data_8X5K # _model_server_result.job_id RiUHZBzeDBPzaRwlbckaPg _model_server_result.datetime_utc '2024-11-25 04:34:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8X5K # _exptl.entry_id 8X5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(1R,2S)-2-aminocyclohexyl]amino}-4-{[3-(2H-1,2,3-triazol-2-yl)phenyl]amino}pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.519 _cell.angle_gamma 90 _cell.entry_id 8X5K _cell.length_a 38.095 _cell.length_b 83.903 _cell.length_c 39.962 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N9 O' _chem_comp.formula_weight 393.446 _chem_comp.id 3YT _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[(1R,2S)-2-aminocyclohexyl]amino}-4-{[3-(2H-1,2,3-triazol-2-yl)phenyl]amino}pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 3YT sing 1 n n C5 C4 3YT sing 2 n n C6 C7 3YT sing 3 n n C27 N28 3YT doub 4 n y C27 C26 3YT sing 5 n y C4 C3 3YT sing 6 n n N28 N24 3YT sing 7 n y C26 N25 3YT doub 8 n y C7 N8 3YT sing 9 n n C7 C2 3YT sing 10 n n N24 N25 3YT sing 11 n y N24 C22 3YT sing 12 n n N8 C9 3YT sing 13 n n C3 C2 3YT sing 14 n n C2 N1 3YT sing 15 n n C9 N29 3YT doub 16 n y C9 N10 3YT sing 17 n y C22 C23 3YT doub 18 n y C22 C21 3YT sing 19 n y C23 C18 3YT sing 20 n y N29 C16 3YT sing 21 n y N10 C11 3YT doub 22 n y C21 C20 3YT doub 23 n y C16 N17 3YT sing 24 n n C16 C12 3YT doub 25 n y C18 N17 3YT sing 26 n n C18 C19 3YT doub 27 n y C11 C12 3YT sing 28 n y C12 C13 3YT sing 29 n n C20 C19 3YT sing 30 n y C13 N14 3YT sing 31 n n C13 O15 3YT doub 32 n n C2 H1 3YT sing 33 n n C3 H2 3YT sing 34 n n C3 H3 3YT sing 35 n n C11 H4 3YT sing 36 n n C19 H5 3YT sing 37 n n C20 H6 3YT sing 38 n n C21 H7 3YT sing 39 n n C23 H8 3YT sing 40 n n C26 H9 3YT sing 41 n n C27 H10 3YT sing 42 n n N1 H11 3YT sing 43 n n N1 H12 3YT sing 44 n n C4 H14 3YT sing 45 n n C4 H15 3YT sing 46 n n C5 H16 3YT sing 47 n n C5 H17 3YT sing 48 n n C6 H18 3YT sing 49 n n C6 H19 3YT sing 50 n n C7 H20 3YT sing 51 n n N8 H21 3YT sing 52 n n N14 H22 3YT sing 53 n n N14 H23 3YT sing 54 n n N17 H24 3YT sing 55 n n # _atom_sites.entry_id 8X5K _atom_sites.fract_transf_matrix[1][1] 0.02625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00535 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3YT A 1 701 1 3YT 607 . C 3 EDO A 1 702 1 EDO EDO . D 4 HOH A 1 801 74 HOH HOH . D 4 HOH A 2 802 66 HOH HOH . D 4 HOH A 3 803 76 HOH HOH . D 4 HOH A 4 804 102 HOH HOH . D 4 HOH A 5 805 109 HOH HOH . D 4 HOH A 6 806 32 HOH HOH . D 4 HOH A 7 807 39 HOH HOH . D 4 HOH A 8 808 3 HOH HOH . D 4 HOH A 9 809 27 HOH HOH . D 4 HOH A 10 810 110 HOH HOH . D 4 HOH A 11 811 28 HOH HOH . D 4 HOH A 12 812 19 HOH HOH . D 4 HOH A 13 813 15 HOH HOH . D 4 HOH A 14 814 121 HOH HOH . D 4 HOH A 15 815 111 HOH HOH . D 4 HOH A 16 816 88 HOH HOH . D 4 HOH A 17 817 14 HOH HOH . D 4 HOH A 18 818 106 HOH HOH . D 4 HOH A 19 819 35 HOH HOH . D 4 HOH A 20 820 91 HOH HOH . D 4 HOH A 21 821 18 HOH HOH . D 4 HOH A 22 822 56 HOH HOH . D 4 HOH A 23 823 36 HOH HOH . D 4 HOH A 24 824 100 HOH HOH . D 4 HOH A 25 825 11 HOH HOH . D 4 HOH A 26 826 61 HOH HOH . D 4 HOH A 27 827 37 HOH HOH . D 4 HOH A 28 828 23 HOH HOH . D 4 HOH A 29 829 24 HOH HOH . D 4 HOH A 30 830 8 HOH HOH . D 4 HOH A 31 831 20 HOH HOH . D 4 HOH A 32 832 33 HOH HOH . D 4 HOH A 33 833 77 HOH HOH . D 4 HOH A 34 834 6 HOH HOH . D 4 HOH A 35 835 80 HOH HOH . D 4 HOH A 36 836 58 HOH HOH . D 4 HOH A 37 837 70 HOH HOH . D 4 HOH A 38 838 94 HOH HOH . D 4 HOH A 39 839 119 HOH HOH . D 4 HOH A 40 840 49 HOH HOH . D 4 HOH A 41 841 89 HOH HOH . D 4 HOH A 42 842 55 HOH HOH . D 4 HOH A 43 843 126 HOH HOH . D 4 HOH A 44 844 122 HOH HOH . D 4 HOH A 45 845 42 HOH HOH . D 4 HOH A 46 846 38 HOH HOH . D 4 HOH A 47 847 85 HOH HOH . D 4 HOH A 48 848 124 HOH HOH . D 4 HOH A 49 849 92 HOH HOH . D 4 HOH A 50 850 101 HOH HOH . D 4 HOH A 51 851 67 HOH HOH . D 4 HOH A 52 852 107 HOH HOH . D 4 HOH A 53 853 9 HOH HOH . D 4 HOH A 54 854 40 HOH HOH . D 4 HOH A 55 855 1 HOH HOH . D 4 HOH A 56 856 75 HOH HOH . D 4 HOH A 57 857 104 HOH HOH . D 4 HOH A 58 858 64 HOH HOH . D 4 HOH A 59 859 7 HOH HOH . D 4 HOH A 60 860 16 HOH HOH . D 4 HOH A 61 861 52 HOH HOH . D 4 HOH A 62 862 112 HOH HOH . D 4 HOH A 63 863 115 HOH HOH . D 4 HOH A 64 864 22 HOH HOH . D 4 HOH A 65 865 59 HOH HOH . D 4 HOH A 66 866 10 HOH HOH . D 4 HOH A 67 867 60 HOH HOH . D 4 HOH A 68 868 29 HOH HOH . D 4 HOH A 69 869 12 HOH HOH . D 4 HOH A 70 870 41 HOH HOH . D 4 HOH A 71 871 63 HOH HOH . D 4 HOH A 72 872 47 HOH HOH . D 4 HOH A 73 873 50 HOH HOH . D 4 HOH A 74 874 13 HOH HOH . D 4 HOH A 75 875 5 HOH HOH . D 4 HOH A 76 876 48 HOH HOH . D 4 HOH A 77 877 95 HOH HOH . D 4 HOH A 78 878 31 HOH HOH . D 4 HOH A 79 879 45 HOH HOH . D 4 HOH A 80 880 25 HOH HOH . D 4 HOH A 81 881 127 HOH HOH . D 4 HOH A 82 882 114 HOH HOH . D 4 HOH A 83 883 90 HOH HOH . D 4 HOH A 84 884 120 HOH HOH . D 4 HOH A 85 885 43 HOH HOH . D 4 HOH A 86 886 69 HOH HOH . D 4 HOH A 87 887 2 HOH HOH . D 4 HOH A 88 888 118 HOH HOH . D 4 HOH A 89 889 26 HOH HOH . D 4 HOH A 90 890 83 HOH HOH . D 4 HOH A 91 891 4 HOH HOH . D 4 HOH A 92 892 54 HOH HOH . D 4 HOH A 93 893 53 HOH HOH . D 4 HOH A 94 894 17 HOH HOH . D 4 HOH A 95 895 96 HOH HOH . D 4 HOH A 96 896 44 HOH HOH . D 4 HOH A 97 897 86 HOH HOH . D 4 HOH A 98 898 62 HOH HOH . D 4 HOH A 99 899 123 HOH HOH . D 4 HOH A 100 900 117 HOH HOH . D 4 HOH A 101 901 65 HOH HOH . D 4 HOH A 102 902 30 HOH HOH . D 4 HOH A 103 903 51 HOH HOH . D 4 HOH A 104 904 108 HOH HOH . D 4 HOH A 105 905 34 HOH HOH . D 4 HOH A 106 906 87 HOH HOH . D 4 HOH A 107 907 116 HOH HOH . D 4 HOH A 108 908 113 HOH HOH . D 4 HOH A 109 909 21 HOH HOH . D 4 HOH A 110 910 72 HOH HOH . D 4 HOH A 111 911 82 HOH HOH . D 4 HOH A 112 912 81 HOH HOH . D 4 HOH A 113 913 68 HOH HOH . D 4 HOH A 114 914 105 HOH HOH . D 4 HOH A 115 915 73 HOH HOH . D 4 HOH A 116 916 125 HOH HOH . D 4 HOH A 117 917 98 HOH HOH . D 4 HOH A 118 918 93 HOH HOH . D 4 HOH A 119 919 57 HOH HOH . D 4 HOH A 120 920 46 HOH HOH . D 4 HOH A 121 921 103 HOH HOH . D 4 HOH A 122 922 71 HOH HOH . D 4 HOH A 123 923 79 HOH HOH . D 4 HOH A 124 924 97 HOH HOH . D 4 HOH A 125 925 78 HOH HOH . D 4 HOH A 126 926 99 HOH HOH . D 4 HOH A 127 927 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 3YT . . . B 2 6.278 6.366 16.812 1 28.33 0 C2 3YT 701 A 1 HETATM 2 C C3 3YT . . . B 2 5.523 6.268 18.137 1 28.75 0 C3 3YT 701 A 1 HETATM 3 C C11 3YT . . . B 2 8.449 4.097 12.424 1 22.53 0 C11 3YT 701 A 1 HETATM 4 C C12 3YT . . . B 2 8.727 2.955 13.156 1 22.05 0 C12 3YT 701 A 1 HETATM 5 C C13 3YT . . . B 2 9.709 1.946 12.64 1 20.33 0 C13 3YT 701 A 1 HETATM 6 C C16 3YT . . . B 2 8.05 2.823 14.418 1 23.03 0 C16 3YT 701 A 1 HETATM 7 C C18 3YT . . . B 2 7.912 1.423 16.509 1 23.74 0 C18 3YT 701 A 1 HETATM 8 C C19 3YT . . . B 2 8.612 0.42 17.164 1 24.87 0 C19 3YT 701 A 1 HETATM 9 C C20 3YT . . . B 2 8.265 0.08 18.458 1 25.43 0 C20 3YT 701 A 1 HETATM 10 C C21 3YT . . . B 2 7.213 0.711 19.097 1 26.04 0 C21 3YT 701 A 1 HETATM 11 C C22 3YT . . . B 2 6.508 1.691 18.43 1 27.25 0 C22 3YT 701 A 1 HETATM 12 C C23 3YT . . . B 2 6.842 2.047 17.138 1 24.7 0 C23 3YT 701 A 1 HETATM 13 C C26 3YT . . . B 2 3.637 3.434 19.351 1 35.01 0 C26 3YT 701 A 1 HETATM 14 C C27 3YT . . . B 2 4.128 3.055 20.576 1 33.84 0 C27 3YT 701 A 1 HETATM 15 N N1 3YT . . . B 2 6.619 7.791 16.513 1 28.54 0 N1 3YT 701 A 1 HETATM 16 C C4 3YT . . . B 2 4.187 6.992 18.066 1 28.94 0 C4 3YT 701 A 1 HETATM 17 C C5 3YT . . . B 2 3.318 6.442 16.957 1 28.14 0 C5 3YT 701 A 1 HETATM 18 C C6 3YT . . . B 2 4.049 6.427 15.612 1 28.43 0 C6 3YT 701 A 1 HETATM 19 C C7 3YT . . . B 2 5.41 5.743 15.713 1 27.04 0 C7 3YT 701 A 1 HETATM 20 N N8 3YT . . . B 2 6.109 5.764 14.438 1 25.23 0 N8 3YT 701 A 1 HETATM 21 C C9 3YT . . . B 2 6.975 4.812 14.028 1 24.89 0 C9 3YT 701 A 1 HETATM 22 N N10 3YT . . . B 2 7.589 5.027 12.842 1 24.29 0 N10 3YT 701 A 1 HETATM 23 N N14 3YT . . . B 2 10.133 1.02 13.483 1 17.92 0 N14 3YT 701 A 1 HETATM 24 O O15 3YT . . . B 2 10.059 1.957 11.445 1 24.39 0 O15 3YT 701 A 1 HETATM 25 N N17 3YT . . . B 2 8.279 1.736 15.195 1 23.11 0 N17 3YT 701 A 1 HETATM 26 N N24 3YT . . . B 2 5.414 2.336 19.071 1 31.63 0 N24 3YT 701 A 1 HETATM 27 N N25 3YT . . . B 2 4.449 2.968 18.402 1 34.27 0 N25 3YT 701 A 1 HETATM 28 N N28 3YT . . . B 2 5.245 2.352 20.397 1 35.26 0 N28 3YT 701 A 1 HETATM 29 N N29 3YT . . . B 2 7.186 3.743 14.825 1 23.34 0 N29 3YT 701 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #