data_8X2C # _model_server_result.job_id rHJ7iCMPJeGPTGiyTahHqQ _model_server_result.datetime_utc '2025-09-01 03:48:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":603}' # _entry.id 8X2C # _exptl.entry_id 8X2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.052 _cell.angle_gamma 90 _cell.entry_id 8X2C _cell.length_a 81.408 _cell.length_b 107.033 _cell.length_c 134.756 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG B 802 NAG 2 n D NAG 2 D 2 NAG B 803 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 466 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 42 A CYS 42 1_555 A SG CYS 274 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 55 A CYS 55 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 278 A CYS 278 1_555 A SG CYS 302 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 473 A CYS 473 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 4 B CYS 4 1_555 B SG CYS 466 B CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 42 B CYS 42 1_555 B SG CYS 274 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 55 B CYS 55 1_555 B SG CYS 67 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 278 B CYS 278 1_555 B SG CYS 302 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 473 B CYS 473 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 C SG CYS 4 C CYS 4 1_555 C SG CYS 466 C CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 C SG CYS 42 C CYS 42 1_555 C SG CYS 274 C CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 C SG CYS 55 C CYS 55 1_555 C SG CYS 67 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf14 C SG CYS 278 C CYS 278 1_555 C SG CYS 302 C CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 11 A ASN 11 1_555 F C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 23 A ASN 23 1_555 E C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 B ND2 ASN 11 B ASN 11 1_555 I C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B ND2 ASN 23 B ASN 23 1_555 H C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 B ND2 ASN 165 B ASN 165 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 B ND2 ASN 483 B ASN 483 1_555 J C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 C ND2 ASN 23 C ASN 23 1_555 K C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 C ND2 ASN 165 C ASN 165 1_555 L C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8X2C _atom_sites.fract_transf_matrix[1][1] 0.012284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002399 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 601 802 NAG NAG . F 3 NAG A 1 602 803 NAG NAG . G 3 NAG A 1 603 804 NAG NAG . H 3 NAG B 1 601 804 NAG NAG . I 3 NAG B 1 602 805 NAG NAG . J 3 NAG B 1 603 806 NAG NAG . K 3 NAG C 1 601 602 NAG NAG . L 3 NAG C 1 602 603 NAG NAG . M 4 HOH A 1 701 21 HOH HOH . M 4 HOH A 2 702 56 HOH HOH . M 4 HOH A 3 703 2 HOH HOH . M 4 HOH A 4 704 131 HOH HOH . M 4 HOH A 5 705 32 HOH HOH . M 4 HOH A 6 706 9 HOH HOH . M 4 HOH A 7 707 43 HOH HOH . M 4 HOH A 8 708 36 HOH HOH . M 4 HOH A 9 709 101 HOH HOH . M 4 HOH A 10 710 30 HOH HOH . M 4 HOH A 11 711 100 HOH HOH . M 4 HOH A 12 712 54 HOH HOH . M 4 HOH A 13 713 81 HOH HOH . M 4 HOH A 14 714 52 HOH HOH . M 4 HOH A 15 715 61 HOH HOH . M 4 HOH A 16 716 134 HOH HOH . M 4 HOH A 17 717 42 HOH HOH . M 4 HOH A 18 718 67 HOH HOH . M 4 HOH A 19 719 114 HOH HOH . M 4 HOH A 20 720 46 HOH HOH . M 4 HOH A 21 721 98 HOH HOH . M 4 HOH A 22 722 44 HOH HOH . M 4 HOH A 23 723 64 HOH HOH . M 4 HOH A 24 724 11 HOH HOH . M 4 HOH A 25 725 45 HOH HOH . M 4 HOH A 26 726 29 HOH HOH . M 4 HOH A 27 727 66 HOH HOH . M 4 HOH A 28 728 24 HOH HOH . M 4 HOH A 29 729 34 HOH HOH . M 4 HOH A 30 730 14 HOH HOH . M 4 HOH A 31 731 62 HOH HOH . M 4 HOH A 32 732 80 HOH HOH . M 4 HOH A 33 733 99 HOH HOH . M 4 HOH A 34 734 15 HOH HOH . M 4 HOH A 35 735 97 HOH HOH . M 4 HOH A 36 736 16 HOH HOH . M 4 HOH A 37 737 48 HOH HOH . M 4 HOH A 38 738 125 HOH HOH . M 4 HOH A 39 739 129 HOH HOH . M 4 HOH A 40 740 53 HOH HOH . M 4 HOH A 41 741 96 HOH HOH . M 4 HOH A 42 742 124 HOH HOH . N 4 HOH B 1 701 73 HOH HOH . N 4 HOH B 2 702 113 HOH HOH . N 4 HOH B 3 703 50 HOH HOH . N 4 HOH B 4 704 35 HOH HOH . N 4 HOH B 5 705 94 HOH HOH . N 4 HOH B 6 706 57 HOH HOH . N 4 HOH B 7 707 37 HOH HOH . N 4 HOH B 8 708 3 HOH HOH . N 4 HOH B 9 709 19 HOH HOH . N 4 HOH B 10 710 107 HOH HOH . N 4 HOH B 11 711 122 HOH HOH . N 4 HOH B 12 712 51 HOH HOH . N 4 HOH B 13 713 102 HOH HOH . N 4 HOH B 14 714 119 HOH HOH . N 4 HOH B 15 715 70 HOH HOH . N 4 HOH B 16 716 55 HOH HOH . N 4 HOH B 17 717 10 HOH HOH . N 4 HOH B 18 718 18 HOH HOH . N 4 HOH B 19 719 23 HOH HOH . N 4 HOH B 20 720 121 HOH HOH . N 4 HOH B 21 721 47 HOH HOH . N 4 HOH B 22 722 38 HOH HOH . N 4 HOH B 23 723 40 HOH HOH . N 4 HOH B 24 724 41 HOH HOH . N 4 HOH B 25 725 63 HOH HOH . N 4 HOH B 26 726 83 HOH HOH . N 4 HOH B 27 727 33 HOH HOH . N 4 HOH B 28 728 27 HOH HOH . N 4 HOH B 29 729 78 HOH HOH . N 4 HOH B 30 730 133 HOH HOH . N 4 HOH B 31 731 82 HOH HOH . N 4 HOH B 32 732 123 HOH HOH . N 4 HOH B 33 733 68 HOH HOH . N 4 HOH B 34 734 59 HOH HOH . N 4 HOH B 35 735 77 HOH HOH . N 4 HOH B 36 736 8 HOH HOH . N 4 HOH B 37 737 110 HOH HOH . N 4 HOH B 38 738 13 HOH HOH . N 4 HOH B 39 739 87 HOH HOH . N 4 HOH B 40 740 95 HOH HOH . N 4 HOH B 41 741 74 HOH HOH . N 4 HOH B 42 742 105 HOH HOH . N 4 HOH B 43 743 92 HOH HOH . N 4 HOH B 44 744 116 HOH HOH . N 4 HOH B 45 745 17 HOH HOH . N 4 HOH B 46 746 120 HOH HOH . N 4 HOH B 47 747 103 HOH HOH . O 4 HOH C 1 701 28 HOH HOH . O 4 HOH C 2 702 7 HOH HOH . O 4 HOH C 3 703 127 HOH HOH . O 4 HOH C 4 704 26 HOH HOH . O 4 HOH C 5 705 12 HOH HOH . O 4 HOH C 6 706 22 HOH HOH . O 4 HOH C 7 707 79 HOH HOH . O 4 HOH C 8 708 20 HOH HOH . O 4 HOH C 9 709 126 HOH HOH . O 4 HOH C 10 710 106 HOH HOH . O 4 HOH C 11 711 4 HOH HOH . O 4 HOH C 12 712 108 HOH HOH . O 4 HOH C 13 713 84 HOH HOH . O 4 HOH C 14 714 39 HOH HOH . O 4 HOH C 15 715 93 HOH HOH . O 4 HOH C 16 716 60 HOH HOH . O 4 HOH C 17 717 25 HOH HOH . O 4 HOH C 18 718 91 HOH HOH . O 4 HOH C 19 719 90 HOH HOH . O 4 HOH C 20 720 75 HOH HOH . O 4 HOH C 21 721 72 HOH HOH . O 4 HOH C 22 722 31 HOH HOH . O 4 HOH C 23 723 112 HOH HOH . O 4 HOH C 24 724 71 HOH HOH . O 4 HOH C 25 725 117 HOH HOH . O 4 HOH C 26 726 135 HOH HOH . O 4 HOH C 27 727 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 3 13.198 -2.798 -96.623 1 98.8 ? C1 NAG 603 B 1 HETATM 2 C C2 NAG . . . J 3 13.301 -2.28 -98.058 1 93.7 ? C2 NAG 603 B 1 HETATM 3 C C3 NAG . . . J 3 14.686 -2.004 -98.511 1 97.38 ? C3 NAG 603 B 1 HETATM 4 C C4 NAG . . . J 3 15.441 -1.158 -97.539 1 98.79 ? C4 NAG 603 B 1 HETATM 5 C C5 NAG . . . J 3 15.46 -1.819 -96.164 1 112.25 ? C5 NAG 603 B 1 HETATM 6 C C6 NAG . . . J 3 16.183 -0.919 -95.208 1 100.95 ? C6 NAG 603 B 1 HETATM 7 C C7 NAG . . . J 3 11.325 -3.303 -99.358 1 98.12 ? C7 NAG 603 B 1 HETATM 8 C C8 NAG . . . J 3 10.806 -4.346 -100.351 1 94.19 ? C8 NAG 603 B 1 HETATM 9 N N2 NAG . . . J 3 12.745 -3.289 -99.015 1 97.35 ? N2 NAG 603 B 1 HETATM 10 O O3 NAG . . . J 3 14.624 -1.316 -99.791 1 93.37 ? O3 NAG 603 B 1 HETATM 11 O O4 NAG . . . J 3 16.782 -1.002 -98.007 1 88.36 ? O4 NAG 603 B 1 HETATM 12 O O5 NAG . . . J 3 14.097 -2.062 -95.661 1 118.7 ? O5 NAG 603 B 1 HETATM 13 O O6 NAG . . . J 3 15.956 -1.354 -93.893 1 100.64 ? O6 NAG 603 B 1 HETATM 14 O O7 NAG . . . J 3 10.58 -2.519 -98.872 1 110.04 ? O7 NAG 603 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #