 1004 33 HOH HOH . J 5 HOH B 5 1005 32 HOH HOH . J 5 HOH B 6 1006 11 HOH HOH . J 5 HOH B 7 1007 25 HOH HOH . J 5 HOH B 8 1008 23 HOH HOH . J 5 HOH B 9 1009 3 HOH HOH . J 5 HOH B 10 1010 17 HOH HOH . J 5 HOH B 11 1011 14 HOH HOH . J 5 HOH B 12 1012 27 HOH HOH . J 5 HOH B 13 1013 21 HOH HOH . J 5 HOH B 14 1014 19 HOH HOH . J 5 HOH B 15 1015 15 HOH HOH . J 5 HOH B 16 1016 29 HOH HOH . J 5 HOH B 17 1017 30 HOH HOH . J 5 HOH B 18 1018 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 XQT . . . H 4 195.641 192.004 224.051 1 146.46 ? O1 XQT 903 B 1 HETATM 2 C C1 XQT . . . H 4 197.956 190.738 222.589 1 148.55 ? C1 XQT 903 B 1 HETATM 3 C C2 XQT . . . H 4 196.551 190.208 222.776 1 141.1 ? C2 XQT 903 B 1 HETATM 4 C C3 XQT . . . H 4 195.478 191.326 222.797 1 149.52 ? C3 XQT 903 B 1 HETATM 5 C C4 XQT . . . H 4 195.685 192.358 221.703 1 147.84 ? C4 XQT 903 B 1 HETATM 6 C C5 XQT . . . H 4 194.065 190.765 222.761 1 162.91 ? C5 XQT 903 B 1 HETATM 7 N N1 XQT . . . H 4 196.494 189.386 223.986 1 141.76 ? N1 XQT 903 B 1 HETATM 8 C C6 XQT . . . H 4 196.113 188.108 223.975 1 147.8 ? C6 XQT 903 B 1 HETATM 9 C C7 XQT . . . H 4 196.388 187.335 225.24 1 149.53 ? C7 XQT 903 B 1 HETATM 10 C C8 XQT . . . H 4 196.044 185.997 225.317 1 149.17 ? C8 XQT 903 B 1 HETATM 11 C C9 XQT . . . H 4 196.318 185.309 226.482 1 153.3 ? C9 XQT 903 B 1 HETATM 12 C C10 XQT . . . H 4 196.925 185.962 227.546 1 149.72 ? C10 XQT 903 B 1 HETATM 13 C C11 XQT . . . H 4 197.223 185.299 228.781 1 141.98 ? C11 XQT 903 B 1 HETATM 14 C C12 XQT . . . H 4 197.505 184.728 229.79 1 138.69 ? C12 XQT 903 B 1 HETATM 15 C C13 XQT . . . H 4 197.749 184.036 231.025 1 140.8 ? C13 XQT 903 B 1 HETATM 16 C C14 XQT . . . H 4 198.252 182.738 231.024 1 136.09 ? C14 XQT 903 B 1 HETATM 17 C C15 XQT . . . H 4 198.466 182.102 232.222 1 143.1 ? C15 XQT 903 B 1 HETATM 18 F F1 XQT . . . H 4 198.965 180.838 232.202 1 164.05 ? F1 XQT 903 B 1 HETATM 19 C C16 XQT . . . H 4 198.196 182.684 233.429 1 143.86 ? C16 XQT 903 B 1 HETATM 20 C C17 XQT . . . H 4 197.693 183.968 233.432 1 144.85 ? C17 XQT 903 B 1 HETATM 21 C C18 XQT . . . H 4 197.466 184.646 232.247 1 146.07 ? C18 XQT 903 B 1 HETATM 22 C C19 XQT . . . H 4 197.234 187.318 227.371 1 155.37 ? C19 XQT 903 B 1 HETATM 23 N N2 XQT . . . H 4 196.976 187.994 226.244 1 159.23 ? N2 XQT 903 B 1 HETATM 24 O O2 XQT . . . H 4 195.595 187.562 223.002 1 154.53 ? O2 XQT 903 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 495 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #