data_8X1F
#
_model_server_result.job_id            TWA53BSx-nu3PpMvPziSJQ 
_model_server_result.datetime_utc      '2024-10-30 15:21:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8x1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8X1F 
#
_exptl.entry_id    8X1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.56 
_cell.angle_gamma         90 
_cell.entry_id            8X1F 
_cell.length_a            94.436 
_cell.length_b            113.983 
_cell.length_c            101.424 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8X1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     8X1F 
_atom_sites.fract_transf_matrix[1][1]    0.010589 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000289 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008773 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 401 2 PLP PLP . 
D 2 PLP B 1 401 1 PLP PLP . 
E 3 HOH A 1 501 110 HOH HOH . 
E 3 HOH A 2 502 15 HOH HOH . 
E 3 HOH A 3 503 60 HOH HOH . 
E 3 HOH A 4 504 48 HOH HOH . 
E 3 HOH A 5 505 157 HOH HOH . 
E 3 HOH A 6 506 67 HOH HOH . 
E 3 HOH A 7 507 92 HOH HOH . 
E 3 HOH A 8 508 3 HOH HOH . 
E 3 HOH A 9 509 12 HOH HOH . 
E 3 HOH A 10 510 81 HOH HOH . 
E 3 HOH A 11 511 34 HOH HOH . 
E 3 HOH A 12 512 97 HOH HOH . 
E 3 HOH A 13 513 30 HOH HOH . 
E 3 HOH A 14 514 154 HOH HOH . 
E 3 HOH A 15 515 54 HOH HOH . 
E 3 HOH A 16 516 103 HOH HOH . 
E 3 HOH A 17 517 87 HOH HOH . 
E 3 HOH A 18 518 111 HOH HOH . 
E 3 HOH A 19 519 83 HOH HOH . 
E 3 HOH A 20 520 136 HOH HOH . 
E 3 HOH A 21 521 158 HOH HOH . 
E 3 HOH A 22 522 24 HOH HOH . 
E 3 HOH A 23 523 32 HOH HOH . 
E 3 HOH A 24 524 43 HOH HOH . 
E 3 HOH A 25 525 162 HOH HOH . 
E 3 HOH A 26 526 138 HOH HOH . 
E 3 HOH A 27 527 47 HOH HOH . 
E 3 HOH A 28 528 131 HOH HOH . 
E 3 HOH A 29 529 93 HOH HOH . 
E 3 HOH A 30 530 134 HOH HOH . 
E 3 HOH A 31 531 49 HOH HOH . 
E 3 HOH A 32 532 37 HOH HOH . 
E 3 HOH A 33 533 101 HOH HOH . 
E 3 HOH A 34 534 66 HOH HOH . 
E 3 HOH A 35 535 94 HOH HOH . 
E 3 HOH A 36 536 5 HOH HOH . 
E 3 HOH A 37 537 58 HOH HOH . 
E 3 HOH A 38 538 142 HOH HOH . 
E 3 HOH A 39 539 39 HOH HOH . 
E 3 HOH A 40 540 11 HOH HOH . 
E 3 HOH A 41 541 119 HOH HOH . 
E 3 HOH A 42 542 151 HOH HOH . 
E 3 HOH A 43 543 99 HOH HOH . 
E 3 HOH A 44 544 71 HOH HOH . 
E 3 HOH A 45 545 153 HOH HOH . 
E 3 HOH A 46 546 98 HOH HOH . 
E 3 HOH A 47 547 144 HOH HOH . 
E 3 HOH A 48 548 31 HOH HOH . 
E 3 HOH A 49 549 29 HOH HOH . 
E 3 HOH A 50 550 143 HOH HOH . 
E 3 HOH A 51 551 44 HOH HOH . 
E 3 HOH A 52 552 113 HOH HOH . 
E 3 HOH A 53 553 50 HOH HOH . 
E 3 HOH A 54 554 42 HOH HOH . 
E 3 HOH A 55 555 112 HOH HOH . 
E 3 HOH A 56 556 28 HOH HOH . 
E 3 HOH A 57 557 51 HOH HOH . 
E 3 HOH A 58 558 139 HOH HOH . 
E 3 HOH A 59 559 64 HOH HOH . 
E 3 HOH A 60 560 127 HOH HOH . 
E 3 HOH A 61 561 61 HOH HOH . 
E 3 HOH A 62 562 141 HOH HOH . 
E 3 HOH A 63 563 22 HOH HOH . 
E 3 HOH A 64 564 68 HOH HOH . 
E 3 HOH A 65 565 105 HOH HOH . 
E 3 HOH A 66 566 140 HOH HOH . 
E 3 HOH A 67 567 100 HOH HOH . 
E 3 HOH A 68 568 104 HOH HOH . 
E 3 HOH A 69 569 118 HOH HOH . 
E 3 HOH A 70 570 13 HOH HOH . 
E 3 HOH A 71 571 124 HOH HOH . 
E 3 HOH A 72 572 107 HOH HOH . 
E 3 HOH A 73 573 123 HOH HOH . 
E 3 HOH A 74 574 148 HOH HOH . 
E 3 HOH A 75 575 122 HOH HOH . 
E 3 HOH A 76 576 121 HOH HOH . 
F 3 HOH B 1 501 156 HOH HOH . 
F 3 HOH B 2 502 147 HOH HOH . 
F 3 HOH B 3 503 72 HOH HOH . 
F 3 HOH B 4 504 25 HOH HOH . 
F 3 HOH B 5 505 88 HOH HOH . 
F 3 HOH B 6 506 155 HOH HOH . 
F 3 HOH B 7 507 135 HOH HOH . 
F 3 HOH B 8 508 26 HOH HOH . 
F 3 HOH B 9 509 86 HOH HOH . 
F 3 HOH B 10 510 90 HOH HOH . 
F 3 HOH B 11 511 17 HOH HOH . 
F 3 HOH B 12 512 41 HOH HOH . 
F 3 HOH B 13 513 108 HOH HOH . 
F 3 HOH B 14 514 38 HOH HOH . 
F 3 HOH B 15 515 46 HOH HOH . 
F 3 HOH B 16 516 4 HOH HOH . 
F 3 HOH B 17 517 84 HOH HOH . 
F 3 HOH B 18 518 69 HOH HOH . 
F 3 HOH B 19 519 1 HOH HOH . 
F 3 HOH B 20 520 129 HOH HOH . 
F 3 HOH B 21 521 20 HOH HOH . 
F 3 HOH B 22 522 91 HOH HOH . 
F 3 HOH B 23 523 40 HOH HOH . 
F 3 HOH B 24 524 65 HOH HOH . 
F 3 HOH B 25 525 70 HOH HOH . 
F 3 HOH B 26 526 7 HOH HOH . 
F 3 HOH B 27 527 133 HOH HOH . 
F 3 HOH B 28 528 82 HOH HOH . 
F 3 HOH B 29 529 21 HOH HOH . 
F 3 HOH B 30 530 57 HOH HOH . 
F 3 HOH B 31 531 56 HOH HOH . 
F 3 HOH B 32 532 6 HOH HOH . 
F 3 HOH B 33 533 9 HOH HOH . 
F 3 HOH B 34 534 117 HOH HOH . 
F 3 HOH B 35 535 77 HOH HOH . 
F 3 HOH B 36 536 146 HOH HOH . 
F 3 HOH B 37 537 76 HOH HOH . 
F 3 HOH B 38 538 160 HOH HOH . 
F 3 HOH B 39 539 59 HOH HOH . 
F 3 HOH B 40 540 27 HOH HOH . 
F 3 HOH B 41 541 114 HOH HOH . 
F 3 HOH B 42 542 55 HOH HOH . 
F 3 HOH B 43 543 78 HOH HOH . 
F 3 HOH B 44 544 10 HOH HOH . 
F 3 HOH B 45 545 80 HOH HOH . 
F 3 HOH B 46 546 95 HOH HOH . 
F 3 HOH B 47 547 18 HOH HOH . 
F 3 HOH B 48 548 2 HOH HOH . 
F 3 HOH B 49 549 16 HOH HOH . 
F 3 HOH B 50 550 52 HOH HOH . 
F 3 HOH B 51 551 137 HOH HOH . 
F 3 HOH B 52 552 150 HOH HOH . 
F 3 HOH B 53 553 159 HOH HOH . 
F 3 HOH B 54 554 19 HOH HOH . 
F 3 HOH B 55 555 36 HOH HOH . 
F 3 HOH B 56 556 152 HOH HOH . 
F 3 HOH B 57 557 115 HOH HOH . 
F 3 HOH B 58 558 73 HOH HOH . 
F 3 HOH B 59 559 85 HOH HOH . 
F 3 HOH B 60 560 106 HOH HOH . 
F 3 HOH B 61 561 132 HOH HOH . 
F 3 HOH B 62 562 14 HOH HOH . 
F 3 HOH B 63 563 75 HOH HOH . 
F 3 HOH B 64 564 33 HOH HOH . 
F 3 HOH B 65 565 8 HOH HOH . 
F 3 HOH B 66 566 102 HOH HOH . 
F 3 HOH B 67 567 116 HOH HOH . 
F 3 HOH B 68 568 130 HOH HOH . 
F 3 HOH B 69 569 89 HOH HOH . 
F 3 HOH B 70 570 161 HOH HOH . 
F 3 HOH B 71 571 145 HOH HOH . 
F 3 HOH B 72 572 79 HOH HOH . 
F 3 HOH B 73 573 53 HOH HOH . 
F 3 HOH B 74 574 128 HOH HOH . 
F 3 HOH B 75 575 125 HOH HOH . 
F 3 HOH B 76 576 23 HOH HOH . 
F 3 HOH B 77 577 74 HOH HOH . 
F 3 HOH B 78 578 45 HOH HOH . 
F 3 HOH B 79 579 109 HOH HOH . 
F 3 HOH B 80 580 120 HOH HOH . 
F 3 HOH B 81 581 62 HOH HOH . 
F 3 HOH B 82 582 63 HOH HOH . 
F 3 HOH B 83 583 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 2 44.298 17.807 31.922 1 34.2 ? N1 PLP 401 B 1 
HETATM 2 C C2 PLP . . . D 2 42.982 17.639 31.798 1 37.85 ? C2 PLP 401 B 1 
HETATM 3 C C2A PLP . . . D 2 42.189 17.231 32.999 1 36.93 ? C2A PLP 401 B 1 
HETATM 4 C C3 PLP . . . D 2 42.343 17.859 30.563 1 39.43 ? C3 PLP 401 B 1 
HETATM 5 O O3 PLP . . . D 2 40.966 17.685 30.49 1 39.35 ? O3 PLP 401 B 1 
HETATM 6 C C4 PLP . . . D 2 43.113 18.25 29.444 1 39.44 ? C4 PLP 401 B 1 
HETATM 7 C C4A PLP . . . D 2 42.442 18.469 28.154 1 48.31 ? C4A PLP 401 B 1 
HETATM 8 O O4A PLP . . . D 2 41.327 18.94 27.985 1 55.63 ? O4A PLP 401 B 1 
HETATM 9 C C5 PLP . . . D 2 44.502 18.417 29.614 1 35.14 ? C5 PLP 401 B 1 
HETATM 10 C C6 PLP . . . D 2 45.035 18.169 30.851 1 33.66 ? C6 PLP 401 B 1 
HETATM 11 C C5A PLP . . . D 2 45.416 18.864 28.503 1 30.95 ? C5A PLP 401 B 1 
HETATM 12 O O4P PLP . . . D 2 45.366 17.907 27.4 1 30.05 ? O4P PLP 401 B 1 
HETATM 13 P P PLP . . . D 2 45.906 18.249 25.927 1 25.52 ? P PLP 401 B 1 
HETATM 14 O O1P PLP . . . D 2 46.242 16.918 25.195 1 25.31 ? O1P PLP 401 B 1 
HETATM 15 O O2P PLP . . . D 2 47.113 19.16 26.176 1 21.58 ? O2P PLP 401 B 1 
HETATM 16 O O3P PLP . . . D 2 44.678 18.883 25.347 1 26.18 ? O3P PLP 401 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#