data_8X1X # _model_server_result.job_id rNEwyKNqHF_O1A0ESSGxpQ _model_server_result.datetime_utc '2025-07-13 03:32:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8X1X # _exptl.entry_id 8X1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8X1X _cell.length_a 81.732 _cell.length_b 81.732 _cell.length_c 133.689 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 199 n n C1 C2 GOL sing 200 n n C1 H11 GOL sing 201 n n C1 H12 GOL sing 202 n n O1 HO1 GOL sing 203 n n C2 O2 GOL sing 204 n n C2 C3 GOL sing 205 n n C2 H2 GOL sing 206 n n O2 HO2 GOL sing 207 n n C3 O3 GOL sing 208 n n C3 H31 GOL sing 209 n n C3 H32 GOL sing 210 n n O3 HO3 GOL sing 211 n n # _atom_sites.entry_id 8X1X _atom_sites.fract_transf_matrix[1][1] 0.012235 _atom_sites.fract_transf_matrix[1][2] 0.007064 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4OA A 1 401 398 4OA 4OA . C 2 4OA A 1 402 1 4OA 4OA . D 2 4OA A 1 403 2 4OA 4OA . E 3 GOL A 1 404 2 GOL GOL . F 3 GOL A 1 405 3 GOL GOL . G 3 GOL A 1 406 4 GOL GOL . H 4 NA A 1 407 1 NA NA . I 5 HOH A 1 501 45 HOH HOH . I 5 HOH A 2 502 190 HOH HOH . I 5 HOH A 3 503 106 HOH HOH . I 5 HOH A 4 504 192 HOH HOH . I 5 HOH A 5 505 128 HOH HOH . I 5 HOH A 6 506 165 HOH HOH . I 5 HOH A 7 507 1 HOH HOH . I 5 HOH A 8 508 43 HOH HOH . I 5 HOH A 9 509 62 HOH HOH . I 5 HOH A 10 510 48 HOH HOH . I 5 HOH A 11 511 39 HOH HOH . I 5 HOH A 12 512 166 HOH HOH . I 5 HOH A 13 513 84 HOH HOH . I 5 HOH A 14 514 93 HOH HOH . I 5 HOH A 15 515 58 HOH HOH . I 5 HOH A 16 516 44 HOH HOH . I 5 HOH A 17 517 188 HOH HOH . I 5 HOH A 18 518 69 HOH HOH . I 5 HOH A 19 519 70 HOH HOH . I 5 HOH A 20 520 191 HOH HOH . I 5 HOH A 21 521 54 HOH HOH . I 5 HOH A 22 522 162 HOH HOH . I 5 HOH A 23 523 53 HOH HOH . I 5 HOH A 24 524 65 HOH HOH . I 5 HOH A 25 525 59 HOH HOH . I 5 HOH A 26 526 68 HOH HOH . I 5 HOH A 27 527 96 HOH HOH . I 5 HOH A 28 528 195 HOH HOH . I 5 HOH A 29 529 105 HOH HOH . I 5 HOH A 30 530 80 HOH HOH . I 5 HOH A 31 531 159 HOH HOH . I 5 HOH A 32 532 127 HOH HOH . I 5 HOH A 33 533 35 HOH HOH . I 5 HOH A 34 534 41 HOH HOH . I 5 HOH A 35 535 109 HOH HOH . I 5 HOH A 36 536 107 HOH HOH . I 5 HOH A 37 537 63 HOH HOH . I 5 HOH A 38 538 32 HOH HOH . I 5 HOH A 39 539 14 HOH HOH . I 5 HOH A 40 540 60 HOH HOH . I 5 HOH A 41 541 13 HOH HOH . I 5 HOH A 42 542 124 HOH HOH . I 5 HOH A 43 543 64 HOH HOH . I 5 HOH A 44 544 145 HOH HOH . I 5 HOH A 45 545 140 HOH HOH . I 5 HOH A 46 546 92 HOH HOH . I 5 HOH A 47 547 108 HOH HOH . I 5 HOH A 48 548 16 HOH HOH . I 5 HOH A 49 549 52 HOH HOH . I 5 HOH A 50 550 85 HOH HOH . I 5 HOH A 51 551 50 HOH HOH . I 5 HOH A 52 552 33 HOH HOH . I 5 HOH A 53 553 34 HOH HOH . I 5 HOH A 54 554 183 HOH HOH . I 5 HOH A 55 555 101 HOH HOH . I 5 HOH A 56 556 194 HOH HOH . I 5 HOH A 57 557 141 HOH HOH . I 5 HOH A 58 558 51 HOH HOH . I 5 HOH A 59 559 157 HOH HOH . I 5 HOH A 60 560 76 HOH HOH . I 5 HOH A 61 561 56 HOH HOH . I 5 HOH A 62 562 144 HOH HOH . I 5 HOH A 63 563 57 HOH HOH . I 5 HOH A 64 564 55 HOH HOH . I 5 HOH A 65 565 36 HOH HOH . I 5 HOH A 66 566 91 HOH HOH . I 5 HOH A 67 567 122 HOH HOH . I 5 HOH A 68 568 82 HOH HOH . I 5 HOH A 69 569 98 HOH HOH . I 5 HOH A 70 570 49 HOH HOH . I 5 HOH A 71 571 11 HOH HOH . I 5 HOH A 72 572 99 HOH HOH . I 5 HOH A 73 573 136 HOH HOH . I 5 HOH A 74 574 193 HOH HOH . I 5 HOH A 75 575 179 HOH HOH . I 5 HOH A 76 576 111 HOH HOH . I 5 HOH A 77 577 102 HOH HOH . I 5 HOH A 78 578 77 HOH HOH . I 5 HOH A 79 579 147 HOH HOH . I 5 HOH A 80 580 15 HOH HOH . I 5 HOH A 81 581 185 HOH HOH . I 5 HOH A 82 582 83 HOH HOH . I 5 HOH A 83 583 97 HOH HOH . I 5 HOH A 84 584 148 HOH HOH . I 5 HOH A 85 585 184 HOH HOH . I 5 HOH A 86 586 158 HOH HOH . I 5 HOH A 87 587 160 HOH HOH . I 5 HOH A 88 588 146 HOH HOH . I 5 HOH A 89 589 5 HOH HOH . I 5 HOH A 90 590 155 HOH HOH . I 5 HOH A 91 591 117 HOH HOH . I 5 HOH A 92 592 163 HOH HOH . I 5 HOH A 93 593 129 HOH HOH . I 5 HOH A 94 594 182 HOH HOH . I 5 HOH A 95 595 12 HOH HOH . I 5 HOH A 96 596 161 HOH HOH . I 5 HOH A 97 597 116 HOH HOH . I 5 HOH A 98 598 134 HOH HOH . I 5 HOH A 99 599 153 HOH HOH . I 5 HOH A 100 600 31 HOH HOH . I 5 HOH A 101 601 149 HOH HOH . I 5 HOH A 102 602 186 HOH HOH . I 5 HOH A 103 603 115 HOH HOH . I 5 HOH A 104 604 180 HOH HOH . I 5 HOH A 105 605 130 HOH HOH . I 5 HOH A 106 606 167 HOH HOH . I 5 HOH A 107 607 22 HOH HOH . I 5 HOH A 108 608 133 HOH HOH . I 5 HOH A 109 609 135 HOH HOH . I 5 HOH A 110 610 21 HOH HOH . I 5 HOH A 111 611 151 HOH HOH . I 5 HOH A 112 612 168 HOH HOH . I 5 HOH A 113 613 169 HOH HOH . I 5 HOH A 114 614 6 HOH HOH . I 5 HOH A 115 615 121 HOH HOH . I 5 HOH A 116 616 170 HOH HOH . I 5 HOH A 117 617 23 HOH HOH . I 5 HOH A 118 618 113 HOH HOH . I 5 HOH A 119 619 132 HOH HOH . I 5 HOH A 120 620 112 HOH HOH . I 5 HOH A 121 621 150 HOH HOH . I 5 HOH A 122 622 120 HOH HOH . I 5 HOH A 123 623 119 HOH HOH . I 5 HOH A 124 624 171 HOH HOH . I 5 HOH A 125 625 114 HOH HOH . I 5 HOH A 126 626 172 HOH HOH . I 5 HOH A 127 627 131 HOH HOH . I 5 HOH A 128 628 30 HOH HOH . I 5 HOH A 129 629 118 HOH HOH . I 5 HOH A 130 630 28 HOH HOH . I 5 HOH A 131 631 29 HOH HOH . I 5 HOH A 132 632 173 HOH HOH . I 5 HOH A 133 633 175 HOH HOH . I 5 HOH A 134 634 174 HOH HOH . I 5 HOH A 135 635 177 HOH HOH . I 5 HOH A 136 636 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -40.628 14.426 -70.354 1 46.49 0 C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 3 -39.491 14.936 -69.663 1 47.59 0 O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 3 -41.91 14.887 -69.696 1 48.04 0 C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 3 -43.025 14.406 -70.438 1 47.13 0 O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 3 -42.055 14.48 -68.242 1 53.97 0 C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 3 -43.33 14.842 -67.708 1 50.56 0 O3 GOL 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #