data_8X3V # _model_server_result.job_id uhawgDIgPAzyeWkqHuWDBQ _model_server_result.datetime_utc '2024-10-18 05:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8X3V # _exptl.entry_id 8X3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8X3V _cell.length_a 171 _cell.length_b 171 _cell.length_c 77.01 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 -12.835 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8X3V _atom_sites.fract_transf_matrix[1][1] 0.005848 _atom_sites.fract_transf_matrix[1][2] 0.003376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ATP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id ATP _pdbx_nonpoly_scheme.auth_mon_id ATP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 -44.849 53.321 -9.383 1 152.03 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . C 2 -43.881 53.376 -10.528 0.5 125.82 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . C 2 -45.571 54.609 -9.125 0.5 159.19 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . C 2 -44.264 52.713 -8.135 0.5 119.42 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . C 2 -45.955 50.759 -9.856 1 125.96 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . C 2 -45.779 50.259 -8.444 0.8 156.78 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . C 2 -47.103 50.207 -10.643 0.7 83.69 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . C 2 -46.054 52.362 -9.857 0.7 117.29 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . C 2 -44.615 50.602 -12.323 1 169.02 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . C 2 -45.738 51.483 -12.809 0.7 109.84 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . C 2 -44.473 49.203 -12.868 0.7 148.23 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . C 2 -44.618 50.505 -10.713 0.7 137.58 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . C 2 -43.235 51.364 -12.621 0.9 159.26 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . C 2 -42.254 50.756 -13.455 0.8 156.9 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . C 2 -40.856 51.005 -12.901 0.8 148.22 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . C 2 -40.273 52.173 -13.482 0.8 132.45 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . C 2 -40.883 51.193 -11.396 0.6 163.81 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . C 2 -40.176 50.121 -10.766 0.7 154.86 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . C 2 -40.189 52.509 -11.127 0.7 155.07 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . C 2 -38.97 52.253 -10.429 0.7 129.79 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . C 2 -39.88 53.119 -12.484 0.7 143.53 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . C 2 -40.657 54.362 -12.702 1 125.36 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . C 2 -41.51 54.956 -11.851 1 116.74 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . C 2 -42.05 56.076 -12.391 1 105.09 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . C 2 -41.525 56.21 -13.619 0.8 100.79 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . C 2 -41.648 57.163 -14.738 1 97.67 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . C 2 -42.458 58.233 -14.654 1 98.99 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . C 2 -40.925 56.935 -15.849 1 98.82 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . C 2 -40.104 55.882 -15.961 1 107.04 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . C 2 -39.941 54.975 -14.987 1 114.16 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . C 2 -40.608 55.084 -13.815 0.8 115.56 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #