data_8X0F # _model_server_result.job_id KFdo7Yz4vWABiVNzqyZJtw _model_server_result.datetime_utc '2024-11-07 05:51:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 8X0F # _exptl.entry_id 8X0F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 384.387 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description VU29 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8X0F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 57 1_555 A SG CYS 79 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 221 A CYS 241 1_555 A SG CYS 510 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 256 A CYS 276 1_555 A SG CYS 258 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 345 A CYS 365 1_555 A SG CYS 361 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 399 A CYS 419 1_555 A SG CYS 406 A CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 491 A CYS 511 1_555 A SG CYS 511 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 495 A CYS 515 1_555 A SG CYS 514 A CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 517 A CYS 537 1_555 A SG CYS 529 A CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 A SG CYS 532 A CYS 552 1_555 A SG CYS 545 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 A SG CYS 624 A CYS 644 1_555 A SG CYS 713 A CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 37 B CYS 57 1_555 B SG CYS 79 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 B SG CYS 221 B CYS 241 1_555 B SG CYS 510 B CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf13 B SG CYS 256 B CYS 276 1_555 B SG CYS 258 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 B SG CYS 345 B CYS 365 1_555 B SG CYS 361 B CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf15 B SG CYS 399 B CYS 419 1_555 B SG CYS 406 B CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 B SG CYS 491 B CYS 511 1_555 B SG CYS 511 B CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf17 B SG CYS 495 B CYS 515 1_555 B SG CYS 514 B CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf18 B SG CYS 517 B CYS 537 1_555 B SG CYS 529 B CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 B SG CYS 532 B CYS 552 1_555 B SG CYS 545 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 B SG CYS 624 B CYS 644 1_555 B SG CYS 713 B CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 190 A ASN 210 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 190 B ASN 210 1_555 F C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C22 H16 N4 O3' _chem_comp.formula_weight 384.387 _chem_comp.id XRQ _chem_comp.mon_nstd_flag . _chem_comp.name VU29 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(1,3-Diphenyl-1H-pyrazolo-5-yl)-4-nitrobenzamide;~{N}-(2,5-diphenylpyrazol-3-yl)-4-nitro-benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 XRQ doub 424 n y C14 C13 XRQ sing 425 n y C15 C16 XRQ sing 426 n y C13 C12 XRQ doub 427 n y C16 C11 XRQ doub 428 n y C12 C11 XRQ sing 429 n y C11 C10 XRQ sing 430 n n C10 C9 XRQ sing 431 n y C10 N3 XRQ doub 432 n y C9 C8 XRQ doub 433 n y N3 N4 XRQ sing 434 n y C8 N4 XRQ sing 435 n y C8 N2 XRQ sing 436 n n N4 C17 XRQ sing 437 n n N2 C1 XRQ sing 438 n n C17 C22 XRQ doub 439 n y C17 C18 XRQ sing 440 n y C22 C21 XRQ sing 441 n y O1 C1 XRQ doub 442 n n C1 C2 XRQ sing 443 n n C18 C19 XRQ doub 444 n y C21 C20 XRQ doub 445 n y C2 C3 XRQ doub 446 n y C2 C7 XRQ sing 447 n y C3 C4 XRQ sing 448 n y C19 C20 XRQ sing 449 n y C7 C6 XRQ doub 450 n y C4 C5 XRQ doub 451 n y C6 C5 XRQ sing 452 n y C5 N1 XRQ sing 453 n n N1 O2 XRQ doub 454 n n N1 O3 XRQ doub 455 n n C3 H1 XRQ sing 456 n n C7 H2 XRQ sing 457 n n C9 H3 XRQ sing 458 n n C12 H4 XRQ sing 459 n n C13 H5 XRQ sing 460 n n C14 H6 XRQ sing 461 n n C15 H7 XRQ sing 462 n n N2 H8 XRQ sing 463 n n C4 H9 XRQ sing 464 n n C6 H10 XRQ sing 465 n n C16 H11 XRQ sing 466 n n C18 H12 XRQ sing 467 n n C19 H13 XRQ sing 468 n n C20 H14 XRQ sing 469 n n C21 H15 XRQ sing 470 n n C22 H16 XRQ sing 471 n n # _atom_sites.entry_id 8X0F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 901 901 NAG NAG . D 3 QUS A 1 902 902 QUS QUS . E 4 XRQ A 1 903 903 XRQ VU2 . F 2 NAG B 1 901 901 NAG NAG . G 3 QUS B 1 902 902 QUS QUS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XRQ . . . E 4 182.199 163.812 203.766 1 181.89 ? C1 XRQ 903 A 1 HETATM 2 C C2 XRQ . . . E 4 182.156 163.448 205.205 1 181.9 ? C2 XRQ 903 A 1 HETATM 3 C C3 XRQ . . . E 4 182.094 162.115 205.591 1 180.86 ? C3 XRQ 903 A 1 HETATM 4 C C7 XRQ . . . E 4 182.128 164.44 206.18 1 182.08 ? C7 XRQ 903 A 1 HETATM 5 C C9 XRQ . . . E 4 180.959 162.509 200.557 1 180.68 ? C9 XRQ 903 A 1 HETATM 6 C C10 XRQ . . . E 4 179.699 162.847 200.039 1 181.38 ? C10 XRQ 903 A 1 HETATM 7 C C11 XRQ . . . E 4 179.15 162.657 198.686 1 181.79 ? C11 XRQ 903 A 1 HETATM 8 C C12 XRQ . . . E 4 177.943 163.246 198.324 1 181.43 ? C12 XRQ 903 A 1 HETATM 9 C C13 XRQ . . . E 4 177.421 163.068 197.056 1 180.56 ? C13 XRQ 903 A 1 HETATM 10 C C14 XRQ . . . E 4 178.087 162.291 196.137 1 181.65 ? C14 XRQ 903 A 1 HETATM 11 C C15 XRQ . . . E 4 179.277 161.692 196.482 1 182.25 ? C15 XRQ 903 A 1 HETATM 12 N N2 XRQ . . . E 4 181.929 162.819 202.878 1 181.33 ? N2 XRQ 903 A 1 HETATM 13 C C4 XRQ . . . E 4 182.034 161.761 206.923 1 180.64 ? C4 XRQ 903 A 1 HETATM 14 C C5 XRQ . . . E 4 182.021 162.776 207.875 1 180.13 ? C5 XRQ 903 A 1 HETATM 15 C C6 XRQ . . . E 4 182.067 164.121 207.521 1 180.36 ? C6 XRQ 903 A 1 HETATM 16 O O1 XRQ . . . E 4 182.347 164.972 203.418 1 182.99 ? O1 XRQ 903 A 1 HETATM 17 C C8 XRQ . . . E 4 180.945 162.918 201.91 1 180.53 ? C8 XRQ 903 A 1 HETATM 18 C C16 XRQ . . . E 4 179.806 161.865 197.749 1 181.93 ? C16 XRQ 903 A 1 HETATM 19 C C17 XRQ . . . E 4 179.15 163.969 203.337 1 180.25 ? C17 XRQ 903 A 1 HETATM 20 C C18 XRQ . . . E 4 179.07 163.159 204.453 1 180.22 ? C18 XRQ 903 A 1 HETATM 21 C C19 XRQ . . . E 4 178.522 163.666 205.618 1 180.3 ? C19 XRQ 903 A 1 HETATM 22 C C20 XRQ . . . E 4 178.075 164.965 205.67 1 181.91 ? C20 XRQ 903 A 1 HETATM 23 C C21 XRQ . . . E 4 178.169 165.767 204.556 1 182.91 ? C21 XRQ 903 A 1 HETATM 24 C C22 XRQ . . . E 4 178.711 165.277 203.381 1 181.63 ? C22 XRQ 903 A 1 HETATM 25 N N1 XRQ . . . E 4 181.954 162.416 209.282 1 180.87 ? N1 XRQ 903 A 1 HETATM 26 N N3 XRQ . . . E 4 178.944 163.398 200.993 1 181.99 ? N3 XRQ 903 A 1 HETATM 27 N N4 XRQ . . . E 4 179.715 163.452 202.136 1 179.97 ? N4 XRQ 903 A 1 HETATM 28 O O2 XRQ . . . E 4 181.978 161.232 209.575 1 182.61 ? O2 XRQ 903 A 1 HETATM 29 O O3 XRQ . . . E 4 181.86 163.311 210.104 1 180.56 ? O3 XRQ 903 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #