data_8X5L # _model_server_result.job_id 5aLk52hcqOUCe0BxdupJNg _model_server_result.datetime_utc '2024-11-21 23:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8X5L # _exptl.entry_id 8X5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.789 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-(4-chlorophenyl)-2-hydroxy-2-[4-(1H-pyrazol-4-yl)phenyl]ethanaminium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8X5L _cell.length_a 77.272 _cell.length_b 77.272 _cell.length_c 142.698 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 201 A CYS 200 1_555 B SG CYS 201 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A C VAL 339 A VAL 338 1_555 A N SEP 340 A SEP 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C SEP 340 A SEP 339 1_555 A N ILE 341 A ILE 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 A O LYS 347 A LYS 346 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc2 A OG SER 350 A SER 349 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 D NA NA . A NA 402 4_655 B O SER 261 B SER 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? # _chem_comp.formula 'C17 H17 Cl N3 O 1' _chem_comp.formula_weight 314.789 _chem_comp.id RKD _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-(4-chlorophenyl)-2-hydroxy-2-[4-(1H-pyrazol-4-yl)phenyl]ethanaminium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1S)-2-AMINO-1-(4-CHLOROPHENYL)-1-(4-(1H-PYRAZOL-4-YL)PHENYL)ETHAN-1-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 RKD sing 277 n n N1 HN1 RKD sing 278 n n N1 HN1A RKD sing 279 n n N1 HN1B RKD sing 280 n n C2 C60 RKD sing 281 n n C2 H2 RKD sing 282 n n C2 H2A RKD sing 283 n n C4 C5 RKD doub 284 n y C4 C10 RKD sing 285 n y C4 C60 RKD sing 286 n n C5 C6 RKD sing 287 n y C5 H5 RKD sing 288 n n C6 C7 RKD doub 289 n y C6 H6 RKD sing 290 n n C7 CL8 RKD sing 291 n n C7 C9 RKD sing 292 n y O7 C60 RKD sing 293 n n O7 HO7 RKD sing 294 n n C9 C10 RKD doub 295 n y C9 H9 RKD sing 296 n n C10 H10 RKD sing 297 n n C11 C12 RKD doub 298 n y C11 C16 RKD sing 299 n y C11 C60 RKD sing 300 n n C12 C13 RKD sing 301 n y C12 H12 RKD sing 302 n n C13 C14 RKD doub 303 n y C13 H13 RKD sing 304 n n C14 C15 RKD sing 305 n y C14 C17 RKD sing 306 n n C15 C16 RKD doub 307 n y C15 H15 RKD sing 308 n n C16 H16 RKD sing 309 n n C17 C18 RKD sing 310 n y C17 C21 RKD doub 311 n y C18 N19 RKD doub 312 n y C18 H18 RKD sing 313 n n N19 N20 RKD sing 314 n y N20 C21 RKD sing 315 n y N20 HN20 RKD sing 316 n n C21 H21 RKD sing 317 n n # _atom_sites.entry_id 8X5L _atom_sites.fract_transf_matrix[1][1] 0.012941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RKD A 1 401 402 RKD 563 . D 3 NA A 1 402 1 NA NA . E 2 RKD B 1 401 402 RKD 563 . F 4 HOH A 1 501 4 HOH HOH . F 4 HOH A 2 502 24 HOH HOH . F 4 HOH A 3 503 6 HOH HOH . F 4 HOH A 4 504 14 HOH HOH . F 4 HOH A 5 505 17 HOH HOH . F 4 HOH A 6 506 16 HOH HOH . F 4 HOH A 7 507 22 HOH HOH . F 4 HOH A 8 508 19 HOH HOH . F 4 HOH A 9 509 18 HOH HOH . F 4 HOH A 10 510 23 HOH HOH . F 4 HOH A 11 511 1 HOH HOH . F 4 HOH A 12 512 21 HOH HOH . F 4 HOH A 13 513 15 HOH HOH . F 4 HOH A 14 514 2 HOH HOH . F 4 HOH A 15 515 3 HOH HOH . F 4 HOH A 16 516 7 HOH HOH . G 4 HOH B 1 501 20 HOH HOH . G 4 HOH B 2 502 11 HOH HOH . G 4 HOH B 3 503 9 HOH HOH . G 4 HOH B 4 504 10 HOH HOH . G 4 HOH B 5 505 5 HOH HOH . G 4 HOH B 6 506 26 HOH HOH . G 4 HOH B 7 507 13 HOH HOH . G 4 HOH B 8 508 8 HOH HOH . G 4 HOH B 9 509 25 HOH HOH . G 4 HOH B 10 510 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RKD . . . C 2 28.587 -21.93 4.213 1 68.37 0 N1 RKD 401 A 1 HETATM 2 C C2 RKD . . . C 2 29.498 -21.548 3.118 1 67.08 0 C2 RKD 401 A 1 HETATM 3 C C4 RKD . . . C 2 31.947 -20.916 2.876 1 67.13 0 C4 RKD 401 A 1 HETATM 4 C C5 RKD . . . C 2 31.95 -20.979 1.491 1 69.31 0 C5 RKD 401 A 1 HETATM 5 C C6 RKD . . . C 2 33.123 -21.19 0.792 1 73.53 0 C6 RKD 401 A 1 HETATM 6 C C7 RKD . . . C 2 34.299 -21.343 1.489 1 78.31 0 C7 RKD 401 A 1 HETATM 7 O O7 RKD . . . C 2 30.849 -21.122 4.999 1 66.82 0 O7 RKD 401 A 1 HETATM 8 CL CL8 RKD . . . C 2 35.787 -21.625 0.617 1 104.89 0 CL8 RKD 401 A 1 HETATM 9 C C9 RKD . . . C 2 34.329 -21.282 2.862 1 73.36 0 C9 RKD 401 A 1 HETATM 10 C C10 RKD . . . C 2 33.151 -21.067 3.549 1 67.96 0 C10 RKD 401 A 1 HETATM 11 C C11 RKD . . . C 2 30.269 -19.183 3.68 1 62.33 0 C11 RKD 401 A 1 HETATM 12 C C12 RKD . . . C 2 30.214 -18.459 4.876 1 60.13 0 C12 RKD 401 A 1 HETATM 13 C C13 RKD . . . C 2 29.855 -17.123 4.887 1 57.56 0 C13 RKD 401 A 1 HETATM 14 C C14 RKD . . . C 2 29.564 -16.451 3.703 1 56.99 0 C14 RKD 401 A 1 HETATM 15 C C15 RKD . . . C 2 29.614 -17.168 2.51 1 59.01 0 C15 RKD 401 A 1 HETATM 16 C C16 RKD . . . C 2 29.968 -18.506 2.496 1 60.68 0 C16 RKD 401 A 1 HETATM 17 C C17 RKD . . . C 2 29.158 -15.041 3.714 1 55.77 0 C17 RKD 401 A 1 HETATM 18 C C18 RKD . . . C 2 28.896 -14.264 4.843 1 54.36 0 C18 RKD 401 A 1 HETATM 19 N N19 RKD . . . C 2 28.509 -13.061 4.412 1 52.49 0 N19 RKD 401 A 1 HETATM 20 N N20 RKD . . . C 2 28.482 -12.99 3.075 1 53.12 0 N20 RKD 401 A 1 HETATM 21 C C21 RKD . . . C 2 28.857 -14.19 2.649 1 54.38 0 C21 RKD 401 A 1 HETATM 22 C C60 RKD . . . C 2 30.65 -20.677 3.662 1 64.97 0 C60 RKD 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #