data_8X1A # _model_server_result.job_id iAr3kYy0hK1CGpA1jVqHAw _model_server_result.datetime_utc '2024-10-16 23:25:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8X1A # _exptl.entry_id 8X1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8X1A _cell.length_a 57.288 _cell.length_b 63.312 _cell.length_c 75.323 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 B CYS 8 1_555 A SG CYS 18 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? disulf ? disulf2 A SG CYS 129 B CYS 126 1_555 A SG CYS 225 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6P sing 83 n n C1 O1 G6P sing 84 n n C1 O5 G6P sing 85 n n C1 H1 G6P sing 86 n n C2 C3 G6P sing 87 n n C2 O2 G6P sing 88 n n C2 H2 G6P sing 89 n n C3 C4 G6P sing 90 n n C3 O3 G6P sing 91 n n C3 H3 G6P sing 92 n n C4 C5 G6P sing 93 n n C4 O4 G6P sing 94 n n C4 H4 G6P sing 95 n n C5 C6 G6P sing 96 n n C5 O5 G6P sing 97 n n C5 H5 G6P sing 98 n n C6 O6 G6P sing 99 n n C6 H61 G6P sing 100 n n C6 H62 G6P sing 101 n n O1 HO1 G6P sing 102 n n O2 HO2 G6P sing 103 n n O3 HO3 G6P sing 104 n n O4 HO4 G6P sing 105 n n O6 P G6P sing 106 n n P O1P G6P sing 107 n n P O2P G6P sing 108 n n P O3P G6P doub 109 n n O1P HO1P G6P sing 110 n n O2P HO2P G6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8X1A _atom_sites.fract_transf_matrix[1][1] 0.017456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G6P B 1 401 401 G6P G6P . C 3 HOH B 1 501 109 HOH HOH . C 3 HOH B 2 502 118 HOH HOH . C 3 HOH B 3 503 27 HOH HOH . C 3 HOH B 4 504 121 HOH HOH . C 3 HOH B 5 505 111 HOH HOH . C 3 HOH B 6 506 78 HOH HOH . C 3 HOH B 7 507 114 HOH HOH . C 3 HOH B 8 508 205 HOH HOH . C 3 HOH B 9 509 8 HOH HOH . C 3 HOH B 10 510 116 HOH HOH . C 3 HOH B 11 511 112 HOH HOH . C 3 HOH B 12 512 120 HOH HOH . C 3 HOH B 13 513 233 HOH HOH . C 3 HOH B 14 514 24 HOH HOH . C 3 HOH B 15 515 77 HOH HOH . C 3 HOH B 16 516 173 HOH HOH . C 3 HOH B 17 517 13 HOH HOH . C 3 HOH B 18 518 31 HOH HOH . C 3 HOH B 19 519 48 HOH HOH . C 3 HOH B 20 520 123 HOH HOH . C 3 HOH B 21 521 96 HOH HOH . C 3 HOH B 22 522 180 HOH HOH . C 3 HOH B 23 523 70 HOH HOH . C 3 HOH B 24 524 200 HOH HOH . C 3 HOH B 25 525 115 HOH HOH . C 3 HOH B 26 526 55 HOH HOH . C 3 HOH B 27 527 52 HOH HOH . C 3 HOH B 28 528 177 HOH HOH . C 3 HOH B 29 529 2 HOH HOH . C 3 HOH B 30 530 201 HOH HOH . C 3 HOH B 31 531 42 HOH HOH . C 3 HOH B 32 532 37 HOH HOH . C 3 HOH B 33 533 145 HOH HOH . C 3 HOH B 34 534 124 HOH HOH . C 3 HOH B 35 535 18 HOH HOH . C 3 HOH B 36 536 1 HOH HOH . C 3 HOH B 37 537 10 HOH HOH . C 3 HOH B 38 538 40 HOH HOH . C 3 HOH B 39 539 5 HOH HOH . C 3 HOH B 40 540 117 HOH HOH . C 3 HOH B 41 541 14 HOH HOH . C 3 HOH B 42 542 34 HOH HOH . C 3 HOH B 43 543 134 HOH HOH . C 3 HOH B 44 544 101 HOH HOH . C 3 HOH B 45 545 21 HOH HOH . C 3 HOH B 46 546 72 HOH HOH . C 3 HOH B 47 547 86 HOH HOH . C 3 HOH B 48 548 80 HOH HOH . C 3 HOH B 49 549 3 HOH HOH . C 3 HOH B 50 550 23 HOH HOH . C 3 HOH B 51 551 67 HOH HOH . C 3 HOH B 52 552 65 HOH HOH . C 3 HOH B 53 553 46 HOH HOH . C 3 HOH B 54 554 98 HOH HOH . C 3 HOH B 55 555 82 HOH HOH . C 3 HOH B 56 556 113 HOH HOH . C 3 HOH B 57 557 81 HOH HOH . C 3 HOH B 58 558 36 HOH HOH . C 3 HOH B 59 559 162 HOH HOH . C 3 HOH B 60 560 19 HOH HOH . C 3 HOH B 61 561 25 HOH HOH . C 3 HOH B 62 562 122 HOH HOH . C 3 HOH B 63 563 15 HOH HOH . C 3 HOH B 64 564 100 HOH HOH . C 3 HOH B 65 565 32 HOH HOH . C 3 HOH B 66 566 41 HOH HOH . C 3 HOH B 67 567 75 HOH HOH . C 3 HOH B 68 568 6 HOH HOH . C 3 HOH B 69 569 161 HOH HOH . C 3 HOH B 70 570 119 HOH HOH . C 3 HOH B 71 571 7 HOH HOH . C 3 HOH B 72 572 66 HOH HOH . C 3 HOH B 73 573 95 HOH HOH . C 3 HOH B 74 574 226 HOH HOH . C 3 HOH B 75 575 9 HOH HOH . C 3 HOH B 76 576 30 HOH HOH . C 3 HOH B 77 577 84 HOH HOH . C 3 HOH B 78 578 43 HOH HOH . C 3 HOH B 79 579 85 HOH HOH . C 3 HOH B 80 580 106 HOH HOH . C 3 HOH B 81 581 68 HOH HOH . C 3 HOH B 82 582 17 HOH HOH . C 3 HOH B 83 583 210 HOH HOH . C 3 HOH B 84 584 179 HOH HOH . C 3 HOH B 85 585 148 HOH HOH . C 3 HOH B 86 586 138 HOH HOH . C 3 HOH B 87 587 57 HOH HOH . C 3 HOH B 88 588 90 HOH HOH . C 3 HOH B 89 589 227 HOH HOH . C 3 HOH B 90 590 45 HOH HOH . C 3 HOH B 91 591 51 HOH HOH . C 3 HOH B 92 592 171 HOH HOH . C 3 HOH B 93 593 29 HOH HOH . C 3 HOH B 94 594 53 HOH HOH . C 3 HOH B 95 595 28 HOH HOH . C 3 HOH B 96 596 196 HOH HOH . C 3 HOH B 97 597 102 HOH HOH . C 3 HOH B 98 598 89 HOH HOH . C 3 HOH B 99 599 105 HOH HOH . C 3 HOH B 100 600 59 HOH HOH . C 3 HOH B 101 601 169 HOH HOH . C 3 HOH B 102 602 20 HOH HOH . C 3 HOH B 103 603 87 HOH HOH . C 3 HOH B 104 604 110 HOH HOH . C 3 HOH B 105 605 108 HOH HOH . C 3 HOH B 106 606 99 HOH HOH . C 3 HOH B 107 607 47 HOH HOH . C 3 HOH B 108 608 147 HOH HOH . C 3 HOH B 109 609 62 HOH HOH . C 3 HOH B 110 610 22 HOH HOH . C 3 HOH B 111 611 139 HOH HOH . C 3 HOH B 112 612 16 HOH HOH . C 3 HOH B 113 613 178 HOH HOH . C 3 HOH B 114 614 127 HOH HOH . C 3 HOH B 115 615 104 HOH HOH . C 3 HOH B 116 616 184 HOH HOH . C 3 HOH B 117 617 130 HOH HOH . C 3 HOH B 118 618 69 HOH HOH . C 3 HOH B 119 619 49 HOH HOH . C 3 HOH B 120 620 56 HOH HOH . C 3 HOH B 121 621 4 HOH HOH . C 3 HOH B 122 622 126 HOH HOH . C 3 HOH B 123 623 209 HOH HOH . C 3 HOH B 124 624 129 HOH HOH . C 3 HOH B 125 625 91 HOH HOH . C 3 HOH B 126 626 79 HOH HOH . C 3 HOH B 127 627 189 HOH HOH . C 3 HOH B 128 628 26 HOH HOH . C 3 HOH B 129 629 60 HOH HOH . C 3 HOH B 130 630 152 HOH HOH . C 3 HOH B 131 631 146 HOH HOH . C 3 HOH B 132 632 11 HOH HOH . C 3 HOH B 133 633 39 HOH HOH . C 3 HOH B 134 634 208 HOH HOH . C 3 HOH B 135 635 63 HOH HOH . C 3 HOH B 136 636 218 HOH HOH . C 3 HOH B 137 637 137 HOH HOH . C 3 HOH B 138 638 229 HOH HOH . C 3 HOH B 139 639 93 HOH HOH . C 3 HOH B 140 640 107 HOH HOH . C 3 HOH B 141 641 141 HOH HOH . C 3 HOH B 142 642 142 HOH HOH . C 3 HOH B 143 643 76 HOH HOH . C 3 HOH B 144 644 144 HOH HOH . C 3 HOH B 145 645 88 HOH HOH . C 3 HOH B 146 646 128 HOH HOH . C 3 HOH B 147 647 156 HOH HOH . C 3 HOH B 148 648 50 HOH HOH . C 3 HOH B 149 649 94 HOH HOH . C 3 HOH B 150 650 71 HOH HOH . C 3 HOH B 151 651 132 HOH HOH . C 3 HOH B 152 652 44 HOH HOH . C 3 HOH B 153 653 133 HOH HOH . C 3 HOH B 154 654 35 HOH HOH . C 3 HOH B 155 655 136 HOH HOH . C 3 HOH B 156 656 203 HOH HOH . C 3 HOH B 157 657 158 HOH HOH . C 3 HOH B 158 658 12 HOH HOH . C 3 HOH B 159 659 191 HOH HOH . C 3 HOH B 160 660 54 HOH HOH . C 3 HOH B 161 661 38 HOH HOH . C 3 HOH B 162 662 197 HOH HOH . C 3 HOH B 163 663 216 HOH HOH . C 3 HOH B 164 664 64 HOH HOH . C 3 HOH B 165 665 202 HOH HOH . C 3 HOH B 166 666 131 HOH HOH . C 3 HOH B 167 667 140 HOH HOH . C 3 HOH B 168 668 176 HOH HOH . C 3 HOH B 169 669 168 HOH HOH . C 3 HOH B 170 670 92 HOH HOH . C 3 HOH B 171 671 211 HOH HOH . C 3 HOH B 172 672 204 HOH HOH . C 3 HOH B 173 673 149 HOH HOH . C 3 HOH B 174 674 33 HOH HOH . C 3 HOH B 175 675 224 HOH HOH . C 3 HOH B 176 676 74 HOH HOH . C 3 HOH B 177 677 217 HOH HOH . C 3 HOH B 178 678 220 HOH HOH . C 3 HOH B 179 679 222 HOH HOH . C 3 HOH B 180 680 188 HOH HOH . C 3 HOH B 181 681 181 HOH HOH . C 3 HOH B 182 682 58 HOH HOH . C 3 HOH B 183 683 199 HOH HOH . C 3 HOH B 184 