data_8X0D # _model_server_result.job_id 5pmYqhQcVOVhlscaRkaznw _model_server_result.datetime_utc '2024-11-07 04:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 8X0D # _exptl.entry_id 8X0D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 326.365 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description VU0424465 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8X0D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 57 1_555 A SG CYS 79 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 221 A CYS 241 1_555 A SG CYS 510 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 256 A CYS 276 1_555 A SG CYS 258 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 345 A CYS 365 1_555 A SG CYS 361 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 A SG CYS 399 A CYS 419 1_555 A SG CYS 406 A CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 491 A CYS 511 1_555 A SG CYS 511 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 A SG CYS 495 A CYS 515 1_555 A SG CYS 514 A CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 A SG CYS 517 A CYS 537 1_555 A SG CYS 529 A CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 A SG CYS 532 A CYS 552 1_555 A SG CYS 545 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 A SG CYS 624 A CYS 644 1_555 A SG CYS 713 A CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf11 B SG CYS 37 B CYS 57 1_555 B SG CYS 79 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf12 B SG CYS 221 B CYS 241 1_555 B SG CYS 510 B CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf13 B SG CYS 256 B CYS 276 1_555 B SG CYS 258 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf14 B SG CYS 345 B CYS 365 1_555 B SG CYS 361 B CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 B SG CYS 399 B CYS 419 1_555 B SG CYS 406 B CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf16 B SG CYS 491 B CYS 511 1_555 B SG CYS 511 B CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf17 B SG CYS 495 B CYS 515 1_555 B SG CYS 514 B CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 B SG CYS 517 B CYS 537 1_555 B SG CYS 529 B CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf19 B SG CYS 532 B CYS 552 1_555 B SG CYS 545 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf20 B SG CYS 624 B CYS 644 1_555 B SG CYS 713 B CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 190 A ASN 210 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 B ND2 ASN 190 B ASN 210 1_555 F C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C19 H19 F N2 O2' _chem_comp.formula_weight 326.365 _chem_comp.id XQT _chem_comp.mon_nstd_flag . _chem_comp.name VU0424465 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-[2-(3-fluorophenyl)ethynyl]-~{N}-[(2~{R})-3-methyl-3-oxidanyl-butan-2-yl]pyridine-2-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XQT sing 424 n n C4 C3 XQT sing 425 n n C2 C3 XQT sing 426 n n C2 N1 XQT sing 427 n n O2 C6 XQT doub 428 n n C3 O1 XQT sing 429 n n C3 C5 XQT sing 430 n n N1 C6 XQT sing 431 n n C6 C7 XQT sing 432 n n C7 C8 XQT doub 433 n y C7 N2 XQT sing 434 n y C8 C9 XQT sing 435 n y N2 C19 XQT doub 436 n y C9 C10 XQT doub 437 n y C19 C10 XQT sing 438 n y C10 C11 XQT sing 439 n n C11 C12 XQT trip 440 n n C12 C13 XQT sing 441 n n C14 C13 XQT doub 442 n y C14 C15 XQT sing 443 n y C13 C18 XQT sing 444 n y F1 C15 XQT sing 445 n n C15 C16 XQT doub 446 n y C18 C17 XQT doub 447 n y C16 C17 XQT sing 448 n y O1 H1 XQT sing 449 n n C1 H2 XQT sing 450 n n C1 H3 XQT sing 451 n n C1 H4 XQT sing 452 n n C2 H5 XQT sing 453 n n C4 H6 XQT sing 454 n n C4 H7 XQT sing 455 n n C4 H8 XQT sing 456 n n C5 H9 XQT sing 457 n n C5 H10 XQT sing 458 n n C5 H11 XQT sing 459 n n N1 H12 XQT sing 460 n n C8 H13 XQT sing 461 n n C9 H14 XQT sing 462 n n C14 H15 XQT sing 463 n n C16 H16 XQT sing 464 n n C17 H17 XQT sing 465 n n C18 H18 XQT sing 466 n n C19 H19 XQT sing 467 n n # _atom_sites.entry_id 8X0D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 901 901 NAG NAG . D 3 QUS A 1 902 902 QUS QUS . E 4 XQT A 1 903 903 XQT XQT . F 2 NAG B 1 901 901 NAG NAG . G 3 QUS B 1 902 902 QUS QUS . H 4 XQT B 1 903 903 XQT XQT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 XQT . . . E 4 139.463 129.497 166.743 1 70.85 ? O1 XQT 903 A 1 HETATM 2 C C1 XQT . . . E 4 140.496 131.615 165.059 1 70.24 ? C1 XQT 903 A 1 HETATM 3 C C2 XQT . . . E 4 141.287 130.4 165.492 1 70.09 ? C2 XQT 903 A 1 HETATM 4 C C3 XQT . . . E 4 140.402 129.143 165.714 1 71.4 ? C3 XQT 903 A 1 HETATM 5 C C4 XQT . . . E 4 139.616 128.765 164.468 1 71.89 ? C4 XQT 903 A 1 HETATM 6 C C5 XQT . . . E 4 141.199 127.956 166.231 1 71.87 ? C5 XQT 903 A 1 HETATM 7 N N1 XQT . . . E 4 142.058 130.733 166.691 1 70.13 ? N1 XQT 903 A 1 HETATM 8 C C6 XQT . . . E 4 143.379 130.585 166.774 1 70.22 ? C6 XQT 903 A 1 HETATM 9 C C7 XQT . . . E 4 144.021 131.136 168.022 1 69.38 ? C7 XQT 903 A 1 HETATM 10 C C8 XQT . . . E 4 145.392 131.037 168.184 1 68.81 ? C8 XQT 903 A 1 HETATM 11 C C9 XQT . . . E 4 145.962 131.552 169.332 1 69.44 ? C9 XQT 903 A 1 HETATM 12 C C10 XQT . . . E 4 145.161 132.142 170.3 1 68.41 ? C10 XQT 903 A 1 HETATM 13 C C11 XQT . . . E 4 145.701 132.692 171.51 1 69.16 ? C11 XQT 903 A 1 HETATM 14 C C12 XQT . . . E 4 146.197 133.117 172.51 1 71.81 ? C12 XQT 903 A 1 HETATM 15 C C13 XQT . . . E 4 146.731 133.615 173.747 1 74.63 ? C13 XQT 903 A 1 HETATM 16 C C14 XQT . . . E 4 148.106 133.69 173.945 1 76.54 ? C14 XQT 903 A 1 HETATM 17 C C15 XQT . . . E 4 148.586 134.17 175.137 1 78.08 ? C15 XQT 903 A 1 HETATM 18 F F1 XQT . . . E 4 149.932 134.233 175.318 1 80.74 ? F1 XQT 903 A 1 HETATM 19 C C16 XQT . . . E 4 147.771 134.588 176.152 1 76.7 ? C16 XQT 903 A 1 HETATM 20 C C17 XQT . . . E 4 146.408 134.519 175.957 1 75.62 ? C17 XQT 903 A 1 HETATM 21 C C18 XQT . . . E 4 145.883 134.042 174.769 1 75.31 ? C18 XQT 903 A 1 HETATM 22 C C19 XQT . . . E 4 143.782 132.193 170.044 1 67.73 ? C19 XQT 903 A 1 HETATM 23 N N2 XQT . . . E 4 143.218 131.703 168.932 1 68.61 ? N2 XQT 903 A 1 HETATM 24 O O2 XQT . . . E 4 144.061 130.052 165.901 1 70.83 ? O2 XQT 903 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 24 #