data_8X35
#
_model_server_result.job_id            oCoSYPMVEdTAo22sp13gwQ 
_model_server_result.datetime_utc      '2024-12-22 01:35:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8x35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":403}' 
#
_entry.id    8X35 
#
_exptl.entry_id    8X35 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              173.943 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DIPHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.067 
_cell.angle_gamma         90 
_cell.entry_id            8X35 
_cell.length_a            98.31 
_cell.length_b            49.23 
_cell.length_c            121.39 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8X35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 56 A CYS 54 1_555 B SG CYS 170 B CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 66 A CYS 64 1_555 A SG CYS 243 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 170 A CYS 168 1_555 B SG CYS 56 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 66 B CYS 64 1_555 B SG CYS 243 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A OD1 ASP 88 A ASP 86 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc2 C MG MG . A MG 401 1_555 D O2A IPE . A IPE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc3 C MG MG . A MG 401 1_555 E O8 DST . A DST 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc4 C MG MG . A MG 401 1_555 E O5 DST . A DST 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc5 B OD1 ASP 88 B ASP 86 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc6 H MG MG . B MG 401 1_555 I O5 DPO . B DPO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc7 H MG MG . B MG 401 1_555 J O1 DPO . B DPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc8 H MG MG . B MG 401 1_555 J O7 DPO . B DPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
#
_chem_comp.formula           'O7 P2 -4' 
_chem_comp.formula_weight    173.943 
_chem_comp.id                DPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DIPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 DPO doub 83 n n 
P1 O2 DPO sing 84 n n 
P1 O3 DPO sing 85 n n 
P1 O4 DPO sing 86 n n 
O4 P2 DPO sing 87 n n 
P2 O5 DPO doub 88 n n 
P2 O6 DPO sing 89 n n 
P2 O7 DPO sing 90 n n 
#
_atom_sites.entry_id                     8X35 
_atom_sites.fract_transf_matrix[1][1]    0.010172 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000189 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020313 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008239 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 401 401 MG MG . 
D 3 IPE A 1 402 501 IPE IPE . 
E 4 DST A 1 403 601 DST DST . 
F 5 PEG A 1 404 602 PEG PEG . 
G 6 EDO A 1 405 602 EDO EDO . 
H 2 MG B 1 401 401 MG MG . 
I 7 DPO B 1 402 501 DPO POP . 
J 7 DPO B 1 403 601 DPO POP . 
K 8 HOH A 1 501 7 HOH HOH . 
K 8 HOH A 2 502 8 HOH HOH . 
K 8 HOH A 3 503 17 HOH HOH . 
K 8 HOH A 4 504 68 HOH HOH . 
K 8 HOH A 5 505 25 HOH HOH . 
K 8 HOH A 6 506 3 HOH HOH . 
K 8 HOH A 7 507 81 HOH HOH . 
K 8 HOH A 8 508 44 HOH HOH . 
K 8 HOH A 9 509 1 HOH HOH . 
K 8 HOH A 10 510 13 HOH HOH . 
K 8 HOH A 11 511 95 HOH HOH . 
K 8 HOH A 12 512 97 HOH HOH . 
K 8 HOH A 13 513 5 HOH HOH . 
K 8 HOH A 14 514 48 HOH HOH . 
K 8 HOH A 15 515 15 HOH HOH . 
K 8 HOH A 16 516 19 HOH HOH . 
K 8 HOH A 17 517 50 HOH HOH . 
K 8 HOH A 18 518 90 HOH HOH . 
K 8 HOH A 19 519 113 HOH HOH . 
K 8 HOH A 20 520 23 HOH HOH . 
K 8 HOH A 21 521 45 HOH HOH . 
K 8 HOH A 22 522 2 HOH HOH . 
K 8 HOH A 23 523 94 HOH HOH . 
K 8 HOH A 24 524 70 HOH HOH . 
K 8 HOH A 25 525 62 HOH HOH . 
K 8 HOH A 26 526 88 HOH HOH . 
K 8 HOH A 27 527 61 HOH HOH . 
K 8 HOH A 28 528 80 HOH HOH . 
K 8 HOH A 29 529 112 HOH HOH . 
K 8 HOH A 30 530 4 HOH HOH . 
K 8 HOH A 31 531 41 HOH HOH . 
K 8 HOH A 32 532 16 HOH HOH . 
K 8 HOH A 33 533 47 HOH HOH . 
K 8 HOH A 34 534 111 HOH HOH . 
K 8 HOH A 35 535 114 HOH HOH . 
K 8 HOH A 36 536 20 HOH HOH . 
K 8 HOH A 37 537 91 HOH HOH . 
K 8 HOH A 38 538 21 HOH HOH . 
K 8 HOH A 39 539 14 HOH HOH . 
K 8 HOH A 40 540 129 HOH HOH . 
K 8 HOH A 41 541 87 HOH HOH . 
K 8 HOH A 42 542 64 HOH HOH . 
K 8 HOH A 43 543 12 HOH HOH . 
K 8 HOH A 44 544 52 HOH HOH . 
K 8 HOH A 45 545 124 HOH HOH . 
K 8 HOH A 46 546 22 HOH HOH . 
K 8 HOH A 47 547 104 HOH HOH . 
K 8 HOH A 48 548 100 HOH HOH . 
K 8 HOH A 49 549 75 HOH HOH . 
K 8 HOH A 50 550 11 HOH HOH . 
K 8 HOH A 51 551 67 HOH HOH . 
K 8 HOH A 52 552 49 HOH HOH . 
K 8 HOH A 53 553 134 HOH HOH . 
K 8 HOH A 54 554 92 HOH HOH . 
K 8 HOH A 55 555 131 HOH HOH . 
K 8 HOH A 56 556 116 HOH HOH . 
K 8 HOH A 57 557 130 HOH HOH . 
K 8 HOH A 58 558 132 HOH HOH . 
L 8 HOH B 1 501 30 HOH HOH . 
L 8 HOH B 2 502 39 HOH HOH . 
L 8 HOH B 3 503 119 HOH HOH . 
L 8 HOH B 4 504 40 HOH HOH . 
L 8 HOH B 5 505 101 HOH HOH . 
L 8 HOH B 6 506 27 HOH HOH . 
L 8 HOH B 7 507 6 HOH HOH . 
L 8 HOH B 8 508 31 HOH HOH . 
L 8 HOH B 9 509 118 HOH HOH . 
L 8 HOH B 10 510 42 HOH HOH . 
L 8 HOH B 11 511 18 HOH HOH . 
L 8 HOH B 12 512 53 HOH HOH . 
L 8 HOH B 13 513 26 HOH HOH . 
L 8 HOH B 14 514 82 HOH HOH . 
L 8 HOH B 15 515 28 HOH HOH . 
L 8 HOH B 16 516 103 HOH HOH . 
L 8 HOH B 17 517 110 HOH HOH . 
L 8 HOH B 18 518 29 HOH HOH . 
L 8 HOH B 19 519 59 HOH HOH . 
L 8 HOH B 20 520 58 HOH HOH . 
L 8 HOH B 21 521 69 HOH HOH . 
L 8 HOH B 22 522 89 HOH HOH . 
L 8 HOH B 23 523 24 HOH HOH . 
L 8 HOH B 24 524 65 HOH HOH . 
L 8 HOH B 25 525 63 HOH HOH . 
L 8 HOH B 26 526 36 HOH HOH . 
L 8 HOH B 27 527 66 HOH HOH . 
L 8 HOH B 28 528 93 HOH HOH . 
L 8 HOH B 29 529 127 HOH HOH . 
L 8 HOH B 30 530 106 HOH HOH . 
L 8 HOH B 31 531 71 HOH HOH . 
L 8 HOH B 32 532 117 HOH HOH . 
L 8 HOH B 33 533 60 HOH HOH . 
L 8 HOH B 34 534 37 HOH HOH . 
L 8 HOH B 35 535 76 HOH HOH . 
L 8 HOH B 36 536 54 HOH HOH . 
L 8 HOH B 37 537 115 HOH HOH . 
L 8 HOH B 38 538 72 HOH HOH . 
L 8 HOH B 39 539 96 HOH HOH . 
L 8 HOH B 40 540 133 HOH HOH . 
L 8 HOH B 41 541 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 DPO . . . J 7 22.407 -15.463 42.161 1 60.77 0 P1 DPO 403 B 1 
HETATM 2 O O1 DPO . . . J 7 22.274 -14.517 40.992 1 62.33 0 O1 DPO 403 B 1 
HETATM 3 O O2 DPO . . . J 7 23.877 -15.442 42.538 1 59.6 0 O2 DPO 403 B 1 
HETATM 4 O O3 DPO . . . J 7 21.889 -16.81 41.717 1 59.84 0 O3 DPO 403 B 1 
HETATM 5 O O4 DPO . . . J 7 21.561 -15.004 43.47 1 62.91 0 O4 DPO 403 B 1 
HETATM 6 P P2 DPO . . . J 7 20.09 -14.34 43.425 1 62.21 0 P2 DPO 403 B 1 
HETATM 7 O O5 DPO . . . J 7 20.175 -12.966 44.059 1 58.52 0 O5 DPO 403 B 1 
HETATM 8 O O6 DPO . . . J 7 19.102 -15.209 44.177 1 66.08 0 O6 DPO 403 B 1 
HETATM 9 O O7 DPO . . . J 7 19.633 -14.217 41.987 1 65.01 0 O7 DPO 403 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           9 
#