684 167 HOH HOH . C 3 HOH B 185 685 159 HOH HOH . C 3 HOH B 186 686 150 HOH HOH . C 3 HOH B 187 687 230 HOH HOH . C 3 HOH B 188 688 213 HOH HOH . C 3 HOH B 189 689 194 HOH HOH . C 3 HOH B 190 690 182 HOH HOH . C 3 HOH B 191 691 73 HOH HOH . C 3 HOH B 192 692 185 HOH HOH . C 3 HOH B 193 693 143 HOH HOH . C 3 HOH B 194 694 183 HOH HOH . C 3 HOH B 195 695 221 HOH HOH . C 3 HOH B 196 696 83 HOH HOH . C 3 HOH B 197 697 166 HOH HOH . C 3 HOH B 198 698 187 HOH HOH . C 3 HOH B 199 699 103 HOH HOH . C 3 HOH B 200 700 61 HOH HOH . C 3 HOH B 201 701 165 HOH HOH . C 3 HOH B 202 702 163 HOH HOH . C 3 HOH B 203 703 212 HOH HOH . C 3 HOH B 204 704 153 HOH HOH . C 3 HOH B 205 705 172 HOH HOH . C 3 HOH B 206 706 155 HOH HOH . C 3 HOH B 207 707 164 HOH HOH . C 3 HOH B 208 708 135 HOH HOH . C 3 HOH B 209 709 192 HOH HOH . C 3 HOH B 210 710 214 HOH HOH . C 3 HOH B 211 711 190 HOH HOH . C 3 HOH B 212 712 198 HOH HOH . C 3 HOH B 213 713 231 HOH HOH . C 3 HOH B 214 714 125 HOH HOH . C 3 HOH B 215 715 160 HOH HOH . C 3 HOH B 216 716 175 HOH HOH . C 3 HOH B 217 717 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6P . A . B 2 -0.562 -4.695 7.076 0.85 21.2 ? C1 G6P 401 B 1 HETATM 2 C C2 G6P . A . B 2 -1.526 -4.616 8.215 0.85 11.3 ? C2 G6P 401 B 1 HETATM 3 C C3 G6P . A . B 2 -2.946 -4.724 7.785 0.85 6.34 ? C3 G6P 401 B 1 HETATM 4 C C4 G6P . A . B 2 -3.286 -4.045 6.478 0.85 5.11 ? C4 G6P 401 B 1 HETATM 5 C C5 G6P . A . B 2 -2.502 -4.698 5.341 0.85 7.99 ? C5 G6P 401 B 1 HETATM 6 C C6 G6P . A . B 2 -2.54 -3.959 4.024 0.85 7.66 ? C6 G6P 401 B 1 HETATM 7 O O1 G6P . A . B 2 0.607 -5.412 7.282 0.85 12.31 ? O1 G6P 401 B 1 HETATM 8 O O2 G6P . A . B 2 -1.218 -5.522 9.318 0.85 7.88 ? O2 G6P 401 B 1 HETATM 9 O O3 G6P . A . B 2 -3.644 -4.095 8.862 0.85 7.16 ? O3 G6P 401 B 1 HETATM 10 O O4 G6P . A . B 2 -4.669 -4.16 6.134 0.85 7.09 ? O4 G6P 401 B 1 HETATM 11 O O5 G6P . A . B 2 -1.1 -4.683 5.69 0.85 9.79 ? O5 G6P 401 B 1 HETATM 12 O O6 G6P . A . B 2 -1.628 -4.641 3.147 0.85 6.89 ? O6 G6P 401 B 1 HETATM 13 P P G6P . A . B 2 -1.137 -4.056 1.748 0.85 7.29 ? P G6P 401 B 1 HETATM 14 O O1P G6P . A . B 2 -0.668 -2.648 1.991 0.85 6.4 ? O1P G6P 401 B 1 HETATM 15 O O2P G6P . A . B 2 -0.019 -4.942 1.275 0.85 9.81 1 O2P G6P 401 B 1 HETATM 16 O O3P G6P . A . B 2 -2.306 -4.075 0.819 0.85 6.97 ? O3P G6P 401 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #