data_8X3L
#
_model_server_result.job_id            dO7MgQAhEPVGnQDmud_jQg 
_model_server_result.datetime_utc      '2024-11-21 09:51:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8x3l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8X3L 
#
_exptl.entry_id    8X3L 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              409.389 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[3-(4-fluoranyl-2~{H}-indazol-7-yl)-1,2,4-oxadiazol-5-yl]-1-(4-fluorophenyl)azepan-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8X3L 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8X3L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 174 R CYS 174 1_555 D SG CYS 179 R CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           ? 
_chem_comp.formula_weight    409.389 
_chem_comp.id                XWD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[3-(4-fluoranyl-2~{H}-indazol-7-yl)-1,2,4-oxadiazol-5-yl]-1-(4-fluorophenyl)azepan-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 XWD sing 374 n y 
C01 C06 XWD doub 375 n y 
C02 C03 XWD doub 376 n y 
C03 C04 XWD sing 377 n y 
C03 F16 XWD sing 378 n n 
C04 C05 XWD sing 379 n y 
C04 C07 XWD doub 380 n y 
C05 C06 XWD sing 381 n y 
C05 N09 XWD doub 382 n y 
C06 C10 XWD sing 383 n n 
C07 N08 XWD sing 384 n y 
N08 N09 XWD sing 385 n y 
C10 N11 XWD doub 386 n y 
C10 N14 XWD sing 387 n y 
N11 O12 XWD sing 388 n y 
O12 C13 XWD sing 389 n y 
C13 N14 XWD doub 390 n y 
C13 C15 XWD sing 391 n n 
C15 C22 XWD sing 392 n n 
C18 C19 XWD sing 393 n n 
C19 N20 XWD sing 394 n n 
N20 C21 XWD sing 395 n n 
N20 C24 XWD sing 396 n n 
C21 C22 XWD sing 397 n n 
C21 O23 XWD doub 398 n n 
C24 C25 XWD doub 399 n y 
C24 C29 XWD sing 400 n y 
C25 C26 XWD sing 401 n y 
C26 C27 XWD doub 402 n y 
C27 C28 XWD sing 403 n y 
C27 F30 XWD sing 404 n n 
C28 C29 XWD doub 405 n y 
C18 C17 XWD sing 406 n n 
C01 H1 XWD sing 407 n n 
C02 H2 XWD sing 408 n n 
C07 H3 XWD sing 409 n n 
N08 H4 XWD sing 410 n n 
C15 H5 XWD sing 411 n n 
C17 H7 XWD sing 412 n n 
C17 H8 XWD sing 413 n n 
C18 H10 XWD sing 414 n n 
C18 H11 XWD sing 415 n n 
C19 H12 XWD sing 416 n n 
C19 H13 XWD sing 417 n n 
C22 H14 XWD sing 418 n n 
C22 H15 XWD sing 419 n n 
C25 H16 XWD sing 420 n n 
C26 H17 XWD sing 421 n n 
C28 H18 XWD sing 422 n n 
C29 H19 XWD sing 423 n n 
C15 C17 XWD sing 424 n n 
#
_atom_sites.entry_id                     8X3L 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           XWD 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       XWD 
_pdbx_nonpoly_scheme.auth_mon_id      183 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 XWD . . . F 6 103.526 100.187 147.254 1 126.7 ? C01 XWD 401 R 1 
HETATM 2 C C02 XWD . . . F 6 102.691 99.284 147.934 1 126.7 ? C02 XWD 401 R 1 
HETATM 3 C C03 XWD . . . F 6 101.704 98.559 147.223 1 126.7 ? C03 XWD 401 R 1 
HETATM 4 C C04 XWD . . . F 6 101.558 98.743 145.84 1 126.7 ? C04 XWD 401 R 1 
HETATM 5 C C05 XWD . . . F 6 102.383 99.637 145.165 1 126.7 ? C05 XWD 401 R 1 
HETATM 6 C C06 XWD . . . F 6 103.384 100.372 145.888 1 126.7 ? C06 XWD 401 R 1 
HETATM 7 C C07 XWD . . . F 6 100.676 98.183 144.817 1 126.7 ? C07 XWD 401 R 1 
HETATM 8 N N08 XWD . . . F 6 101.004 98.737 143.677 1 126.7 ? N08 XWD 401 R 1 
HETATM 9 N N09 XWD . . . F 6 102.012 99.6 143.861 1 126.7 ? N09 XWD 401 R 1 
HETATM 10 C C10 XWD . . . F 6 104.307 101.371 145.144 1 126.7 ? C10 XWD 401 R 1 
HETATM 11 N N11 XWD . . . F 6 104.966 102.398 145.689 1 126.7 ? N11 XWD 401 R 1 
HETATM 12 O O12 XWD . . . F 6 105.647 103.017 144.73 1 126.7 ? O12 XWD 401 R 1 
HETATM 13 C C13 XWD . . . F 6 105.435 102.408 143.593 1 126.7 ? C13 XWD 401 R 1 
HETATM 14 N N14 XWD . . . F 6 104.6 101.368 143.796 1 126.7 ? N14 XWD 401 R 1 
HETATM 15 C C15 XWD . . . F 6 105.97 102.768 142.4 1 126.7 ? C15 XWD 401 R 1 
HETATM 16 C C17 XWD . . . F 6 105.211 101.557 140.935 1 126.7 ? C17 XWD 401 R 1 
HETATM 17 C C18 XWD . . . F 6 106.568 100.786 139.922 1 126.7 ? C18 XWD 401 R 1 
HETATM 18 C C19 XWD . . . F 6 107.914 101.118 140.457 1 126.7 ? C19 XWD 401 R 1 
HETATM 19 N N20 XWD . . . F 6 108.016 100.878 141.529 1 126.7 ? N20 XWD 401 R 1 
HETATM 20 C C21 XWD . . . F 6 107.777 101.58 142.547 1 126.7 ? C21 XWD 401 R 1 
HETATM 21 C C22 XWD . . . F 6 107.377 102.693 142.482 1 126.7 ? C22 XWD 401 R 1 
HETATM 22 O O23 XWD . . . F 6 107.939 101.169 143.651 1 126.7 ? O23 XWD 401 R 1 
HETATM 23 C C24 XWD . . . F 6 108.515 99.488 141.72 1 126.7 ? C24 XWD 401 R 1 
HETATM 24 C C25 XWD . . . F 6 109.855 99.264 142.099 1 126.7 ? C25 XWD 401 R 1 
HETATM 25 C C26 XWD . . . F 6 110.317 97.962 142.276 1 126.7 ? C26 XWD 401 R 1 
HETATM 26 C C27 XWD . . . F 6 109.452 96.876 142.078 1 126.7 ? C27 XWD 401 R 1 
HETATM 27 C C28 XWD . . . F 6 108.124 97.099 141.703 1 126.7 ? C28 XWD 401 R 1 
HETATM 28 C C29 XWD . . . F 6 107.656 98.41 141.524 1 126.7 ? C29 XWD 401 R 1 
HETATM 29 F F16 XWD . . . F 6 100.892 97.677 147.888 1 126.7 ? F16 XWD 401 R 1 
HETATM 30 F F30 XWD . . . F 6 109.906 95.6 142.252 1 126.7 ? F30 XWD 401 R 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           30 
#